mRNA_P-littoralis_Contig1015.13.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE) HSP 1 Score: 316 bits (810), Expect = 2.860e-99 Identity = 258/311 (82.96%), Postives = 263/311 (84.57%), Query Frame = 2 Query: 20 RVAYAGSTSKKIYTVDTRDPMSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLNNSRPRRSRHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAASSSPGVGMGEVGEDREPSLELMHALRGHTVKNWPIRCAFFRGLHHRPPRVRLGVAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGRYCGGMGNNDLGNDWQHSLVLATGSTDGSIHVFDLSNGQ 952
RVAYAGSTSKKIYTVDTRDPM VVA WNC AFVNSLHVYSDGSKVVSADASGKILTWDTRTGG+VDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLN SRP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ + P +EPSLELMHALRGHTVKNWPIR GLHHRPPRVRLG+AKGG XXXXXXXXXXXXXXXXXXXXXXXXXXXX MG DLGNDWQHSLVLATGS DGSIHVFDLS GQ
Sbjct: 272 RVAYAGSTSKKIYTVDTRDPMGVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLN-SRPXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGEAKP----------KEPSLELMHALRGHTVKNWPIR-----GLHHRPPRVRLGLAKGGNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQ 553
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A5D6XXH4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXH4_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 6.970e-16 Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 2 Query: 29 YAGSTSKKIYTVDTRDPMSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYS-LEDPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFHRR 352
+ G++ I+ VD+R VV +W +A VNSL+V DG +V+ D+ G + TWD R +D S L DP ISHI ASPP GR+ DE+G LAAN +DN LRV+ RR
Sbjct: 196 FFGTSKSCIHQVDSR--ADVVRSWQNDAMVNSLYVSPDGQFIVTGDSKGMLKTWDVRMDACIDDISKLNDPGRHAISHIHASPPVDGRRGDEDGRFLAANSYDNLLRVYDRR 305
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A8K1CHV1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHV1_PYTOL) HSP 1 Score: 86.7 bits (213), Expect = 8.180e-15 Identity = 53/115 (46.09%), Postives = 68/115 (59.13%), Query Frame = 2 Query: 29 YAGSTSKKIYTVDTRDPM---SVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYSLE-DPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFHRR 352
+ G++ I+ VD+R + S TW +A VNSL+V DG VV+ D+ G I TWD R ++ S E DP ISHI ASPP GR DE+G LAAN +DN LRV+ RR
Sbjct: 216 FMGTSKSAIHMVDSRADVCRWSDCVTWQNDAMVNSLYVSPDGQFVVTGDSKGMIKTWDVRMESCIEDISRENDPGRHAISHIHASPPVDGRGGDEDGRFLAANSYDNILRVYDRR 330
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A2D4BDQ6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ6_PYTIN) HSP 1 Score: 83.2 bits (204), Expect = 1.110e-13 Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = 2 Query: 29 YAGSTSKKIYTVDTRDPMSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYSLE-DPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFHRR 352
+ G++ I+ +D+R V W A VNSL+V DG V++ D+ G I TWD R ++ S + DP + ISHI ASPP GR DE+G LAAN +DN LRV+ RR
Sbjct: 211 FLGTSKNAIHMMDSR--AEVCRKWQNNAMVNSLYVSPDGQFVITGDSRGMIKTWDVRMESCIEDISRQNDPGNHAISHIHASPPVDGRSGDEDGRFLAANSYDNILRVYDRR 320
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 2.650e-10 Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 2 Query: 851 MGNNDLGNDWQHSLVLATGSTDGSIHVFDLSNGQ 952
MG DLGNDWQHSLVLATGS DGSIHVFDLS GQ
Sbjct: 1 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQ 34
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 5.110e-7 Identity = 34/97 (35.05%), Postives = 41/97 (42.27%), Query Frame = 2 Query: 662 AFFRGLHHRPPRVRLGVAKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGRYCGGMGNNDLGNDWQHSLVLATGSTDGSIHVFDLSNGQ 952
AFF+GL HR PR+R A GG+G D G DW HSLVLATGS DG+I+ FD+S G+
Sbjct: 2 AFFKGLQHRTPRMRRAAAGNSAGGSAHGRRAAAESVG------------------------GGIGYEDSGKDWAHSLVLATGSADGNIYTFDMSKGE 74
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Match: A0A2V3IL28_9FLOR (WD repeat-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL28_9FLOR) HSP 1 Score: 58.2 bits (139), Expect = 1.610e-5 Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 2 Query: 38 STSKK-IYTVDTR-------DPMSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRT------GGI-------VDSYSLEDPIH-ISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHR 349
+TSK ++ +D R DP+++VA E+ VN++HV DG++ ++ D G I +WD R GG+ +D+ ++ H I+H+ PP AG ++ G L+A N +D LRV+ R
Sbjct: 250 ATSKNAVHLIDRRAPTRPVTDPLTLVAN---ESVVNTIHVTLDGNRFITGDHGGAIKSWDLRMVESKDQGGVEKRDAALLDTAFNDENHHPITHVHTCPPTAG--EDFGRLMAVNSYDAFLRVYDR 370 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1015.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1015.13.1 >prot_P-littoralis_Contig1015.13.1 ID=prot_P-littoralis_Contig1015.13.1|Name=mRNA_P-littoralis_Contig1015.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=324bp MSVVATWNCEAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGIVDSYSLback to top mRNA from alignment at P-littoralis_Contig1015:48014..50693- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1015.13.1 ID=mRNA_P-littoralis_Contig1015.13.1|Name=mRNA_P-littoralis_Contig1015.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2680bp|location=Sequence derived from alignment at P-littoralis_Contig1015:48014..50693- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1015:48014..50693- >mRNA_P-littoralis_Contig1015.13.1 ID=mRNA_P-littoralis_Contig1015.13.1|Name=mRNA_P-littoralis_Contig1015.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig1015:48014..50693- (Pylaiella littoralis U1_48)back to top |