mRNA_P-littoralis_Contig1009.7.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 116 bits (290), Expect = 5.180e-31 Identity = 62/123 (50.41%), Postives = 75/123 (60.98%), Query Frame = 1 Query: 1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLFRPHPEAELPGHT*AQLLLQWPQEGFRDELPG 369 RNGA+PVEYQV TLRWLAGG + + GHVIA+STAY VI A+NAC L C+WPE + D A F +RS+ G + G+ L P +AE G AQL+LQ QE R ELPG Sbjct: 5 RNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.260e-23 Identity = 50/92 (54.35%), Postives = 61/92 (66.30%), Query Frame = 1 Query: 1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 276 RNGA+PVEYQV TLRWLAGG + + GHVIA+STAY VI A+NAC L C+WPE + D + + + V+ KCVGAMDGLF Sbjct: 102 RNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DLPEPPSFSATAALMDVVRKCVGAMDGLF 192
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 102 bits (253), Expect = 4.430e-23 Identity = 51/92 (55.43%), Postives = 64/92 (69.57%), Query Frame = 1 Query: 1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 276 RNGA+PVE+Q+ TLR+LAGG + ++ +VIAKSTAY RVI AIN L C+WP D ++ A + RSTNGVI +CVGAMDGLF Sbjct: 102 RNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGD-DAEAQAELYRRRSTNGVIRRCVGAMDGLF 192
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 2.300e-22 Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGLF 276 R GA+PVEYQ+ TLRWLAGG + + GHVIA+STAY VI A+NAC L C+WPE + D V+ KCVGAMDGLF Sbjct: 102 RIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLF 178
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.180e-8 Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 1 Query: 1 RNGAVPVEYQVGNTLRWLAGGQMLDIKQGHVIAKSTAY 114 RNGA+PVEYQV TLRWLAGG + GHVIA+STAY Sbjct: 102 RNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: G4ZVV4_PHYSP (DDE Tnp4 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZVV4_PHYSP) HSP 1 Score: 54.3 bits (129), Expect = 3.010e-6 Identity = 32/93 (34.41%), Postives = 49/93 (52.69%), Query Frame = 1 Query: 1 RNGAVPVEYQV--GNTLRWLAGGQMLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFNSRSTNGVIAKCVGAMDGL 273 R G P+ +V TLR+LAGG LDI+ ++ ++ Y+ + I AI C L + P + + AA F S+ GV+ CVG +DG+ Sbjct: 27 RTGVAPISEEVVLHCTLRYLAGGSYLDIRDVAQLSVASFYRCLNKGIFAILNCTELAIQLPTTPREIECAAAEFAKSSSEGVLDGCVGCVDGM 119
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 3.480e-6 Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 2 Query: 269 GFFVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQA 370 G FVR ++P++++ EPN +Y+GHKKGFGMNFQA Sbjct: 179 GLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQA 212
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 50.8 bits (120), Expect = 1.680e-5 Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 2 Query: 275 FVRTLRPNSRDTHEPNSFYSGHKKGFGMNFQ 367 FVR ++P++++ EPN +Y+GHKKGFGMNFQ Sbjct: 95 FVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ 125 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1009.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1009.7.1 >prot_P-littoralis_Contig1009.7.1 ID=prot_P-littoralis_Contig1009.7.1|Name=mRNA_P-littoralis_Contig1009.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp MLDIKQGHVIAKSTAYQTAVRVIKAINACEALECRWPEKQTDYDSIAAGFback to top mRNA from alignment at P-littoralis_Contig1009:8585..8954- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1009.7.1 ID=mRNA_P-littoralis_Contig1009.7.1|Name=mRNA_P-littoralis_Contig1009.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=370bp|location=Sequence derived from alignment at P-littoralis_Contig1009:8585..8954- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1009:8585..8954- >mRNA_P-littoralis_Contig1009.7.1 ID=mRNA_P-littoralis_Contig1009.7.1|Name=mRNA_P-littoralis_Contig1009.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1009:8585..8954- (Pylaiella littoralis U1_48)back to top |