mRNA_P-littoralis_Contig1002.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1002.7.1
Unique Name	mRNA_P-littoralis_Contig1002.7.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1002.7.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.640e-20
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1

Query:    4 EVNMFERRGYKVTVVFDGATPPAKQDTSQGRMKRREESASAARRLAVQGGASASEVNRMASASCVFDSRMNARLARRLRDLIQGEVYMAPGEA 282
            EV+ FE RG+KVTVV DG+TPPAK+ TS+ R  +RE +AS AR L   GG   +E+N+ AS +CVFDSR+ AR+A  LR  I GEVY+AP EA
Sbjct:   66 EVSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGR-LTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREA 157

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1002.7.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1002.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
A0A6H5KFX7_9PHAE	1.640e-20	58.06	Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1002	contig	P-littoralis_Contig1002:6485..6766 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D7G0K2
PFAMs	XPG_I,XPG_N
Model size	282
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10746
KEGG Pathway	ko03430,map03430
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.09e-20
EggNOG OGs	COG0258@1\|root,KOG2518@2759\|Eukaryota
Description	5'-3' exodeoxyribonuclease activity
Cds size	270
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03032,ko03400

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789344.0131152-UTR-P-littoralis_Contig1002:6484..6496	1680789344.0131152-UTR-P-littoralis_Contig1002:6484..6496	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1002 6485..6496 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789344.0250812-CDS-P-littoralis_Contig1002:6496..6766	1680789344.0250812-CDS-P-littoralis_Contig1002:6496..6766	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1002 6497..6766 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1002.7.1	prot_P-littoralis_Contig1002.7.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1002 6497..6766 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1002:6485..6766+
coding sequence from alignment at P-littoralis_Contig1002:6485..6766+

protein sequence of mRNA_P-littoralis_Contig1002.7.1

>prot_P-littoralis_Contig1002.7.1 ID=prot_P-littoralis_Contig1002.7.1|Name=mRNA_P-littoralis_Contig1002.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MFERRGYKVTVVFDGATPPAKQDTSQGRMKRREESASAARRLAVQGGASA
SEVNRMASASCVFDSRMNARLARRLRDLIQGEVYMAPGEA

mRNA from alignment at P-littoralis_Contig1002:6485..6766+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1002.7.1 ID=mRNA_P-littoralis_Contig1002.7.1|Name=mRNA_P-littoralis_Contig1002.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig1002:6485..6766+ (Pylaiella littoralis U1_48)
AAGGAGGTAAACATGTTCGAGCGCCGCGGGTACAAGGTGACGGTCGTGTT
TGACGGTGCCACACCACCAGCTAAACAAGACACCTCTCAGGGGAGAATGA
AGAGGCGGGAGGAGAGTGCGTCGGCGGCCCGCCGTCTCGCCGTACAAGGT
GGAGCCTCTGCTTCTGAAGTCAACAGGATGGCTTCCGCTTCTTGTGTTTT
TGATTCACGGATGAACGCCAGACTCGCGAGGCGACTACGAGACCTCATCC
AGGGCGAAGTGTATATGGCCCCGGGCGAGGCT

Coding sequence (CDS) from alignment at P-littoralis_Contig1002:6485..6766+

>mRNA_P-littoralis_Contig1002.7.1 ID=mRNA_P-littoralis_Contig1002.7.1|Name=mRNA_P-littoralis_Contig1002.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig1002:6485..6766+ (Pylaiella littoralis U1_48)
ATGTTCGAGCGCCGCGGGTACAAGGTGACGGTCGTGTTTGACGGTGCCAC
ACCACCAGCTAAACAAGACACCTCTCAGGGGAGAATGAAGAGGCGGGAGG
AGAGTGCGTCGGCGGCCCGCCGTCTCGCCGTACAAGGTGGAGCCTCTGCT
TCTGAAGTCAACAGGATGGCTTCCGCTTCTTGTGTTTTTGATTCACGGAT
GAACGCCAGACTCGCGAGGCGACTACGAGACCTCATCCAGGGCGAAGTGT
ATATGGCCCCGGGCGAGGCT