mRNA_P-littoralis_Contig100.30.1 (mRNA) Pylaiella littoralis U1_48
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-littoralis_Contig100.30.1 vs. uniprot
Match: D7FJY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY1_ECTSI) HSP 1 Score: 360 bits (925), Expect = 1.710e-115 Identity = 200/301 (66.45%), Postives = 219/301 (72.76%), Query Frame = 3 Query: 219 LPPEELAASIRRCLNNMHGPEWHCVVGKVKAFSVHVRYWRGKSFLLMGAGLRIIVFQSAPPAPE--AHPPPPREEGEGIEQTPTNKSAERASIKVLRSEMEQGYQKRVLAMASAKAKEVGKAGDLDSLVAAIKASLTEMTGPVWHVVAARGAGDWGCSVAHEGGHRLDFKLNGDRIICWKHAQPPPSLADMFTLKLMSSLLFLATVVLLCVYVKFQGSCDRCCSSYPAVREKAGCATGPPSSDGESTAAGDIVPGVEGCDGDATEAADLCLVRSKILFFATCATMAGATALKWSDRSKLKR 1115 +PPEELAASIRRCLNNM WRGKSFL GLRIIVFQSAPPAP+ P E+ +Q PT K ER SIKVLRSEMEQGYQKRVLAMASA A+E GK GDL+S+VAA+KASLTE TGPVWHV+A RGAGDWG SVAHE G LDFKLNGDRI+CWKHAQ P L DM T+K +S+ LF+AT++LLCVYVK QGSCDRCCSSYP REKAGCA P +S G AGDIV VEGCD D TE ADLCL +KI F TC TMAGATA KW+DRSK KR Sbjct: 1 MPPEELAASIRRCLNNM---------------------WRGKSFLFEAEGLRIIVFQSAPPAPDDPLSSPQAHEQDAEAKQGPTAKGPERTSIKVLRSEMEQGYQKRVLAMASASAREHGKTGDLNSIVAALKASLTEFTGPVWHVMATRGAGDWGFSVAHEEGQLLDFKLNGDRILCWKHAQAAPGLTDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGAREKAGCAIAPTTSGG-GAGAGDIV--VEGCDVDVTEVADLCLRNAKIALFVTCGTMAGATAFKWADRSKAKR 277
BLAST of mRNA_P-littoralis_Contig100.30.1 vs. uniprot
Match: A0A6H5KTS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTS5_9PHAE) HSP 1 Score: 185 bits (470), Expect = 2.760e-51 Identity = 96/140 (68.57%), Postives = 111/140 (79.29%), Query Frame = 3 Query: 69 MGKTSKGKHATSVSQELTMHALGAVSKKTREQMRFERATRGAVQTLARLGLPPEELAASIRRCLNNMHGPEWHCVVGKVKAFSVHVRYWRGKSFLLMGAGLRIIVFQSAPPAPE--AHPPPPREEGEGIEQTPTNKSAER 482 MGKT+KG+ A + +Q+L MH+L +KKT+EQMRFE+AT+ AVQTLARLG+PPEELA SIRRCLNNMHGPEWHCV GKVKAFSVHVRYWRGKSFL GLRIIVFQSAPPAP+ P E+ +Q P+ K AER Sbjct: 1 MGKTAKGRPAGTGAQDLKMHSLDVGNKKTKEQMRFEQATKEAVQTLARLGMPPEELAGSIRRCLNNMHGPEWHCVAGKVKAFSVHVRYWRGKSFLFEAEGLRIIVFQSAPPAPDDPLSSPQAHEQDAEPKQGPSAKGAER 140
BLAST of mRNA_P-littoralis_Contig100.30.1 vs. uniprot
Match: A0A7S2Y009_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y009_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 9.880e-5 Identity = 24/60 (40.00%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 234 LAASIRRCLNNMHGPEWHCVVGKVKAFSVHVRYWRGKSFLLMGA--GLRIIVFQSAPPAP 407 LA +I N+++ PEW+CV+GK F++ VR+WRG+ F+L A G+++++FQ++ +P Sbjct: 71 LAKTISSYFNHIYHPEWNCVIGK--DFTMAVRHWRGRVFMLKSASLGVQVLLFQASTDSP 128 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.30.1 >prot_P-littoralis_Contig100.30.1 ID=prot_P-littoralis_Contig100.30.1|Name=mRNA_P-littoralis_Contig100.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=361bp MGKTSKGKHATSVSQELTMHALGAVSKKTREQMRFERATRGAVQTLARLGback to top mRNA from alignment at P-littoralis_Contig100:105985..118856+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig100.30.1 ID=mRNA_P-littoralis_Contig100.30.1|Name=mRNA_P-littoralis_Contig100.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=12872bp|location=Sequence derived from alignment at P-littoralis_Contig100:105985..118856+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig100:105985..118856+ >mRNA_P-littoralis_Contig100.30.1 ID=mRNA_P-littoralis_Contig100.30.1|Name=mRNA_P-littoralis_Contig100.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1083bp|location=Sequence derived from alignment at P-littoralis_Contig100:105985..118856+ (Pylaiella littoralis U1_48)back to top |