Homology
BLAST of mRNA_P-littoralis_Contig10.197.1 vs. uniprot
Match:
D7FQF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF6_ECTSI)
HSP 1 Score: 160 bits (405), Expect = 4.260e-41
Identity = 95/182 (52.20%), Postives = 114/182 (62.64%), Query Frame = 3
Query: 261 GAGGGKLQETALSFTGVVTIITFCCCSTMSCVALCIKCVSWMVGHRGRRRRIFLLPEQGWRPDLGQNDDEEDGEELCPCRTPRTVIVLNTIPAEQRNGRVLQTSEIELREVPFGNIEEQXXXXXXXPSGNGDAAVVGEKGFNMMSGKQGQAGGLRLQRER---TGGSTMTRTGTPSMNGELE 797
G GGG L+ETALSFTG+V+IITFCCCSTMSCVALCIK SWM GHRGRR+R+ LLP + QND E + + P + P VI+L+T PAEQR+G L+ SEIELR+VPFGN+E Q + + G + KQ G + ER TG S MTR GTPS NGE E
Sbjct: 7 GGGGGGLRETALSFTGIVSIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQ------QNDGEAEEQLYYPHQQP--VIILDTNPAEQRSGCTLRASEIELRQVPFGNLEAQRETKNSDVNDDDVGFRTGAQADPNKIQKQQHLKGSASRMERDTTTGTSIMTRAGTPSTNGEQE 180
BLAST of mRNA_P-littoralis_Contig10.197.1 vs. uniprot
Match:
A0A6H5JCN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN9_9PHAE)
HSP 1 Score: 158 bits (400), Expect = 2.080e-40
Identity = 98/185 (52.97%), Postives = 115/185 (62.16%), Query Frame = 3
Query: 261 GAGGGKLQETALSFTGVVTIITFCCCSTMSCVALCIKCVSWMVGHRGRRRRIFLLPEQGWRPDLGQNDDEEDGEELCPCRTPRTVIVLNTIPAEQRNGRVLQTSEIELREVPFGNIEEQXXXXXXXPSGNGDAAVV---GEKGFNMMSGKQGQAGGLRLQRER---TGGSTMTRTGTPSMNGELE 797
G GGG L+ETALSFTG+++IITFCCCSTMSCVALCIK SWM GHRGRR+R+ LLP + QND E + + P P VI+L+T AE+R+G L SEIELR+VPFGN+E Q S +GD VV G + KQ G Q ER TG S MTR GTPS NGE E
Sbjct: 7 GGGGGGLRETALSFTGIISIITFCCCSTMSCVALCIKLASWMFGHRGRRQRVPLLPHEQ------QNDGEAEEQLYSPHHQP--VIILDTNSAEKRSGYTLHASEIELRQVPFGNLEAQRETKN---SDDGDDDVVFLTGAQADPNKIRKQQHLKGSASQMERDTTTGTSIMTRAGTPSTNGEQE 180
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.197.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.26e-41 / Id = 52.20 Expect = 2.08e-40 / Id = 52.97 Sequence D7FQF6_ECTSI A0A6H5JCN9_9PHAE
Match Name E-value Identity Description
D7FQF6_ECTSI 4.260e-41 52.20 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCN9_9PHAE 2.080e-40 52.97 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1
Start 1
Model size 2698
Hectar predicted targeting category signal anchor
Exons 1
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-01_006310.1
Cds size 654
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789334.1485574-UTR-P-littoralis_Contig10:694938..695180 1680789334.1485574-UTR-P-littoralis_Contig10:694938..695180 Pylaiella littoralis U1_48 UTR P-littoralis_Contig10 694939..695180 +
1680789334.178776-UTR-P-littoralis_Contig10:695834..697636 1680789334.178776-UTR-P-littoralis_Contig10:695834..697636 Pylaiella littoralis U1_48 UTR P-littoralis_Contig10 695835..697636 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789334.1675901-CDS-P-littoralis_Contig10:695180..695834 1680789334.1675901-CDS-P-littoralis_Contig10:695180..695834 Pylaiella littoralis U1_48 CDS P-littoralis_Contig10 695181..695834 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig10.197.1
>prot_P-littoralis_Contig10.197.1 ID=prot_P-littoralis_Contig10.197.1|Name=mRNA_P-littoralis_Contig10.197.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=218bp
MWTQQNGAGGGKLQETALSFTGVVTIITFCCCSTMSCVALCIKCVSWMVG HRGRRRRIFLLPEQGWRPDLGQNDDEEDGEELCPCRTPRTVIVLNTIPAE QRNGRVLQTSEIELREVPFGNIEEQQQQQRRRPSGNGDAAVVGEKGFNMM SGKQGQAGGLRLQRERTGGSTMTRTGTPSMNGELEQTPSSSSCEGNNQGE GEDSADENRDAELRRPP* back to top mRNA from alignment at P-littoralis_Contig10:694939..697636+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.197.1 ID=mRNA_P-littoralis_Contig10.197.1|Name=mRNA_P-littoralis_Contig10.197.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2698bp|location=Sequence derived from alignment at P-littoralis_Contig10:694939..697636+ (Pylaiella littoralis U1_48)CTTTGGGATAGCCCCCCACTGATACTGCTGTGTGGCGTGTTCATTCCGTC
GTATTGATAATTCTTCTTCATTCGAGGAGGGCGTTCCGTCCGTCATCTCG
CTGCATATAGCGATGGTTCTTCTCTGCATGGTCTTATGATACGTACGAGA
TACCAAAATCCCTGTAACCGACAACCTCAAAACAGCAGTAGTTTCGACAG
GGTTTCGAACTGAATCTTTTCCTCCTCAAACATCATGACCCT ATGTGGAC
ACAGCAAAACGGAGCTGGTGGCGGCAAGCTCCAAGAGACGGCGCTGTCCT
TTACAGGAGTCGTCACCATAATCACCTTCTGCTGCTGCTCGACCATGTCG
TGCGTGGCTCTGTGCATCAAGTGCGTCAGCTGGATGGTCGGACATCGCGG
CAGGCGACGGAGGATCTTTCTCCTACCCGAACAAGGGTGGCGGCCGGACC
TCGGGCAAAACGACGACGAGGAGGACGGAGAAGAGCTCTGCCCGTGCCGA
ACACCGCGGACGGTCATCGTTTTGAATACCATCCCCGCAGAGCAGCGGAA
TGGCCGTGTCCTGCAAACCTCGGAGATCGAGCTTCGAGAGGTGCCGTTCG
GTAACATAGAGGAGCAGCAGCAGCAGCAGCGGAGAAGGCCGAGCGGCAAC
GGCGACGCTGCAGTAGTGGGAGAAAAAGGTTTCAATATGATGAGCGGGAA
GCAGGGACAAGCCGGCGGCTTGCGGCTTCAGCGTGAGAGGACTGGCGGAT
CGACCATGACTCGGACGGGAACGCCGTCTATGAACGGAGAACTGGAGCAA
ACTCCTTCAAGCTCGTCTTGCGAAGGAAATAACCAAGGCGAAGGTGAAGA
CAGCGCCGACGAAAATAGAGATGCCGAGCTCAGACGACCACCATAG AACT
GCTGTAGGGGACGGGGAGTCTATGGGCTAGTTGGCGGCGGCACAGGGAAA
CGAGGCTACTGAAGCGCCCTCAGCAATGAAGACAACGCTCAAGACCTCGC
AGTTTCAGGGGTCATTTTATTGGGCACTGATGAACCAGTCCGTGCAACAA
GAGCTCCGCATGAGTGCTGGCAGGTTGCCGTTCTTGAGGGCAGCGTGGCG
GGATTCGCGCTTCTGGGATGACATTGAGCACAAGTTCGAGGCTACCTGTT
CTGTGTGTATCGGCAGGGATCGATCATGTTCAGAAACGGATAGTTCTCCT
GAACGTTCGACATCGGGTTTGACCGTACACGTTTGTGAAGCCTGGAAGAG
CGGTCCTTGTGTACAACAACAATGTGTGGGGATGTTGGGAAACTTATTTC
TAGGTCGCATCCACCGTTGTCATACTGCGGTGAGTGTGTGCCGGCTAGAG
GTTGAACATGCGTCTTCGTGCATGCGTACGATGTCCTTACGGCTCCATCC
GCCTTCTTGCTTGCTGCAGTAATTGACTATCACGTCATGACTATCACCCT
ACTCTTGTTTTCATCAATGCAGAACATCCATATGTAGTCAGTCCCCTCAG
GCGGCTTAATTTGGGCTCCTTCAATCGAGATCCTCTCGACCTGACGACTG
GAACAGTTTTCTGGTCAAATGGCTTCTGTTAGCTTCGTTTTGCTCTGACG
AAACGCGTTTTATCGCCATTTTGGCTTACGCGGAAAATTCGCGTGAGCAG
AATGATCTCCCGTAGCTATTGTCTTTACAGATGTGCCGATATGGCATGGC
GTGGGTGGTCGCTGAACCTGCGTTTAATGTTCCTCATTCGCACGGCGTGT
TTTTGTTTTTTGGTTTTCGTTATACCACGACTGGTGCCCCCAGGGAAAGA
ACTACATCTTGTATTTTTACGTTCGGGTCCAACAGTCCACTTACTTGACT
TAGTTTAGATTTTAAAGTTTAAGCCGCATGATGTACATAGGGTTGCGAAA
TGAATAGGCGTGGTCAACACATTTAAGTTGTTAAAGAAAACATCTCCGGT
GCCTGTTGCATACCGGTACTGGTTACAACAGTAGCGACGTCGCCCAATTT
TTCCACAAGATTGTCTAGTGATTTTTACCTAGCACAGCCATTGAAATGGG
TTGTGGGACTTGTCCTCACGCTGGCTCGATAGCGTTGCTTTTCATGGGCA
AAAACATCCCGAGTGATACGTTTCTTTTTCGCGGAGTCGAGTTCCGTCTA
CGTCTACCCCTTTGACTGCGGTCTGGATACCTCCGAAGCAAGGATGCTAT
ATCCAGGCATTGACTACTCAGGGGGCTCGGAAACGTATTTCCAGCGACAG
GGTCGAGTCTTTTTTGTATGCAGGGTTGAGTGGTGTTTCAAGGATTTGCT
GAGTGTATCGTGGGGAAAAGCTATGTTTCCTGCCGCATTGGACGAGGATA
TCAGACATCTCATTTACGAGGTAACTCAGGTGGGCTCCAACCCGCTGCGT
CCATCGACTCGAAACTTGCCACGATTGAATCATGAATCTGGAGAGGTACT
GACAGTTTGTTGTTGGGGCGAACATCAAAAGCAAATAAAAATTTACCATC
ACGTACGGTCCGGCGATCGATAATTTATTATGTGGCCTTCTCTCACGGCG
GCAGTGGACCCGGCCAGCCTCTACAGATGGCGCAGCGATGTACGAATTTG
GCAGCTGAGATCTTTGGCCTCAAAGTTTTAGGATTACCGTAAGAACTTGC
GCACAATTGTGATCCCTTTGCGAGTGGCTGTTGGCAGCGCATATGGGG back to top Coding sequence (CDS) from alignment at P-littoralis_Contig10:694939..697636+
>mRNA_P-littoralis_Contig10.197.1 ID=mRNA_P-littoralis_Contig10.197.1|Name=mRNA_P-littoralis_Contig10.197.1|organism=Pylaiella littoralis U1_48|type=CDS|length=654bp|location=Sequence derived from alignment at P-littoralis_Contig10:694939..697636+ (Pylaiella littoralis U1_48) ATGTGGACACAGCAAAACGGAGCTGGTGGCGGCAAGCTCCAAGAGACGGC GCTGTCCTTTACAGGAGTCGTCACCATAATCACCTTCTGCTGCTGCTCGA CCATGTCGTGCGTGGCTCTGTGCATCAAGTGCGTCAGCTGGATGGTCGGA CATCGCGGCAGGCGACGGAGGATCTTTCTCCTACCCGAACAAGGGTGGCG GCCGGACCTCGGGCAAAACGACGACGAGGAGGACGGAGAAGAGCTCTGCC CGTGCCGAACACCGCGGACGGTCATCGTTTTGAATACCATCCCCGCAGAG CAGCGGAATGGCCGTGTCCTGCAAACCTCGGAGATCGAGCTTCGAGAGGT GCCGTTCGGTAACATAGAGGAGCAGCAGCAGCAGCAGCGGAGAAGGCCGA GCGGCAACGGCGACGCTGCAGTAGTGGGAGAAAAAGGTTTCAATATGATG AGCGGGAAGCAGGGACAAGCCGGCGGCTTGCGGCTTCAGCGTGAGAGGAC TGGCGGATCGACCATGACTCGGACGGGAACGCCGTCTATGAACGGAGAAC TGGAGCAAACTCCTTCAAGCTCGTCTTGCGAAGGAAATAACCAAGGCGAA GGTGAAGACAGCGCCGACGAAAATAGAGATGCCGAGCTCAGACGACCACC ATAG back to top