mRNA_P-littoralis_Contig10.10.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.10.2
Unique NamemRNA_P-littoralis_Contig10.10.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig10.10.2 vs. uniprot
Match: A0A6H5L288_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L288_9PHAE)

HSP 1 Score: 450 bits (1158), Expect = 1.620e-156
Identity = 222/300 (74.00%), Postives = 249/300 (83.00%), Query Frame = 2 
Query:   65 MVPIGVSQAAAGVLAFILTDALLPQWEWRGLDVSATFLNISGSFVAGLAKGGGDAKEDSNSVEVQTAISIVMNGFLAVWTSLLFTVEHAAHLAVVTSPGAGALYLLGSILLGWGSYMLAHCLGRRWRVSRKAVDWAKRGPLWLCKGVESTALLGLVVAVAWGGWMTGQHPHRLGWGVVMAVIGGIVGSWFSGLNGGSEGRIKWGDWRCNALSFAGMVSVCRYAASLEREEREPLLESAFFVALIGQGFGTLSGFSDLSADAGNLALKRDYGGAAANIFLNIATAAVALLARLKAEKIFLS 964
            M  IG+SQAAA   AF+LTDAL+P WEW G+DVSAT LNISGSF AGLA GGG A EDS + EV+ A SIV++GFLAVWTSL F VEH AHLAVV S  AG  YLL SILLGWG Y+ AH  GRRWRVSRKAVDWAKRGPLW+CKG E TAL+  V A+AWG WM GQHPH+LGWG++MAV+GGI+G+WFS LNGG+EGRI WGDWRCNALSFAG+++  RYAASLE EERE  LESAFFVAL+ QGFGT+SGFSDLSADAG+LALK DY GAAAN+ LNIATA VAL AR KA KIF+S
Sbjct:    1 MATIGMSQAAAAATAFLLTDALVPVWEWNGVDVSATLLNISGSFFAGLANGGGMAPEDSKNSEVRAANSIVISGFLAVWTSLAFVVEHGAHLAVVASLEAGVGYLLVSILLGWGVYLQAHRWGRRWRVSRKAVDWAKRGPLWMCKGAEKTALVAAVAAMAWGSWMAGQHPHKLGWGIIMAVMGGIIGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISGFSDLSADAGDLALKGDYWGAAANMLLNIATAVVALFARFKAAKIFIS 300
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BLAST of mRNA_P-littoralis_Contig10.10.2 vs. uniprot
Match: A0A7S3X1D9_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X1D9_EMIHU)

HSP 1 Score: 55.1 bits (131), Expect = 2.370e-5
Identity = 47/135 (34.81%), Postives = 63/135 (46.67%), Query Frame = 2 
Query:   92 AAGVLAFILTDALLPQWEWRGLDVSATFLNISGSFVAGLAKGGGDAKEDSNSVEVQTAISIVMNGFLAVWTSLLFTVEHAAHLAVVTSPGA-----GALYLLGSILLGWGSYMLAHCLGRRWRVSRKAVDWAKRG 481
            A G LA  LT    P      LDVSAT LNISG+F+AG+A     A    ++  + +A +    GF+ V+TS     E AA L   TSPG      GA Y+L        +   A  LG R +++ +    A  G
Sbjct:   54 AWGALAECLTSVFCPIVMVGALDVSATILNISGAFLAGIAH---SADATPSAPRLHSACATFQAGFIGVFTSFTVLFEQAARLD--TSPGCENRACGAGYVLAVFAAQLAAAAAAARLGGRGQLASRLAAAAAVG 183
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BLAST of mRNA_P-littoralis_Contig10.10.2 vs. uniprot
Match: R1DBE1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DBE1_EMIHU)

HSP 1 Score: 54.3 bits (129), Expect = 4.880e-5
Identity = 41/105 (39.05%), Postives = 53/105 (50.48%), Query Frame = 2 
Query:   92 AAGVLAFILTDALLPQWEWRGLDVSATFLNISGSFVAGLAKGGGDAKEDSNSVEVQTAISIVMNGFLAVWTSLLFTVEHAAHLAVVTSPGA-----GALYLLGSI 391
            A G LA  LT    P      LDVSAT LNISG+F+AG+A     A    ++  + +A +    GF+ V+TS     E AA L   TSPG      GA Y+L  +
Sbjct:   34 AWGALAECLTSVFCPIVMVGALDVSATILNISGAFLAGIAH---SADATPSAPRLHSACATFQAGFIGVFTSFTVLFEQAARLD--TSPGCENRACGAGYVLAEM 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.10.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L288_9PHAE1.620e-15674.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3X1D9_EMIHU2.370e-534.81Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1DBE1_EMIHU4.880e-539.05Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:40222..45234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog112098.XP_008610462.1
Model size1097
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons7
Evalue2.59e-08
EggNOG OGs2AFAM@1|root,2RYXB@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006830.2
Cds size903
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.10.2prot_P-littoralis_Contig10.10.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 40352..45170 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789326.8009129-UTR-P-littoralis_Contig10:40221..403511680789326.8009129-UTR-P-littoralis_Contig10:40221..40351Pylaiella littoralis U1_48UTRP-littoralis_Contig10 40222..40351 -
1680789326.8802042-UTR-P-littoralis_Contig10:45170..452341680789326.8802042-UTR-P-littoralis_Contig10:45170..45234Pylaiella littoralis U1_48UTRP-littoralis_Contig10 45171..45234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789326.81196-CDS-P-littoralis_Contig10:40351..404971680789326.81196-CDS-P-littoralis_Contig10:40351..40497Pylaiella littoralis U1_48CDSP-littoralis_Contig10 40352..40497 -
1680789326.8246777-CDS-P-littoralis_Contig10:41395..415471680789326.8246777-CDS-P-littoralis_Contig10:41395..41547Pylaiella littoralis U1_48CDSP-littoralis_Contig10 41396..41547 -
1680789326.8360963-CDS-P-littoralis_Contig10:42127..421851680789326.8360963-CDS-P-littoralis_Contig10:42127..42185Pylaiella littoralis U1_48CDSP-littoralis_Contig10 42128..42185 -
1680789326.8459637-CDS-P-littoralis_Contig10:42498..426681680789326.8459637-CDS-P-littoralis_Contig10:42498..42668Pylaiella littoralis U1_48CDSP-littoralis_Contig10 42499..42668 -
1680789326.8539732-CDS-P-littoralis_Contig10:42822..429571680789326.8539732-CDS-P-littoralis_Contig10:42822..42957Pylaiella littoralis U1_48CDSP-littoralis_Contig10 42823..42957 -
1680789326.8621094-CDS-P-littoralis_Contig10:44354..444711680789326.8621094-CDS-P-littoralis_Contig10:44354..44471Pylaiella littoralis U1_48CDSP-littoralis_Contig10 44355..44471 -
1680789326.8723176-CDS-P-littoralis_Contig10:45045..451701680789326.8723176-CDS-P-littoralis_Contig10:45045..45170Pylaiella littoralis U1_48CDSP-littoralis_Contig10 45046..45170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.10.2

>prot_P-littoralis_Contig10.10.2 ID=prot_P-littoralis_Contig10.10.2|Name=mRNA_P-littoralis_Contig10.10.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=301bp
MVPIGVSQAAAGVLAFILTDALLPQWEWRGLDVSATFLNISGSFVAGLAK
GGGDAKEDSNSVEVQTAISIVMNGFLAVWTSLLFTVEHAAHLAVVTSPGA
GALYLLGSILLGWGSYMLAHCLGRRWRVSRKAVDWAKRGPLWLCKGVEST
ALLGLVVAVAWGGWMTGQHPHRLGWGVVMAVIGGIVGSWFSGLNGGSEGR
IKWGDWRCNALSFAGMVSVCRYAASLEREEREPLLESAFFVALIGQGFGT
LSGFSDLSADAGNLALKRDYGGAAANIFLNIATAAVALLARLKAEKIFLS
*
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mRNA from alignment at P-littoralis_Contig10:40222..45234-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.10.2 ID=mRNA_P-littoralis_Contig10.10.2|Name=mRNA_P-littoralis_Contig10.10.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5013bp|location=Sequence derived from alignment at P-littoralis_Contig10:40222..45234- (Pylaiella littoralis U1_48)
GCAGCTGCGGCAGCGTATTTTCCGTTCCGCTGCACACTACTCCTGTACCA
CCCAGCCGTCCGCTATGGTTCCGATTGGCGTGTCCCAAGCTGCCGCCGGA
GTCCTAGCTTTCATCCTTACGGACGCCTTGCTACCGCAGTGGGAATGGAG
GGGGCTTGATGTGTCAGCGACGTTCCTCAACATATCCGGGTAGGCAGTCT
GCTACACTCCTGAACCTGTAGTTATTCGTGTGTGTACCTGAAGCGGCAGG
ATTGCTTCTTGGGCTCTGTACGTTCAAATGCCATGCACCAGCAGCACAAG
AGGCTGGTGTGTGCTCACAAGGTTCACGTGCAGCAGCAGCAGCAGCAGCA
TAATACGTGTACCCCCAACAGAAAGTCATCACGCCCAACCCATCTCAACC
CACCGCTTGCGACGCCTGTGGTTCATGCTTGCATCAAACAAACCCATCTA
TCTGCTGCTGTTGCAGCTGTCGTATCCGTTATCCTCCTTCTCGTTTGTTT
GAAGCAGTAACTCATGTCAACGTTTGCTAATTCCCAAATTTCGCGAACAA
GAAATACGTGGAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCAGCGGC
AGCGGCAGCAGCAGAAGATGGGCAAGAATAATGCGCGTGCCTGCCGCAAC
AGCAAAGCCCCCCCCTCCCGCCACATACATGCGGTTCGTTTTTCAGACAA
CGAGCTTGCGATTCTTGTTTTGAATCAGCCAAGTGACGCAATTCGAATTT
GTGCAACGAACAGGTCGTTTGTGGCCGGGCTGGCCAAGGGTGGCGGGGAT
GCAAAGGAGGACAGCAATAGCGTTGAGGTCCAGACAGCAATCTCGATAGT
CATGAACGGCTTTCTCGCGGTGTGGACCAGGTCAGTGTGGCGGCGCATCA
GCAGCGTCTCTGCCAGGAAGGGGTCTCTCGCCCGTGCCGAATGTGACGCA
TACACGTGCCTCTACCATCGTGTGCGCTGCTGCAATCCAAATGGCTTGTC
TATACTCTACAGCAATATATGATACGCAGCACGAGACTTGAATTGCCTGT
CACATGACACCTTCACAGCAGTATAGGTACTCGTACATGAAGGGAACCCG
GTCACGTGCACCAGTACAAAATTCGAAAAATATCCACTCTTTATCCGATA
TAAATACCATTGAAAAATAGAAATCGACCTTCCCTGACTGAGTATGTTGA
GCCGGGCTTTACAAACTACCCATATATCAGCAGAAAGTATGCCATGTAGA
GGCATGTGTGTTGGCAGGCTCAGATCTCCTTCTGGGGCTGTGCTATCGGT
GGTAAAAGACGTGTGGCATATTCAGCAGTCCAAAAACCGTCCGCACATCG
GCCCGGTATCAAACACCTCACATGATCTTCCATTGCTGTACTCGCCACCA
TGGGCCCCACTCTCGCCAACTACGCAATCCCTTAGGCAGCAAGTGATTGA
GCTACTGCAGTATACCCCGCAGTTAAGGAGAATCGGGCCCATGGCAGCGG
GTACAGCAATGGAAGATCATTTGAAAAGTTTGGTATCGGGCCGAGATGCG
GACGGTTTTTGGACTGCCCTCTTGTTGCACGTATCTTCAACCACCCATAG
CATAGCCCCAGTACGTAAAATATTTGAGCGTGCGGCACATGCATCGCCTC
TAGATGATGCTAATGCTGATGTCATTCGTAAGCCCCGCTTATTTTACACG
ACAGGCCTTTGCTGAGCGCCCTCTCGTAATCGCCCCAGCAACCACCCACC
AGCCGTTGTTTCGCCCCCTAACCCTGTTCTACCGGTCTGATGATATTTTT
TCGTGACGTTTTGGGTGTTCTTTGCGTCGGATATCTACGTAGTCCGTTGT
CTACATGGCGTTTTCTTGGGGCCACTGGGCTTACAGTGTTGTCATTTTTT
TTAAATGTCAGAGCCCTACAGAGTAACGAGCGTGCTTAATTTTAATTTGC
CCTCTCTACAGCAGTATTGCTCGCATACCGGTGCACAGCAGTAATACATT
CGCGTTGCCCCCTGGTGCGTCAATGCATTCCACATAGTGCTCTGCTTTAC
AGTACGTCCTCATGCTTCGAGCTTCCGGTGAACGGAAGCCTCACAGCGGG
GCTCACACAGAAGGAGACATCTATCTTCCTGAGGCCCCGTACCTTCTTGT
TGTCAGTCGTGCTACAAAGGTTCGGATGACTTGCTCAAAATCGTGACAGA
ATGTGAATCGCTCCGCCGCTCTTTCGCGTGTTTTTCGGGGGGGGTTTTGC
ACATTTTTTTTTCTTTGCCTCCGGCAGTTTGTTGTTCACGGTGGAGCACG
CGGCTCACCTGGCTGTCGTCACCTCTCCAGGAGCCGGAGCGTTGTATCTC
CTGGGCTCCATCCTGCTAGGCTGGGGGAGTTACATGCTGGCGCACTGCTT
GGGGAGGCGATGGTGAGTTTCTGTCATCGTTGTCGTCATCGTCGTCGTCG
TTGTTGTTTGCTTGTGCTTGTGCGTTTCGCGATGTGTGTCGTTGCCGTCC
CGAAACTCCCCCAGCCATTTGTTCCTGCCCCACGGCTAAATCCTGAACCA
CCCGCCGCACAAACAGGAGAGTCTCCCGGAAGGCGGTCGATTGGGCGAAG
AGGGGCCCGCTGTGGCTGTGTAAGGGGGTGGAGAGCACGGCGCTGTTGGG
GTTGGTGGTGGCCGTGGCGTGGGGAGGCTGGATGACCGGTCAGCACCCTC
ATCGGCTCGGCTGGGGGGTCGTTATGGCAGTCATTGGTGAGACAAGAGGG
AAAAGGCGGAGGAGAGAGATATGTTGTGCTGTAGCGCGTATGTTAATCGC
GTGGTGTTGTTGTTGGGTGTTTCCATTCCGCCAAAGGCCAGAGTGCTGCT
GAAATTGTAGTTGTTGTTGTCATGTTTGCTCCCGGTGTGATGCATCGCAC
CGGCACTTTGTGTGCTTTCGTTGAGCCATGGGCTTCCTCAGATGAGAACT
GGCGCGCCGTGTGGTGTATTTTTAAGTGTTTCACCCAAAGCCACGTGCTC
TCCTCTCTCTTTCACGTTCTCTCTTGCTCCCCACTTTTATAACACACAGG
CGGCATAGTCGGCAGCTGGTTCTCCGGTTTGAACGGGGGATCCGAAGGCA
GAATAAAGTGAGTCTCTCTATATCATCGGCCCGAACTCAGCACCGTTTGG
TTAGTTGGATTTGGTGAATGGCTTCACAGCAAGGAGTACAAGGCATTCTT
CATCGGTTCCAAACCAAAACTACCGGTAAATCCGAGGCTTCAAGCACAAG
GAAGCGGCTCTTTCGCTGGAAACTTTGGTATTTCCAACCACGAGCGCTGC
ATGACCCGGGCCTTGAACGGGTTCTTTTGCACTCTCTCGGAAGAGGACTC
GCGGGGTGAAATGCGAGGTGATATTTGTGTCGTCTATGGTGTTGGCATTT
CATCCGTACGAAAGCCCATGTCCCCTTATCTCCCCCCCCCCCCCTCTCCT
CCCCCCTCGAGTGTGTCATCTCATAAAGCAAGCGTGGGGCGTCTGCTCGA
AAGGTTTTGCTCATCATCGCGTTCCAACAGCGGCCGTATGTGCCTCACCC
GTGAATAACCGTCACCACTCTACGACTGCAGCCTGCTGCTTGTGCGTTGA
TCGCTGACGACCGAGCGCTCTGGTTCATTGGTTGATTTTGTTTTTCGGAA
AACCCGACGGGGAACGAACGCCGAACACGTACAAAAGATGGGGAGACTGG
AGGTGCAACGCTCTGTCTTTCGCGGGTATGGTGAGCGTGTGCAGGTACGC
CGCGAGCTTGGAGCGGGAGGAACGAGAACCCCTTCTCGAAAGCGCCTTCT
TCGTGGCTCTGATTGGCCAAGGCTTCGGGACCCTGTCGGGTGAGATACTT
TCTATCTTTGAGGTCGACAGCAGCAGCGTGACGGGTCTGAAGACCGCCGT
AAGGTCGTCGCGGAGAACGCGACCGAACGTCAGTGCGGACACGACAATGG
TGGCGTGCAAGCGCACCAAACAATTGTTGTGAGCATACACGACAAGACGA
AATGGAGGGTAGCCTTCTTGAAATTATCCACAATTTCGGGTGAAAAAAAT
GAAGGCCTTCTCTCTTTCTTGTGTTCCTGTTCTTGGCGCCTCTACTGTAC
TGCTGTACAGAGTATGTTTTTGCCTTGTTTTGTAACTTCGGTTAGCGTTT
TCCCCTCTCGGTGTGAACGACTTTTTCTTGGATTGGAAGGCTTGGCTGTT
CACCAGCTTTTCGGCCAAATGTTGTAAAATGGCTTTTGTAGGAAAAGTTC
GCACCCGTTTTCTTAGAGCCCTACTCACGCACGGTGGTCAATGATAGAAA
AACAATTGTGATAATGTATTGACACATTTTGTAGTTGTCTGCCGTTGTTG
TTGTTTGCTGTTGCTGCTGCTGTTGTTGTTGTTGTTGTTACAAAGCGCCC
GAGATGTGCAGAGCTGACGTCCAGAGTACACTGCTGTAGCAGATGAGATA
AAAACACGCATATATGATACACAACACACATTTTGGTGTGTTTCCTATTT
TATTATACTTTTACCTGCACCAGGGTACTCCTCAAGCAGCGTCACGATCT
TCACGAGCAGAGCCTGCCCACCTTCCCTTTTCGCATCATGAGCTTGTGCT
TGGTTTTCTCATTGTGCACCATTCACGCCACGAAACAAAATTGTCGTCGT
CTTTGTTTTTGTTTCCTTCCGCGTTGTTTTCGTTTTGCTTTTCTCGTGAA
ATGTTTTTTCATTGGCGCTCTATTTTGGAATAAAAAGGCTTCTCCGACCT
ATCGGCGGATGCGGGCAATCTCGCTCTCAAGAGAGACTACGGGGGGGCGG
CCGCCAACATCTTCCTCAACATCGCTACCGCCGCGGTTGCTCTCCTCGCG
AGGCTCAAGGCGGAGAAAATATTCCTGTCGTAAAAATGAAGACATGCCCG
GCCTGTCACATGGTATGTACGTCGTAAAGGCCCCGCGTCCCGCCCTCCCG
CGGAAGCGCCAATCGTTTCAAGAACAATTAATCGAGGCTGAGACAGATAC
CACTCTACCAGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig10:40222..45234-

>mRNA_P-littoralis_Contig10.10.2 ID=mRNA_P-littoralis_Contig10.10.2|Name=mRNA_P-littoralis_Contig10.10.2|organism=Pylaiella littoralis U1_48|type=CDS|length=903bp|location=Sequence derived from alignment at P-littoralis_Contig10:40222..45234- (Pylaiella littoralis U1_48)
ATGGTTCCGATTGGCGTGTCCCAAGCTGCCGCCGGAGTCCTAGCTTTCAT
CCTTACGGACGCCTTGCTACCGCAGTGGGAATGGAGGGGGCTTGATGTGT
CAGCGACGTTCCTCAACATATCCGGGTCGTTTGTGGCCGGGCTGGCCAAG
GGTGGCGGGGATGCAAAGGAGGACAGCAATAGCGTTGAGGTCCAGACAGC
AATCTCGATAGTCATGAACGGCTTTCTCGCGGTGTGGACCAGTTTGTTGT
TCACGGTGGAGCACGCGGCTCACCTGGCTGTCGTCACCTCTCCAGGAGCC
GGAGCGTTGTATCTCCTGGGCTCCATCCTGCTAGGCTGGGGGAGTTACAT
GCTGGCGCACTGCTTGGGGAGGCGATGGAGAGTCTCCCGGAAGGCGGTCG
ATTGGGCGAAGAGGGGCCCGCTGTGGCTGTGTAAGGGGGTGGAGAGCACG
GCGCTGTTGGGGTTGGTGGTGGCCGTGGCGTGGGGAGGCTGGATGACCGG
TCAGCACCCTCATCGGCTCGGCTGGGGGGTCGTTATGGCAGTCATTGGCG
GCATAGTCGGCAGCTGGTTCTCCGGTTTGAACGGGGGATCCGAAGGCAGA
ATAAAATGGGGAGACTGGAGGTGCAACGCTCTGTCTTTCGCGGGTATGGT
GAGCGTGTGCAGGTACGCCGCGAGCTTGGAGCGGGAGGAACGAGAACCCC
TTCTCGAAAGCGCCTTCTTCGTGGCTCTGATTGGCCAAGGCTTCGGGACC
CTGTCGGGCTTCTCCGACCTATCGGCGGATGCGGGCAATCTCGCTCTCAA
GAGAGACTACGGGGGGGCGGCCGCCAACATCTTCCTCAACATCGCTACCG
CCGCGGTTGCTCTCCTCGCGAGGCTCAAGGCGGAGAAAATATTCCTGTCG
TAA
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