mRNA_P-littoralis_Contig1.370.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.370.4
Unique NamemRNA_P-littoralis_Contig1.370.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: D8LI35_ECTSI (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI35_ECTSI)

HSP 1 Score: 719 bits (1857), Expect = 4.670e-256
Identity = 372/474 (78.48%), Postives = 396/474 (83.54%), Query Frame = 1
Query:   52 MDFGEASDDEADRRKVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPG--GGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGS--GSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXA--AVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGKIISGGEDGAVKTYTVPERNND 1455
            MDFGE SDDEAD  KVRVKFVTK+PSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQR+ALSGEAVLEVEYLPALRQPTEAEHA+QPDWVS  AGAG GLETFVTGCYDGCLRVYGP CKVTSL KAH  PVTALCAVP+   G  GG HAAGFLSGSKDMTARLWR AGSG N+SLE  A+LRGHANSISA HA ++G+G   G+   YTGDWSG VC+WD ACL    A+ +   G            XXXXX        V++ T PLA+FRAHAQAVTGLAGP G            + TLYSASLDRAVKTWDAERQDC+HTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR QGETLTRASLSSHKQW+T VKWAPGSETMVLSC+ DG+VKLWDIRSTLPLHSAQAH+GKALCCGWQDGKI+SGGEDGAVKTY VPERN+D
Sbjct:    1 MDFGEPSDDEADAGKVRVKFVTKVPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRHALSGEAVLEVEYLPALRQPTEAEHADQPDWVSAVAGAGAGLETFVTGCYDGCLRVYGPGCKVTSLEKAHQAPVTALCAVPSLAGGRPGGAHAAGFLSGSKDMTARLWRRAGSGGNSSLEAAAILRGHANSISAAHAAASGSGDSGGAPRAYTGDWSGHVCLWDVACLEGGHADGDDAQGTKRRKTDTGAAAXXXXX--------VTELT-PLASFRAHAQAVTGLAGPGGVGRPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTGVKWAPGSETMVLSCSHDGSVKLWDIRSTLPLHSAQAHRGKALCCGWQDGKIVSGGEDGAVKTYVVPERNHD 465          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A6H5KQ32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ32_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 1.240e-106
Identity = 157/183 (85.79%), Postives = 163/183 (89.07%), Query Frame = 1
Query:  913 PLAAFRAHAQAVTGLAGPRGXXXXXXXXXA--AVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGKIISGGEDGAVKTYTVPERNND 1455
            PLA FRAH+QAVTGL GP G            + TLYSASLDRAVKTWDAERQDC+HTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR QGETLTRASLSSHKQW+TDVKWAPGSETMVLSC  DGAVKLWDIRSTLPLHSAQAH+GKALCCGWQDGKI+SGGEDGAVKTY VPERNND
Sbjct:   33 PLAGFRAHSQAVTGLVGPGGVGGPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQDGKIVSGGEDGAVKTYVVPERNND 215          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A836CE58_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE58_9STRA)

HSP 1 Score: 300 bits (769), Expect = 1.680e-91
Identity = 202/500 (40.40%), Postives = 251/500 (50.20%), Query Frame = 1
Query:   94 KVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDP-------------------PTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVST----AAGAGEGLET-----FVTGCYDGCLRVYGPD--CKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASL------------EPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWD-AACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTG--LAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCL---GCSDSGR---MLATGHPDARVRIWDTR-KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGKIISGGEDGAVKTYTV 1437
            +VRVKFVTK+ SIRVT+ P+AVPE+L RYGLSEVVNHLLG +                    P PFD+L+ GRFLR+SL   M+ +A+SGE VLE+EYLPALRQPTE     QPDWVS     A  AG G E        + CYDGCLR+YG      +    +    P+TAL A                    D   R W +A                    E  AVL GH NS++AV    AG   G+    +GDW GR+C+WD AA  G   A+AE+ G                          V  +  P A F+AH+QAVTG  LAGP              TLY+ S D ++K WDA+RQDCV T+   KAV C+   G  D+     +LATGHPD R+R+WD R K GETLT A+L++   W+  VKWA GS                   S   L +  AHKG ALC  W  G + SGG+DG V+T+ V
Sbjct:   29 QVRVKFVTKLASIRVTDLPIAVPETLGRYGLSEVVNHLLGLNADTSAAAAAPHDAAPPSSKAPIPFDILIDGRFLRTSLARYMRAHAVSGETVLELEYLPALRQPTEESADTQPDWVSALAACAGAAGTGGERVAGPFLASACYDGCLRLYGASGGLDIAHSARVSAQPLTALAAXXX-----------XXXXXXDDAERCWLLAXXXXXXXXXXXXXXXXXXXXEQAAVLSGHQNSVAAVSFSPAG---GTHTAASGDWDGRMCLWDLAAAQGAAGADAEAGG-----------PGVKRRKRAAGEADAVVVELEPTAVFKAHSQAVTGVYLAGPD-------------TLYTGSWDHSLKAWDAQRQDCVRTMACAKAVACMDAQGGDDAAAASGLLATGHPDGRIRVWDVRTKAGETLTLATLAARGGWVYGVKWAHGSAYNXXXXXXXXXXXXXXXXSGAALRTLPAHKGAALCVAWHAGGVASGGDDGVVRTFKV 490          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A8K1CSP5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSP5_PYTOL)

HSP 1 Score: 251 bits (641), Expect = 1.580e-73
Identity = 166/460 (36.09%), Postives = 227/460 (49.35%), Query Frame = 1
Query:   79 EADRRKVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR--KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGK-----IISGGEDGAVKTYTV 1437
            +++  +VRVKFVTK  +IRVTETP AVP  L R GLS+VVNHLL    P PFD L+ G FLR+SL   MQR A+S E++L +EY+ AL +P +      PDWVS  + A    +  VTGCYDG +RVY    +  +  KAH   V A+           G      S  KD   ++WR   + S+  L  VA L GH NS+  +   S G  +      TG W   V +W    L ED      N G                         V  + I       H   VTG+A                 + S + DR V+ WD     C  TL   +A+T +  + +G +L T HPD  VR+WD R  + GE + + +  SH +W++ V+W   +E +  SC  DGAVK+WD+RST+P+H+  AH+GKAL   W+         +SGGED  +K Y+V
Sbjct:    2 DSEGPQVRVKFVTKNAAIRVTETPFAVPTRLNRQGLSQVVNHLLNTTTPRPFDFLIDGVFLRTSLDKYMQRNAVSEESLLILEYVEALPEPEQKNETNHPDWVSAVSVA---KDVIVTGCYDGQVRVYDLKGECLASVKAHQGAVKAVSVQFIQ-----GKEYRITSSGKDQMGQVWRF--NASSKQLSAVAALTGHLNSVDTIQLHSGGRQA-----LTGSWDNTVRVWH---LPEDD-----NAGEDDEAQPKKKQKNSAKSSGTVSFRQVEAEII----LTGHTSYVTGVA---------FHPTQEDYVVSGASDRTVRFWDLTTHLCKQTLTGNRAITDISVNANGLVL-TAHPDNCVRLWDPRASQSGENIVQKTFQSHTEWVSAVEWHQQNENLFASCGYDGAVKVWDVRSTVPIHTIAAHEGKALDVAWRPVSEPAVAFVSGGEDKQLKVYSV 424          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A2D4C6Q8_PYTIN (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6Q8_PYTIN)

HSP 1 Score: 256 bits (653), Expect = 2.010e-73
Identity = 171/480 (35.62%), Postives = 240/480 (50.00%), Query Frame = 1
Query:   58 FGEASDDEADRRKVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMW------------DAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVS-DQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR--KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDG-----KIISGGEDGAVKTYTV 1437
            F  ++  +++  +VRVKFVTK  +IRVTETP AVP  L R GLS+VVNHLL    P PFD L+ G FLR+SL   MQR+ALS E++L +EY+ AL +P++      PDWVS  + A    +  VTGCYDG +RVY  +    +  KAH   V A+            +     S  KD   ++WR   + +   L  VA L GH NS+ A+ A+ A A        TG W   V +W            DA    +  ++A+S+G                          VS  Q         H   VTG+A              A  + SA  DR+++ WD     C  T+   +A+T +  + +G M+ T HPD  VR+WD R  + GE+L + +  SH++W+  V W P +E + LS   DGAVK+WD+RST+PLH+  AH GKAL   W+         +SGGED  +K ++V
Sbjct:  163 FTTSAAMDSEGPQVRVKFVTKNAAIRVTETPFAVPMRLNRQGLSQVVNHLLNTAEPRPFDFLIDGNFLRTSLEKYMQRHALSEESMLTLEYVEALPEPSQKNETNHPDWVSAVSAA---QDIVVTGCYDGQVRVYDLEGNCLASVKAHQGAVKAVSVQLAKQ-----NVFLITSSGKDQMGQVWRF--NAATRQLSAVASLTGHLNSVDAI-ALDARAER----ALTGSWDNTVRVWMVPSGSEAVEVSDAQPKKKQKSDAKSSG-------------------------VVSFSQLEAEIVLVGHTSYVTGVA---------FHPTDAHQVVSAGSDRSIRLWDLTTHQCKQTMKGNRAITSVSVNANG-MVVTAHPDHCVRLWDPRATQNGESLVQRTFQSHREWVNAVSWHPTNEHLFLSGGYDGAVKVWDVRSTIPLHTVAAHDGKALDVAWRPVDEPAVSFVSGGEDKQLKLFSV 592          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: D0NDP0_PHYIT (Ribosome biogenesis protein WDR12 homolog n=12 Tax=Phytophthora TaxID=4783 RepID=D0NDP0_PHYIT)

HSP 1 Score: 241 bits (616), Expect = 7.850e-70
Identity = 171/461 (37.09%), Postives = 232/461 (50.33%), Query Frame = 1
Query:   94 KVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGR-DPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGP--DCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFL--SGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLA-AFRAHAQAVTGLA-GPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRKQ--GETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGK----IISGGEDGAVKTYTV 1437
            +VRVKFVTK  SIRVTETP AVP  L R GLS+VVNHLL   D P PFD L+ G FLRSSL   +Q   +S EA+L +EY+ AL +P +   ++ PDWVS  A   +  E  VTGCYDG LRVY    DCK +   KAH   V A+    +        +  F+  S  KD  A+LWR     S   L P+A L GH NS+ AV   +    SG+ +V TG W   V +W      EDS+E  S+                           VS + +        H   VTG+A  P+              + SA  DR+V+ WD   Q C   L   +AV+ L  + +G +L T HP         R Q  GE++ + +  SHK+W++ V W P +E + +S   DG  K+WD RST+PLH+  AH+GK L   W++ +     ++GG+D  +  + V
Sbjct:    7 QVRVKFVTKDGSIRVTETPFAVPSRLNRRGLSQVVNHLLATGDSPRPFDFLIDGLFLRSSLDKYLQTNDVSEEALLTLEYVEALPEPQKQNGSDHPDWVSAVASLDD--ELVVTGCYDGVLRVYDAQGDCKAS--VKAHQGAVKAVSVSSS-------KSGEFVVASSGKDQLAQLWRYTVKSSK--LSPLAALTGHLNSVDAVQLHA----SGNRVV-TGSWDNTVRVWQTPNGSEDSSEQRSS---------------KKHKKTEDDAGAVSFRQLEAEIVLVGHTSYVTGVAFRPKTSEHDED------VVVSAGSDRSVRLWDLVTQSCSQALAGNRAVSDLTVNATGLIL-TAHPXXXXXXXXPRAQQSGESIVQRTFRSHKEWVSSVSWHPSNEHLFVSGGYDGTAKVWDARSTIPLHTVSAHEGKVLDLSWRNQEESVAFVTGGDDKKLNFFNV 427          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A5D6YFB0_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFB0_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.290e-69
Identity = 176/457 (38.51%), Postives = 241/457 (52.74%), Query Frame = 1
Query:   94 KVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCA--VPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR--KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGW--QDGKII---SGGEDGAVKTYTV 1437
            +VRVKFVTK  +IRVTETP AVP  L R GLS+VVNHLL    P PFD LV G+FLR+SL   + ++  S EA+L +EY+ AL +P +   A  PDWVS  A A  GL   VTGCYDG +RV+    +  +  KAHH  V A+    VP              +  KD T +LW      +   +  +A   GH NS+ AV     G  +      TG W   V +WD       +A + +   XXXXXXXXXXXXXX           +  + + +     H   VTG+A                 + S + DR+V+ WD     C  TL   +A+T +  +  G +L+  HPD  VR+WD R  + GE+L + + SSHK+W++ V+W P   T+  S + DG+VK+WD RS++PLH+  AH GKAL   W  +D   +   SGGED  +K ++V
Sbjct:   10 QVRVKFVTKDAAIRVTETPFAVPARLNRQGLSQVVNHLLNLPVPRPFDFLVDGQFLRTSLEKYLLQHGASEEALLTLEYVEALPEPEKQREANHPDWVSAVAAAHTGL--VVTGCYDGHVRVHDAAGECVAALKAHHGAVKAVSVQRVPEKK-----REFVIATSGKDQTGQLWLF--DAAKKRISALAAFTGHLNSVDAVALRVTGEQA-----LTGSWDNTVRVWDTK-----AAVSAAXXXXXXXXXXXXXXXXXASGASAVSFRQLEAEVVLVG----HTSFVTGVA---------FHPQHEHLVVSGASDRSVRVWDLTTHSCAQTLTGNRAITDISVNADGLVLSA-HPDHCVRLWDPRASQAGESLVQRTFSSHKEWVSAVEWHPTRATLFASASYDGSVKVWDARSSVPLHTLAAHDGKALDVAWRLEDAAHVAFASGGEDKQLKFFSV 433          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A1V9ZBE6_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBE6_9STRA)

HSP 1 Score: 239 bits (611), Expect = 2.500e-69
Identity = 162/452 (35.84%), Postives = 220/452 (48.67%), Query Frame = 1
Query:   94 KVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFV-TGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTR--KQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGK---IISGGEDGAVKTY 1431
            ++RVKFVTK P IRVTETP AVP  L R GLS+VVNHLL    P PFD L+   FLR++L   + +  L+ EAVLE+EY+ A  +P      + PDW+S  A  G     FV TGCYDG LRV+       +  KAH   + ++            +    ++GSKD T + W++    SN  L  V V  GH NS+  V           AI   GD++              +AEAE+                             ++  + L    A   AVT                 + T YSA++DR++K WD   + C  T+     ++ L  S SG M+ T HPD  +R+WD R  K G TL + +  SHKQW++ V+W+  SET  LS   DG VK+WD RS++PL +  AH GKAL   W  G+    +SGGED  +K Y
Sbjct:    7 QIRVKFVTKNPEIRVTETPFAVPIKLARAGLSQVVNHLLATAEPKPFDFLIDDNFLRTTLEKYVVQNNLNDEAVLELEYVEAHLEPETKHSQDHPDWISAVAAHGG----FVATGCYDGILRVFTTAGAPVAQIKAHDSVIKSVAM----------NGNTIVTGSKDHTLKTWKL----SNGKLTAVGVGAGHLNSVDTV-----------AIDAEGDFALXXXXXXXXXXXSLAAEAEAT---------DKSVKKQKTAGGTKASLVQAEAKLVLPGHTAAVVAVT------------FDPTDSSTAYSAAMDRSIKLWDLSLERCKQTMAGSSTISALSVSTSG-MVLTAHPDTAIRLWDPRAAKTGTTLVQKTFQSHKQWVSAVQWS--SETQFLSAGYDGTVKMWDARSSIPLFTLAAHAGKALDAAWIQGEKPAFVSGGEDCQLKFY 405          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A1Y1IFE5_KLENI (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFE5_KLENI)

HSP 1 Score: 238 bits (607), Expect = 1.530e-68
Identity = 151/454 (33.26%), Postives = 218/454 (48.02%), Query Frame = 1
Query:   85 DRRKVRVKFVTKIPS-IRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCS-DSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGW-QDGKIISGGEDGAVKTYTV 1437
            + R+V+V+FVTK+P   RVT    AVP  L RYGLSEV+N LL  +   PFD LV G  LR+SL S++    LS E  L +EY+PA+  P         DWVS   G     +  V+GCYDG  R++    +  +  + H   +T+   +P         +   ++ SKD T R+W++ G+ S  S +   VLRGH+ +I +V A  +G       V +G W   + +W  +   ED   A                                +          H+Q V+ +   R           A T++SAS D +V+TWD +      T+   K +  L    + G +LATG  D  +RIWD+R    T +   L SHK WIT VKW       +LS + DG VK+WD+RS +PLH+ QAH  KALC  W Q+  I+SGG D  ++ + +
Sbjct:    7 EERQVQVRFVTKLPEEYRVTNASFAVPARLTRYGLSEVINSLLSTEKLRPFDFLVGGELLRTSLESLLVSKKLSAETTLTIEYIPAVGLPKPVSSHVHDDWVSAINGTSP--DVLVSGCYDGVARLWSSSGEALTSLQGHSDAITSTAVIPR-----ASGSCDVITASKDRTLRVWQVKGTDSQPSGDLHQVLRGHSAAIQSVVASPSGNE-----VASGSWDTTIKVWSVSRDAEDGGSAPKR---------------QRVEDSGAAPAGEQEAREARVTLEGHSQCVSAVDWSR-----------ADTIHSASWDHSVRTWDVQAAVNTSTITGSKVILALSVGGEGGALLATGGADPAIRIWDSRDSSSTGSAIQLLSHKGWITAVKWHKTRTHQLLSTSHDGTVKMWDVRSKVPLHTVQAHTVKALCVDWFQEATIVSGGADNQLRFHAL 422          
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Match: A0A7S0L654_9EUKA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L654_9EUKA)

HSP 1 Score: 236 bits (603), Expect = 8.560e-68
Identity = 156/477 (32.70%), Postives = 227/477 (47.59%), Query Frame = 1
Query:   43 AVTMDFGEASDDEADRRKVRVKFVTKIP-SIRVTETPVAVPESLQRYGLSEVVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQPTEAEHAEQPDWVSTAAGA------------GEGLETFVTGCYDGCLRVYGPDCKVTSLTKAHHLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSN---ASLEPVAVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAEAESNGGXXXXXXXXXXXXXXXXXXXXXXXXXVSDQTIPLAAFRAHAQAVTGLAGPRGXXXXXXXXXAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKWAPGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDG-KIISGGEDGAV 1422
            AV M    AS+       V+  F T++P   RV++ P+++P  L RYGLSEV+NHLL  +   PFD +V G  LR SL   M R+ L+GE  + +EY+  L  P  A  +  PDWVS+ A A             E +   ++GCYDG  R +GP  ++    + H   V A+C +      G G A   L+ SKD T R W    +      A  E + V  GH +S+ A  A  AG         +G W G++C+W A      +AE +                                +  PL+  +AH++ ++GL               A  LYSAS D  V+ WD   +     + + KAV CL  S +   + TGH D  +R+WD R++G  L+     +HK W++ V WAP    ++ S + DG+V+LWD RST+PLH   AHK K+LC  W    +++SGG DG +
Sbjct:    8 AVGMASASASEPH-----VQCIFTTRLPPQWRVSDAPLSLPTRLSRYGLSEVINHLLSTETTRPFDFVVNGELLRGSLEKAMTRHGLTGEQAVMIEYVELLAPPNLACDSNHPDWVSSVASARTHAMLSGDPTASERVPLVLSGCYDGSGRAWGPGGELVCTMQGHTSGVKAVCWL------GRGLA---LTASKDRTLRAWSFQSAAKEQLTAKCEQLYV--GHTDSVEAACANPAGDR-----FCSGGWDGQLCIWRAPDTSVSTAEVDHE------------------PAAKRARTPAVSEAHPLSKMQAHSECLSGLC-----------WRTAALLYSASWDGTVREWDVNAESSTSAVTSQKAVLCLDVSLASASIVTGHSDHCLRVWDVRQRG--LSARLTLAHKSWVSGVAWAPHQPLLLASASHDGSVRLWDTRSTVPLHELPAHKPKSLCVSWDGSDRLVSGGADGVL 432          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.370.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI35_ECTSI4.670e-25678.48Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A6H5KQ32_9PHAE1.240e-10685.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CE58_9STRA1.680e-9140.40Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A8K1CSP5_PYTOL1.580e-7336.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C6Q8_PYTIN2.010e-7335.63Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
D0NDP0_PHYIT7.850e-7037.09Ribosome biogenesis protein WDR12 homolog n=12 Tax... [more]
A0A5D6YFB0_9STRA1.290e-6938.51Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A1V9ZBE6_9STRA2.500e-6935.84Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A1Y1IFE5_KLENI1.530e-6833.26Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]
A0A7S0L654_9EUKA8.560e-6832.70Ribosome biogenesis protein WDR12 homolog n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1615945..1622255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI35
Preferred nameYTM1
PFAMsNLE,WD40
Model size1853
Max annot lvl2759|Eukaryota
KEGG koko:K11578,ko:K14863
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000460,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009506,GO:0009605,GO:0009607,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022613,GO:0030054,GO:0030447,GO:0030684,GO:0030686,GO:0030687,GO:0031461,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0036170,GO:0036180,GO:0040007,GO:0042221,GO:0042254,GO:0042273,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044182,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046689,GO:0050896,GO:0051276,GO:0051716,GO:0055044,GO:0070013,GO:0070545,GO:0071496,GO:0071704,GO:0071840,GO:0080008,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:1990904
Exons8
Evalue5.43e-259
EggNOG OGsKOG0313@1|root,KOG0313@2759|Eukaryota
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-04_003080.1
Descriptionribosomal large subunit biogenesis
Cds size1407
COG categoryJ
BRITEko00000,ko03009,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.370.4prot_P-littoralis_Contig1.370.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1616340..1622204 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789322.3916862-UTR-P-littoralis_Contig1:1615944..16163391680789322.3916862-UTR-P-littoralis_Contig1:1615944..1616339Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1615945..1616339 -
1680789322.487286-UTR-P-littoralis_Contig1:1622204..16222551680789322.487286-UTR-P-littoralis_Contig1:1622204..1622255Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1622205..1622255 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789322.4039736-CDS-P-littoralis_Contig1:1616339..16165251680789322.4039736-CDS-P-littoralis_Contig1:1616339..1616525Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1616340..1616525 -
1680789322.4137897-CDS-P-littoralis_Contig1:1617080..16172221680789322.4137897-CDS-P-littoralis_Contig1:1617080..1617222Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1617081..1617222 -
1680789322.4282484-CDS-P-littoralis_Contig1:1617732..16180251680789322.4282484-CDS-P-littoralis_Contig1:1617732..1618025Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1617733..1618025 -
1680789322.438086-CDS-P-littoralis_Contig1:1618618..16188261680789322.438086-CDS-P-littoralis_Contig1:1618618..1618826Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1618619..1618826 -
1680789322.4473014-CDS-P-littoralis_Contig1:1619206..16193581680789322.4473014-CDS-P-littoralis_Contig1:1619206..1619358Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1619207..1619358 -
1680789322.4548974-CDS-P-littoralis_Contig1:1619564..16196661680789322.4548974-CDS-P-littoralis_Contig1:1619564..1619666Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1619565..1619666 -
1680789322.4626784-CDS-P-littoralis_Contig1:1620295..16205741680789322.4626784-CDS-P-littoralis_Contig1:1620295..1620574Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1620296..1620574 -
1680789322.4777691-CDS-P-littoralis_Contig1:1622159..16222041680789322.4777691-CDS-P-littoralis_Contig1:1622159..1622204Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1622160..1622204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.370.4

>prot_P-littoralis_Contig1.370.4 ID=prot_P-littoralis_Contig1.370.4|Name=mRNA_P-littoralis_Contig1.370.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=469bp
MDFGEASDDEADRRKVRVKFVTKIPSIRVTETPVAVPESLQRYGLSEVVN
HLLGRDPPTPFDMLVMGRFLRSSLRSVMQRYALSGEAVLEVEYLPALRQP
TEAEHAEQPDWVSTAAGAGEGLETFVTGCYDGCLRVYGPDCKVTSLTKAH
HLPVTALCAVPTWPPGGGGHAAGFLSGSKDMTARLWRMAGSGSNASLEPV
AVLRGHANSISAVHAVSAGAGSGSAIVYTGDWSGRVCMWDAACLGEDSAE
AESNGGGASATQGAKRRKTGESGSAAAAAAAVSDQTIPLAAFRAHAQAVT
GLAGPRGGGGGGGGQAAAVTLYSASLDRAVKTWDAERQDCVHTLNAPKAV
TCLGCSDSGRMLATGHPDARVRIWDTRKQGETLTRASLSSHKQWITDVKW
APGSETMVLSCAQDGAVKLWDIRSTLPLHSAQAHKGKALCCGWQDGKIIS
GGEDGAVKTYTVPERNND*
back to top

mRNA from alignment at P-littoralis_Contig1:1615945..1622255-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.370.4 ID=mRNA_P-littoralis_Contig1.370.4|Name=mRNA_P-littoralis_Contig1.370.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=6311bp|location=Sequence derived from alignment at P-littoralis_Contig1:1615945..1622255- (Pylaiella littoralis U1_48)
GGCAGGGTCCACTCTCCAGCCCAGACGCCAACACCTTTGACTGCTGTGAC CATGGATTTCGGCGAGGCATCGGACGATGAGGCGGATCGTAGGAAGGTGA AAACACTCTTTTTCATAGGGACAAGAGTAGCTGTTGCCAAGGTGCTCACT CGAGACGCAAAACCCAATGGTGCTTTGTTCAACAGGAGATCAATTGCTGT CCACAGCTACAGCGGTATCAAATGTATCATACTGGTAGCTCTGTATCTTT CGTCCCACTGGCACTGAGAGGGTACAGAGGTATCATGCCTTCAACGTGTC TTGGGGGCACCTCCCTTTATCGAACAACATTATTTGGTACCGCAGGAACG TGATGATGAGATGAAGCGTACGCTGTGAGCTCCACAATACATACTCGTAC AGTAAGAAGGACGGCCGTAGATTGGTCAATCCAGCGAGAGGCTGGAAGCG GCGGAATATCGGCAATCGCCGTGCGCCATGGTTTTCAGCTCGATGTAAGT ACAGTATACAATAATGCCAGGTACGTTAGCAGTTACGCCTCTTTCTCCTA TACTATTGCAGAAACCACATGATTTACGCAGTTTGGAAGTAGCTGAGAGT GCTCCAGTAGAAGGCGGTAGATACGAATTTGGACATTTTGGAGATTGTTT ACCCCCATGTATGATGCTCCAAATGTAAATGCAAGGTTTTGTCACACTTC AAAAGTGTCGAGTGATCTGCTTTCCTAAAAAGTCCAGGGATAACAGAGAG GCCCTCTCAGCAACTGCCCGCTTGCTCTCTTAGAGCTTCTAGCTGAAACT GCAGGCTCCTTGCCGCTATTATATCATGGCAAGAACGCACATAAACGAAT TACCCACCCTTTTCCCCTCGTGTGATGAACCCCTCTTTAAGGCCGCGCTG GGGGGGGACGCCCTTCATATCCTCCCCTCCCCGGTTGAACCCTTATGATA TCATAGGATATGCAAACCTCTTCATCTTATCACATGAATCAAAACAGCTT GAATTCCTCTACGATATCGATTGCATCCCTGCAGCTTCCCAAGTAGAGGC TTTGAAGCGCGAGATCAAGGTGCTCACATTTTGGTTTTGAGCACCATCTT CCTGCATACGGTACAAATTGGAGAAAACCCCGGAACACTTTGCTTCAGTT GCGGACAGCACAAGCTCGCCACAGGCAACCACACTGCTCGAAATTGCCAC AGCCTTCCAACCGTGGTGGGCGAGTGATGTCCCATGCCTTGACAGCAGCA GCAGGCAGGCAGAAACGATTTTAGAGGATTATATGAACTTGGATCTGTAT CTAGATGTATGCAGCAGTCCGGTGTTGCACCGACCTGGTAGACCTGCTGG TTACGTTTGCGAGATGCTTCCGTTCTCTCCATGTGTGTATGTATGTTGGA TGAAAAAACGAACTATACGCGAATTTATCTGGCTGATCGGGCGAGTCTTT GCAAAAGCCAAATAGATTAAGAGGTTTGAACGCGGACGGAGAACGAAATT GCGATCTACGCCCAAAAATAGCTATTGGATGACAAATAAAGCCGCACTTG TGCAAATCCCTGACTGTACAGCAGTACGTTCAAGATTTTTTTTTATTATT CTTGTACCAAACCAAGCGCGCCCGTAACGTGTCCTGTCCCCTTAAGAACA ATGTAAACCCCTTTAACCTAACGAATATTAGGTGCGAGTGAAGTTCGTTA CGAAGATACCTTCCATACGAGTCACCGAAACCCCTGTAGCCGTCCCGGAA AGCCTGCAGCGCTATGGTTTGTCAGAGGTGGTGAACCATCTTCTTGGGCG CGACCCGCCAACGCCATTCGACATGCTGGTGATGGGCCGCTTCTTGCGCA GCTCGCTCCGGTCGGTGATGCAGAGGTACGCGCTGAGCGGGGAGGCGGTG CTGGAGGTGGAGTACCTGCCTGCGCTTAGACAGCCTACGGAGGCGGAGCA TGCCGAACAGGTGTGACTGGTTGTGGTGGTGTAAGTGATGTCAATTGTGA TGGTGATGGTGGTGTTTGACGCTACTGTACAACTGCTGTTGTTGTCGATG TTGATGTGTCATTTCTCTGCACACAAGGTCGTGCTAGGTTTGGAGTACTG TATTTTATTTTTTTATTTTTTTTCCTCCTAGCACGATATGTGCCTGGTTT GTGACCACGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACA ACAACAACAAACCTGCCAGCGCTTCGAGAGCCGACGCGGGGAAGTATCAT ACAAGGATCAGAAATATGTCGATGAATGTTTGCCGGTTGGTGCAGAGCAG TGTTGCGAGGAGGGAGAAAAAAAACCCTAACGAACATTGGTGCCGGTGGC GGTGGCGGTGGAATCGCTTTCAAGCACTGATATTTAGAATCAGCTCATAG CGGATGGTTTAGGTGCTTAACTTCTGTGTGTTTAACATATCATTTGTCTG TTGTTTTCCCTCGTGGTTGCCCCTCGGCTCCTTTGGCCCCCTTCTCTCCC CCTCTCTCTTTGTCTCTCGTTGCGTGTGTCTATCTCGGCCCCTTTTCATC CTCTTTATCTTTCTTGCTGTGACCGCGCTTGCACGGTAGCCTGATTGGGT AAGCACGGCAGCAGGTGCCGGGGAGGGTCTGGAGACATTTGTGACCGGGT GCTACGACGGCTGCCTGCGAGTCTACGGCCCTGACTGCAAGGTCAGCGGA AGCACTACCCATGTGATCACACAAAGTGTCGTGCTCTGTTGTACCCTCAA GCTGTGTCACACCGAATGTAGGATACCCGAGCCAGGTTGCACATCTTGAA AAGAGACTTGCGATGAAAAGTCAAATGACAAAAGTAAGGCATTGGGTGAC CACCTACCCCCCAACACGCCCAACACGCCCAATTCGCCGCCAACAAGGTA ACGTCTTTGACAAAAGCTCACCACTTGCCAGTGACGGCGCTTTGTGCCGT GCCGACTTGGCCGCCCGGTGGGGGAGGACACGCCGCGGGGTTTTTGAGCG GCAGCAAGGACATGACGGCAAGGTTATGGAGGATGGCGGGATCTGGAAGG TGAGGACGGGATGATATTGAGTGTGCTGTAAGCAAGCCCGGGTGCGGGGG GGGGGGGTGTTGCAGTAACCGGCATCCTCTTTGTGCGTGTAGTTGTGTTC TTGAGGCTGTGTCTGCACGCATGTCTGTCTATCTGTATACATACCTCTAT GTTCCTGCATTCGTTTGGATGTGCTGACCGTCATAATTTTGATTGCCTGT CTGGCTGCGGTTCCCCCGCCCATACCCTTTTGTGTGTGCCGATTCCAGCA ATACTCTTTTCCGCATGCATGCTCCCACACTGGTCATGCACATGCTGCAA TGAAACCTCCTGCCCCTCTTGTTCGTGTGTGCGCGTGTTTCTTCTGTGGG CTGTTCGCTTTCGTGTCTAATTATTTCAGCAACGCTTCGTTGGAGCCGGT AGCCGTTCTCCGAGGTCACGCCAATAGCATCTCGGCGGTGCATGCCGTCT CGGCGGGCGCCGGCAGTGGGTCAGCTATAGTATATACCGGCGATTGGAGC GGCCGCGTGTGTATGTGGGACGCGGCCTGTCTGGGGGAAGACAGTGCGGA GGCGGAGAGTAACGGTGGTGGCGCTTCCGCAACTCAGGTATGCGTATTCC TCTCTCTCGCGCAAGCGTAAACTTTTTCTATACTTCGACCGGTATTGGCT ATGGTTTTCGGTGGTGGTTTCGTTGTGCGAAAGGGGTGTTGTTCTTGGTG CCGGCGATACCGCTCTTACTGCTGTGCTCTTTTTTTCTGTTGGTCTAGAG CTTGGGGAACGGACAGGCACACTTTTTCGTTTGTTTGTTTTTAGTTTTCC CGAAACATCCTACAACCTGGGACATGGTGAATATCAATGGAGCTCAAAGC TGAATATCGTCGTTTACCATAACGGATGTGACTCCCCAGGTGAAGATCCA CACTCGCATGGTCACTATTTATCCATATACGAGAGTACTTGTACAGGAAG AAACGGGAGGGAGCGTTGCTTTAATCAAAAATATGTGGTCGCCAAATATA TTTCAGCATGTTGGCTTCCTCCACGCTGTCTGCAGATTTCCCGTGTTCAA GCACGGCGTCCGTGCACTCCATGTAGCCCACCCACGCATGTCCCTGTCCG CGGACACCGCGTACGTCGCCTTCACCGTTCTCGTCTTGTCTGGCACGGTG TGTTTTTGCACTTCGGGCTGTATCATGCAGGGGGCAAAGCGGCGGAAGAC GGGAGAAAGTGGTTCAGCCGCAGCGGCGGCCGCAGCGGTTTCCGACCAGA CGATACCTCTGGCAGCCTTTCGCGCTCACGCTCAGGCGGTGACAGGGTTG GCCGGTCCGCGCGGAGGGGGAGGGGGGGGGGGGGGGCAAGCGGCGGCGGT GACGCTGTACAGCGCGTCGTTGGACCGCGCGGTGAAGACGTGGGATGCGG AGAGGCAGGACTGCGTGCACACGCTGAACGCACCGAAAGCGGTCACTTGT CTGGGGTGCTCAGATAGCGGGCGGTACGTGGTGGGGCTTGGATTGTAGGT CATTGTCTTGTTTCGCTGGGGTGGCGAGCTCATAACCTACGAGAGTACGC TGTGTTATGCTTTGTGGCAGGTTCTCGATTGTGTGTTCGTTTGATTTCTC TTTACCAGGTGTGACACGGAGAGGACACTCGCTGGTCTTGTCAGCTCGTT TGTCCGCAACTTTTGGCTAGCTTCTCGACGCATTTGCTTCATTTTTCTCT CGGCTCCGTGGCGGGGCTAGGGTCGGGGTTTGGGTCGGCCGATTTCTTGT CATTTTTGTCACTTTACCTGTCACCCGCCCCCCTCCCTCACGCTCCTTAA TTATCCCTCTTCGTTTGTTGACCGTTCTTCGATTGTTAAAGTACATATCT CATATATTTTGCTCTCCCAGTTTCTTCCGTTTTCCATCTATCTAGCTGGC AAATAGCCGTTCGTCCTACAGGGTTCGCTGTTCCAGACTTGCCCGCCACT CCTGCTGCGCATGCATGTACGTGTCGATGATAGGATGCTAGCCACAGGCC ACCCGGATGCGCGAGTACGCATCTGGGACACTCGCAAGCAGGGAGAGACC CTTACCAGAGCCTCCCTCAGCTCGCACAAACAGTGGATTACGGATGTCAA GTGGGCCCCAGGGTCCGAAACGATGGTGTGTATGCGTACGTGCGTGACCG TATTCAGATGTGGGACATCATCCTCCTGACCTCAAGGGGTAGGAATGCTT CTTCCGTTTTCTGTGCGAGGCAACCCCGCTTCTGGTAAAACACTCACTTT CGGTTTCTATGATTTCAAAGGGAGGAAAGATATGCCCTGGTGGAGATGAC CAGTCGATGGACAACGAGGTACTGTAATGGCATGACAACGAGGGCTGTGG TAAGCGGTGAATGGCGGCCACACGAAGCCCAAAACAGGAAGGGGATGGCG CGAGCGACAAGTTGTTTGTTAGAAACTGCTGCATGGCAAAAAAACGTCAA GATCGCCCAAATGTCGATGGTGGCTCTATTCGGAGAAGAAGAAGGTGCTC CCGTCTCAATAGGGGTGATGCGTGGCAGACGACGGTCGGATTACCAAAGC AAGCAACAACTGAGTACTTGAATTGATCTGGGTGCAGTCGTATTCAGCTG CTGCCAACATGACGCTTTTTGATTCCTCGTCAGTCTTCCGCTCAAATATG AAATTCTTCTTTTGTCGATGTGTGTGATAGGTGCTGAGCTGCGCCCAAGA CGGTGCGGTGAAGCTCTGGGACATCCGATCCACGCTACCGTTGCACAGCG CACAGGCGCACAAAGGGAAGGCTCTCTGCTGCGGCTGGCAGGACGGGAAG ATCATCAGCGGGGGAGAAGACGGAGCGGTCAAGACCTACACTGTACCTGA AAGGAATAACGACTGAGTTTGCTCCTTGGTAAAAGTTTCATCGTTCGTCC GGGGATACCGCCAAGCCCATCCCCGGGTTTCGTTGTGTGCGGTTTCCACC TTACGTGGTGTTATTCGGAGATAGGAACGGGGTGAGAGGCGGTACTCGTA CGGAGTGTTGTTGTGATTTTTGTGGTTCGGCATCACTACGATAACCCTCC CAGTACGATGCCCTATTCTTAAATCGACTCAAGGCATTTGGGATTGGCAC CCTCTTCATTTATTGTTGTGCGCCTCCTCCCCCCACTTCTCCATTCTCCT CCCCGGTTAAGACAACGATGGCTTCTTTTTGCCACTTGAGAGTCTGTACT ATCGCAGATCCACCGCAAGGAGGAGATTTTTTTCGTTTGTTTCTGTTTTC CGCACTTGGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:1615945..1622255-

>mRNA_P-littoralis_Contig1.370.4 ID=mRNA_P-littoralis_Contig1.370.4|Name=mRNA_P-littoralis_Contig1.370.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1407bp|location=Sequence derived from alignment at P-littoralis_Contig1:1615945..1622255- (Pylaiella littoralis U1_48)
ATGGATTTCGGCGAGGCATCGGACGATGAGGCGGATCGTAGGAAGGTGCG
AGTGAAGTTCGTTACGAAGATACCTTCCATACGAGTCACCGAAACCCCTG
TAGCCGTCCCGGAAAGCCTGCAGCGCTATGGTTTGTCAGAGGTGGTGAAC
CATCTTCTTGGGCGCGACCCGCCAACGCCATTCGACATGCTGGTGATGGG
CCGCTTCTTGCGCAGCTCGCTCCGGTCGGTGATGCAGAGGTACGCGCTGA
GCGGGGAGGCGGTGCTGGAGGTGGAGTACCTGCCTGCGCTTAGACAGCCT
ACGGAGGCGGAGCATGCCGAACAGCCTGATTGGGTAAGCACGGCAGCAGG
TGCCGGGGAGGGTCTGGAGACATTTGTGACCGGGTGCTACGACGGCTGCC
TGCGAGTCTACGGCCCTGACTGCAAGGTAACGTCTTTGACAAAAGCTCAC
CACTTGCCAGTGACGGCGCTTTGTGCCGTGCCGACTTGGCCGCCCGGTGG
GGGAGGACACGCCGCGGGGTTTTTGAGCGGCAGCAAGGACATGACGGCAA
GGTTATGGAGGATGGCGGGATCTGGAAGCAACGCTTCGTTGGAGCCGGTA
GCCGTTCTCCGAGGTCACGCCAATAGCATCTCGGCGGTGCATGCCGTCTC
GGCGGGCGCCGGCAGTGGGTCAGCTATAGTATATACCGGCGATTGGAGCG
GCCGCGTGTGTATGTGGGACGCGGCCTGTCTGGGGGAAGACAGTGCGGAG
GCGGAGAGTAACGGTGGTGGCGCTTCCGCAACTCAGGGGGCAAAGCGGCG
GAAGACGGGAGAAAGTGGTTCAGCCGCAGCGGCGGCCGCAGCGGTTTCCG
ACCAGACGATACCTCTGGCAGCCTTTCGCGCTCACGCTCAGGCGGTGACA
GGGTTGGCCGGTCCGCGCGGAGGGGGAGGGGGGGGGGGGGGGCAAGCGGC
GGCGGTGACGCTGTACAGCGCGTCGTTGGACCGCGCGGTGAAGACGTGGG
ATGCGGAGAGGCAGGACTGCGTGCACACGCTGAACGCACCGAAAGCGGTC
ACTTGTCTGGGGTGCTCAGATAGCGGGCGGATGCTAGCCACAGGCCACCC
GGATGCGCGAGTACGCATCTGGGACACTCGCAAGCAGGGAGAGACCCTTA
CCAGAGCCTCCCTCAGCTCGCACAAACAGTGGATTACGGATGTCAAGTGG
GCCCCAGGGTCCGAAACGATGGTGCTGAGCTGCGCCCAAGACGGTGCGGT
GAAGCTCTGGGACATCCGATCCACGCTACCGTTGCACAGCGCACAGGCGC
ACAAAGGGAAGGCTCTCTGCTGCGGCTGGCAGGACGGGAAGATCATCAGC
GGGGGAGAAGACGGAGCGGTCAAGACCTACACTGTACCTGAAAGGAATAA
CGACTGA
back to top