mRNA_P-fluviatile_contig1.450.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.450.1
Unique NamemRNA_P-fluviatile_contig1.450.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.450.1 vs. uniprot
Match: D8LND9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND9_ECTSI)

HSP 1 Score: 224 bits (572), Expect = 2.570e-70
Identity = 113/164 (68.90%), Postives = 129/164 (78.66%), Query Frame = 1 
Query:   79 YQPKAPPRSPAPAIFRAWRQDEYGALMMQAVVQDDAEALVWMLEHNLVELAATDDLGNTAAHLAVFHDSPSPPSLLNENTELIALGYDVSLPCDGFGRPPEIVAKRHDQGAALDLVRRSLACLKLQRLTRGFLGRQKAKHIKAAWGRAAKKEVDAVESTLSGGD 570
            ++PKAP RSPAPAIF+AW+QD+YG +MMQAV+QDDAE+L WML+HNLV+LAATDDLGNTAAHL VFHD P     L + TELI LGYD+S PCD FGR PE VA+RHDQG    L+RRSLA L +QRLTRGFLGRQKAK IKAAW R A KE +       GGD
Sbjct:   58 FEPKAPERSPAPAIFKAWQQDKYGTMMMQAVLQDDAESLTWMLKHNLVDLAATDDLGNTAAHLGVFHDFPR----LVDGTELIDLGYDMSPPCDRFGRTPETVAERHDQGGVRSLIRRSLALLDVQRLTRGFLGRQKAKRIKAAWARGANKEAERTLLAGGGGD 217
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LND9_ECTSI2.570e-7068.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:5054726..5056985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-04_004200.1
Exons4
Model size696
Cds size696
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.450.1prot_P-fluviatile_contig1.450.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 5054726..5056985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815337.1390646-CDS-P-fluviatile_contig1:5054725..50548901622815337.1390646-CDS-P-fluviatile_contig1:5054725..5054890Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5054726..5054890 +
1693561549.3510652-CDS-P-fluviatile_contig1:5054725..50548901693561549.3510652-CDS-P-fluviatile_contig1:5054725..5054890Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5054726..5054890 +
1622815337.1497276-CDS-P-fluviatile_contig1:5055343..50554681622815337.1497276-CDS-P-fluviatile_contig1:5055343..5055468Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5055344..5055468 +
1693561549.477479-CDS-P-fluviatile_contig1:5055343..50554681693561549.477479-CDS-P-fluviatile_contig1:5055343..5055468Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5055344..5055468 +
1622815337.1598845-CDS-P-fluviatile_contig1:5055564..50555921622815337.1598845-CDS-P-fluviatile_contig1:5055564..5055592Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5055565..5055592 +
1693561549.4933417-CDS-P-fluviatile_contig1:5055564..50555921693561549.4933417-CDS-P-fluviatile_contig1:5055564..5055592Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5055565..5055592 +
1622815337.1718323-CDS-P-fluviatile_contig1:5056607..50569851622815337.1718323-CDS-P-fluviatile_contig1:5056607..5056985Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5056608..5056985 +
1693561549.5054595-CDS-P-fluviatile_contig1:5056607..50569851693561549.5054595-CDS-P-fluviatile_contig1:5056607..5056985Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 5056608..5056985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.450.1

>prot_P-fluviatile_contig1.450.1 ID=prot_P-fluviatile_contig1.450.1|Name=mRNA_P-fluviatile_contig1.450.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=232bp
MAQGDERNDDGSDEGGREEVATQLRHYQPKAPPRSPAPAIFRAWRQDEYG
ALMMQAVVQDDAEALVWMLEHNLVELAATDDLGNTAAHLAVFHDSPSPPS
LLNENTELIALGYDVSLPCDGFGRPPEIVAKRHDQGAALDLVRRSLACLK
LQRLTRGFLGRQKAKHIKAAWGRAAKKEVDAVESTLSGGDAIAAAIADGS
GIIVENGGSDGGGGGDGGVEGQAEAVGNSVD*
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mRNA from alignment at P-fluviatile_contig1:5054726..5056985+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.450.1 ID=mRNA_P-fluviatile_contig1.450.1|Name=mRNA_P-fluviatile_contig1.450.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2260bp|location=Sequence derived from alignment at P-fluviatile_contig1:5054726..5056985+ (Porterinema fluviatile SAG_2381)
ATGGCGCAGGGGGATGAGCGAAATGACGACGGCAGCGACGAGGGCGGGCG
AGAGGAAGTTGCGACCCAGCTGCGGCATTACCAGCCGAAGGCGCCTCCGC
GATCACCGGCGCCGGCGATTTTCAGAGCCTGGCGACAAGATGAATACGGG
GCATTGATGATGCAGGTCAGACTTTTCTTTTCTAGCGTCGCCTCCCCTAC
ACCCTTCACTTCCTCGCATCATACGAACTCCTCTATGCGGCAGTTTCTTG
CACAGGAGACTCACTGCGCAATTCGGTTGGAGCCAAACCAAATCTTCCGG
TGGCGGAAGGAAGCAGTTCGACGAACTGCTTTGAGAATTTGAAGAAAAAG
CTTTGACCGAACGATCAGAAACAGTGCAAACCCGGGCGGTATTCACCTCT
CGAAATGAATGAGTCGCTCGTGCTGTCGCTGGCATGGCCAAGTCGAAGGA
CGACAGCAACTGCCACAGGTGAAGGATGTGCCGCGAGGCATGCTGCATAA
TATCAGAAGCGACACGTTACGGCGAAGGACACCGTTGCGAACACGCATCG
CTCTTGTTTAGCATTTACAAACAGTGAGCCAAGTCTCAATGACACACCCG
TCTGCGCCTGCGATTAAGGCCGTAGTACAAGATGACGCTGAGGCGTTGGT
GTGGATGCTCGAGCACAACCTCGTGGAGCTTGCGGCGACCGACGACCTCG
GAAATACGGCGGCACATCTTGCTGTTTTTCACGACTCCCCCAGGTAGGTT
TCGATGAGCGTTTCCCCCACCCACTCAGGCGAATTCACCTTGTCCCCCTC
GGAGGCCTGTGCCGAGAGGTCATCTACAGCGAGGTCGAGCCCTCCATCAC
TCCTGAATGAGAACACGGTATGGAGGATATGCACCATCAATCCAAGTGGT
TGGAGATACTCACTCGCGACGGCCCCTTCGCTGTTGTCGCACCTCTTCGC
TGCCCTCACTTGATTGCTTGCATCGAAACACCTTGACGAACAGCCCCCAT
GCCTCCTCATGTTGTTTCTCCTCTCCAGTAGTTCTTCGGAGATAAAACCG
TTTAAGCCAAAAAGAAGCAGAGCCCATTATCTCAGCTAAAGTGCCAGGGG
CCCGCGAACCCGATTCCATCCACCAAAAAGATCCAACACTCTCGTAATAA
TGCCTCGTCAGTTCATGTGTGCTTGCGGCGACGGTGAACGACCCAGTTTC
TTCTCGCTACGGTGTGCTAAATACGCCACGCCGAAGCGGCTCTTACCGCC
TACACGGACAGGAACATTTCCAACTTACGCCAATCCTCCCCGCCTCGCTG
GCTCTTTTTGTCTCGTCGGGGTGTGTCTTGTTGCACGATCCGCCTCCTTT
CCCACACCCCCTACACGCATAGGGTGTTGCGCTTGCTGCACCAACTGGGC
TTGGACCTTTCCGCAACGTGCGACGCTAACGGGTTCGGTTCGGCGATCTT
CTACTCCGTCTACCTTGGTCGGGTGGAATGCCTCGAGGTAGAACCCCTTC
CGTCGGGACGAGGTACACGCTTGTACGCAAACGAAGGACGTTTCCCTCGT
TGAGCGGTGAATGCCTCATTTTTTTCCTCCTCAGCGTGGCGGATCGAGGA
AAATGTCGGCCCTTCTCCCCTGCACTACCCCCCCGTCCTAGTTTTCCCTT
TTCTTCTCCTTCTATTCCTCAAGTACTTTGCCACCTTCGTTCGGTGAACA
CGCCCCTCAGAAGATCAACACAAAGGCTTCTTCGTAAGTGCACGGTATCT
GCACTTGCTTTTTGTCCTCGTCTGTATGGTGACCACTGCTTACGGCGTCC
GATTGGTTTTCCGTTCAACTACAGGACCTACTCCCCCCCTTGCTTCCTCC
CTTTCGGAATTCGCATGATTTGATTGGCACAGGAGCTCATAGCGCTCGGG
TACGACGTGTCTCTCCCCTGCGACGGCTTCGGTCGCCCCCCTGAGATCGT
AGCGAAACGGCACGACCAAGGGGCGGCGCTCGACCTGGTTCGACGAAGCC
TGGCGTGCCTCAAACTCCAGCGGCTGACTCGGGGTTTCCTGGGGCGCCAG
AAGGCGAAGCACATAAAGGCTGCGTGGGGGCGGGCGGCAAAGAAAGAGGT
CGATGCGGTGGAGAGCACACTCAGCGGCGGCGATGCCATCGCTGCTGCTA
TTGCTGATGGTAGTGGAATCATTGTTGAAAATGGTGGGAGTGATGGTGGG
GGGGGTGGTGATGGTGGTGTCGAGGGGCAAGCCGAAGCAGTCGGCAACAG
CGTCGACTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:5054726..5056985+

>mRNA_P-fluviatile_contig1.450.1 ID=mRNA_P-fluviatile_contig1.450.1|Name=mRNA_P-fluviatile_contig1.450.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1392bp|location=Sequence derived from alignment at P-fluviatile_contig1:5054726..5056985+ (Porterinema fluviatile SAG_2381)
ATGGCGCAGGGGGATGAGCGAAATGACGACGGCAGCGACGAGGGCGGGCG
AGAGGAAGTTGCGACCCAGCTGCGGCATTACCAGCCGAAGGCGCCTCCGC
GATCACCGGCGCCGGCGATTTTCAGAGCCTGGCGACAAGATGAATACGGG
GCATTGATGATGCAGATGGCGCAGGGGGATGAGCGAAATGACGACGGCAG
CGACGAGGGCGGGCGAGAGGAAGTTGCGACCCAGCTGCGGCATTACCAGC
CGAAGGCGCCTCCGCGATCACCGGCGCCGGCGATTTTCAGAGCCTGGCGA
CAAGATGAATACGGGGCATTGATGATGCAGGCCGTAGTACAAGATGACGC
TGAGGCGTTGGTGTGGATGCTCGAGCACAACCTCGTGGAGCTTGCGGCGA
CCGACGACCTCGGAAATACGGCGGCACATCTTGCTGTTTTTCACGACTCC
CCCAGGCCGTAGTACAAGATGACGCTGAGGCGTTGGTGTGGATGCTCGAG
CACAACCTCGTGGAGCTTGCGGCGACCGACGACCTCGGAAATACGGCGGC
ACATCTTGCTGTTTTTCACGACTCCCCCAGCCCTCCATCACTCCTGAATG
AGAACACGCCCTCCATCACTCCTGAATGAGAACACGGAGCTCATAGCGCT
CGGGTACGACGTGTCTCTCCCCTGCGACGGCTTCGGTCGCCCCCCTGAGA
TCGTAGCGAAACGGCACGACCAAGGGGCGGCGCTCGACCTGGTTCGACGA
AGCCTGGCGTGCCTCAAACTCCAGCGGCTGACTCGGGGTTTCCTGGGGCG
CCAGAAGGCGAAGCACATAAAGGCTGCGTGGGGGCGGGCGGCAAAGAAAG
AGGTCGATGCGGTGGAGAGCACACTCAGCGGCGGCGATGCCATCGCTGCT
GCTATTGCTGATGGTAGTGGAATCATTGTTGAAAATGGTGGGAGTGATGG
TGGGGGGGGTGGTGATGGTGGTGTCGAGGGGCAAGCCGAAGCAGTCGGCA
ACAGCGTCGACTGAGAGCTCATAGCGCTCGGGTACGACGTGTCTCTCCCC
TGCGACGGCTTCGGTCGCCCCCCTGAGATCGTAGCGAAACGGCACGACCA
AGGGGCGGCGCTCGACCTGGTTCGACGAAGCCTGGCGTGCCTCAAACTCC
AGCGGCTGACTCGGGGTTTCCTGGGGCGCCAGAAGGCGAAGCACATAAAG
GCTGCGTGGGGGCGGGCGGCAAAGAAAGAGGTCGATGCGGTGGAGAGCAC
ACTCAGCGGCGGCGATGCCATCGCTGCTGCTATTGCTGATGGTAGTGGAA
TCATTGTTGAAAATGGTGGGAGTGATGGTGGGGGGGGTGGTGATGGTGGT
GTCGAGGGGCAAGCCGAAGCAGTCGGCAACAGCGTCGACTGA
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