mRNA_P-fluviatile_contig22.4803.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4803.1
Unique NamemRNA_P-fluviatile_contig22.4803.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5L715_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L715_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.230e-22
Identity = 63/109 (57.80%), Postives = 68/109 (62.39%), Query Frame = 2
Query:   20 RVGSISRADSGVNPHVSVKSFLYAGAASFGSIGVGSGASGSQSFVLXXXXXXXXXXSSIPPDPTPSSKWWDSVASGNTLIPGAGISDAGEQLGGDPFKVPKAPVVGGTD 346
            RVGS    DSG+ P VS       GAA+FGSIG+GSGA GSQSF               PP   PSS+WW   ASGNTLIPGAGISD GE+LG  PFKV KAPV  GTD
Sbjct:  113 RVGSSGLLDSGLTPDVSTVHRSSVGAANFGSIGIGSGAPGSQSF--------------FPPPSAPSSEWWGHAASGNTLIPGAGISDTGEKLGRSPFKVFKAPVFEGTD 207          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.490e-20
Identity = 67/113 (59.29%), Postives = 83/113 (73.45%), Query Frame = 2
Query:    8 VSSMRVGSISRADSGVNPHVSVKSFLYAGAASFGSIGVGSGASGSQSFVLXXXXXXXXXXSSIPPDPTPSSKWWDSVASGNTLIPGAGISDAGEQLGGDPFKVPKAPVVGGTD 346
            +SS+ VGS S A++G+N H +  +   AG  SFGS+G+GS A GSQSF+  XXXXXXXXX    P PT SS+WW++VASG TLIPGAGI++ GE LG  P KVPKAPV  G+D
Sbjct:    1 MSSVGVGS-SVANTGLNSHDTAVNRSSAGVTSFGSVGMGSRALGSQSFIPGXXXXXXXXXXXXXPAPTASSRWWENVASGTTLIPGAGITEPGENLGRSPLKVPKAPVFDGSD 112          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5KW19_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW19_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.900e-17
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   47 SGVNPHVSVKSFLYAGAASFGSIGVGSGAS-GSQSFVLXXXXXXXXXXSSIPPDPTPSSKWWDSVASGNTLIPGAGISDAGEQ 292
            SG+NP V   +   AGAASFGSIG+GSGA+ G  SFV           SS+PP PTPSS+WW+SVASGNTLIPGAG +DAGE+
Sbjct:  104 SGLNPDVFAVNRSSAGAASFGSIGIGSGAAVGQSSFVSGTVGGAFRSQSSVPPAPTPSSRWWESVASGNTLIPGAG-TDAGEK 185          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.220e-17
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCEV 786
            D++R+++ L +KD C+EDW ADTG AFHMT SLSCMKDVKPC K V  IGGVTCEV
Sbjct:  289 DSIREHSTLTKKDRCIEDWYADTGTAFHMTDSLSCMKDVKPCHKKVKGIGGVTCEV 344          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.970e-17
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCE 783
            D++R+++ L +KD C+EDW ADTG AFHMT SLSCMKDVKPC K V  IGGVTCE
Sbjct:  272 DSIREHSTLTKKDRCIEDWYADTGTAFHMTDSLSCMKDVKPCHKKVKGIGGVTCE 326          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 7.100e-17
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCE 783
            D++R+++ L +KD C+EDW ADTG AFHMT SLSCMKDVKPC K V  IGGVTCE
Sbjct:  289 DSIREHSTLTKKDRCIEDWYADTGTAFHMTDSLSCMKDVKPCHKKVKGIGGVTCE 343          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5KAX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.290e-16
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:  619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCEV 786
            D++ +++ L +KD C+EDW ADTG AFHMT SLSCMKDVKPC K V  IGGVTCEV
Sbjct:  362 DSIHEHSTLKKKDRCIEDWYADTGTAFHMTDSLSCMKDVKPCHKKVKGIGGVTCEV 417          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5JNA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.450e-15
Identity = 45/85 (52.94%), Postives = 49/85 (57.65%), Query Frame = -3
Query:   19 MPAPGISVFPLATLSHHLLDGVGSGGMEDWLPKAPFPVPRTKXXXXXXXXXXPIEPKLAAPAYRNDFTDT*GFTPESARLILPTR 273
            MPAPGISVFPLA   HH LDG   GGM+DWLP AP P+P              IEPK A P+      DT GF PE  R +LPTR
Sbjct:    1 MPAPGISVFPLAACPHHSLDGADGGGMKDWLPGAPLPIP--------------IEPKFATPSEERFAVDTSGFKPEPKRPLLPTR 71          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5KTY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.930e-15
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 1
Query:  613 SDDAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCEV 786
            SDD + K    V K   VEDW ADTG AFHMT SLSCMKD+KPC K+VN IGGV+CEV
Sbjct:   96 SDDMILK---AVNKSRYVEDWYADTGTAFHMTDSLSCMKDLKPCHKSVNGIGGVSCEV 150          
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 7.020e-15
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  619 DAVRKNAPLVRKDECVEDWNADTGPAFHMTGSLSCMKDVKPCDKNVNEIGGVTCEV 786
            D++R+++ L +KD C+EDW ADTG AF+MT SLSCMKDV PC   V  IGGVTCEV
Sbjct:  234 DSLREHSTLTKKDRCIEDWYADTGTAFNMTDSLSCMKDVNPCHNKVKGIGGVTCEV 289          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5L715_9PHAE2.230e-2257.80CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2M6_9PHAE6.490e-2059.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW19_9PHAE1.900e-1761.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K622_9PHAE2.220e-1769.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LDZ0_9PHAE6.970e-1769.09CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KHE8_9PHAE7.100e-1769.09CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAX9_9PHAE1.290e-1667.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNA7_9PHAE1.450e-1552.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTY9_9PHAE5.930e-1567.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE7.020e-1564.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:848981..849768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size788
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4803.1prot_P-fluviatile_contig22.4803.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 848997..849371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815971.9725325-UTR-P-fluviatile_contig22:848980..8489961622815971.9725325-UTR-P-fluviatile_contig22:848980..848996Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 848981..848996 +
1693563908.564308-UTR-P-fluviatile_contig22:848980..8489961693563908.564308-UTR-P-fluviatile_contig22:848980..848996Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 848981..848996 +
1622815971.9959779-UTR-P-fluviatile_contig22:849371..8497681622815971.9959779-UTR-P-fluviatile_contig22:849371..849768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 849372..849768 +
1693563908.5868669-UTR-P-fluviatile_contig22:849371..8497681693563908.5868669-UTR-P-fluviatile_contig22:849371..849768Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 849372..849768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815971.9850342-CDS-P-fluviatile_contig22:848996..8493711622815971.9850342-CDS-P-fluviatile_contig22:848996..849371Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 848997..849371 +
1693563908.5746934-CDS-P-fluviatile_contig22:848996..8493711693563908.5746934-CDS-P-fluviatile_contig22:848996..849371Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 848997..849371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4803.1

>prot_P-fluviatile_contig22.4803.1 ID=prot_P-fluviatile_contig22.4803.1|Name=mRNA_P-fluviatile_contig22.4803.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=125bp
MRVGSISRADSGVNPHVSVKSFLYAGAASFGSIGVGSGASGSQSFVLGTG
NGALGSQSSIPPDPTPSSKWWDSVASGNTLIPGAGISDAGEQLGGDPFKV
PKAPVVGGTDRTCCIPYHGHKIFC*
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mRNA from alignment at P-fluviatile_contig22:848981..849768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4803.1 ID=mRNA_P-fluviatile_contig22.4803.1|Name=mRNA_P-fluviatile_contig22.4803.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=788bp|location=Sequence derived from alignment at P-fluviatile_contig22:848981..849768+ (Porterinema fluviatile SAG_2381)
CTTAGGCGTGTCCAGCATGCGGGTTGGGAGTATTAGTCGTGCAGACTCAG GCGTGAACCCTCATGTATCTGTAAAATCGTTCCTATATGCTGGGGCTGCA AGCTTTGGTTCGATTGGAGTTGGAAGTGGGGCTTCAGGTAGCCAGTCTTT CGTTCTGGGAACTGGGAATGGGGCTTTAGGTAGCCAGTCTTCCATTCCGC CCGACCCTACTCCGTCGAGTAAGTGGTGGGATAGTGTCGCCAGTGGAAAC ACACTGATTCCTGGGGCCGGCATTTCTGACGCAGGAGAACAATTGGGTGG GGATCCTTTCAAAGTTCCCAAAGCTCCTGTTGTTGGCGGGACGGACCGTA CGTGTTGTATCCCTTATCATGGCCACAAAATTTTCTGCTGAGCGCCTGCC ATACTTTTCTGTATGAGGCGTTTGTTTCTACGATTGACATTCCGATTTCT GATATTGGGTTCCATTTGACCCCCTTGCTTGCTATACACAGGATGAAAAC GGTGTGAGGTCTGACGACTTGGTGTTGCTCTCACAGTACCTTGAAAAACT CGTGTGATCTGACGTGTCTTGTGGCATTGTACGATGCTATGCTGCAGGAA TGCTTTTTGTTCAGTGATGATGCTGTCCGTAAGAACGCTCCTCTCGTTAG GAAAGATGAGTGTGTCGAAGATTGGAATGCCGATACGGGTCCTGCTTTCC ACATGACAGGTTCTCTCTCTTGCATGAAGGACGTGAAGCCTTGCGACAAG AACGTAAATGAGATTGGTGGCGTGACTTGTGAGGTGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:848981..849768+

>mRNA_P-fluviatile_contig22.4803.1 ID=mRNA_P-fluviatile_contig22.4803.1|Name=mRNA_P-fluviatile_contig22.4803.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=750bp|location=Sequence derived from alignment at P-fluviatile_contig22:848981..849768+ (Porterinema fluviatile SAG_2381)
ATGCGGGTTGGGAGTATTAGTCGTGCAGACTCAGGCGTGAACCCTCATGT
ATCTGTAAAATCGTTCCTATATGCTGGGGCTGCAAGCTTTGGTTCGATTG
GAGTTGGAAGTGGGGCTTCAGGTAGCCAGTCTTTCGTTCTGGGAACTGGG
AATGGGGCTTTAGGTAGCCAGTCTTCCATTCCGCCCGACCCTACTCCGTC
GAGTAAGTGGTGGGATAGTGTCGCCAGTGGAAACACACTGATTCCTGGGG
CCGGCATTTCTGACGCAGGAGAACAATTGGGTGGGGATCCTTTCAAAGTT
CCCAAAGCTCCTGTTGTTGGCGGGACGGACCGTACGTGTTGTATCCCTTA
TCATGGCCACAAAATTTTCTGCTGAATGCGGGTTGGGAGTATTAGTCGTG
CAGACTCAGGCGTGAACCCTCATGTATCTGTAAAATCGTTCCTATATGCT
GGGGCTGCAAGCTTTGGTTCGATTGGAGTTGGAAGTGGGGCTTCAGGTAG
CCAGTCTTTCGTTCTGGGAACTGGGAATGGGGCTTTAGGTAGCCAGTCTT
CCATTCCGCCCGACCCTACTCCGTCGAGTAAGTGGTGGGATAGTGTCGCC
AGTGGAAACACACTGATTCCTGGGGCCGGCATTTCTGACGCAGGAGAACA
ATTGGGTGGGGATCCTTTCAAAGTTCCCAAAGCTCCTGTTGTTGGCGGGA
CGGACCGTACGTGTTGTATCCCTTATCATGGCCACAAAATTTTCTGCTGA
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