prot_P-fluviatile_contig21.4529.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig21.4529.1
Unique Nameprot_P-fluviatile_contig21.4529.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length313
Homology
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: D7G4R0_ECTSI (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R0_ECTSI)

HSP 1 Score: 504 bits (1299), Expect = 2.390e-178
Identity = 242/301 (80.40%), Postives = 268/301 (89.04%), Query Frame = 0
Query:    3 AELDVIFQDDDILVCNKPAGLRTVPGKATGKEGESKAQVEWHSGTKRQRQEFWTDIVHNSCQALLQSEETEGDEEFRGHLRRLTRENNIPRKRRRRIKFQNYTAVTLGLEGEKLQSVSNRLWEAVDGHLKKEVGPGVDCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPHVR 303
            +++DVIF D DI+V NKP GLRTVPGKA G E E++  VEWHSGTKRQRQEFWTD+VH +C++LL  E+TEG+EEFR HLRRLT+ENN+PRKR    KF NYTAVTLGLEGE+   VS RLW+ VDGHLKKEVGPGVDCLLTR++SRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTY AVLEG MAKTPKSGE+TAKLR D +NRPKQMFC+E GNEA T WERI+RK+DRTWVDFTPVTGRTHQIRMHAVHLGHPV+GDSLYGT +G AKS+RLLLHARRISFPH R
Sbjct:   22 SDVDVIFSDPDIVVLNKPTGLRTVPGKAVGPEAETRVHVEWHSGTKRQRQEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTKENNVPRKR---SKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERIKRKEDRTWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYGTPEGTAKSERLLLHARRISFPHPR 319          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: A0A2E2KKK0_9GAMM (RNA pseudouridine synthase n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E2KKK0_9GAMM)

HSP 1 Score: 158 bits (399), Expect = 8.040e-44
Identity = 78/162 (48.15%), Postives = 105/162 (64.81%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            DCL  R+++ +P AR VHRLD  TSGL+V+ALT+EA R++ R F+ER   K Y+A++ G  ++  K G +   L  D  NRP Q+   E G  A T W+        T V+ TP+TGR+HQ+R+H   +GHP+IGD  Y  +D KA SDRLLLHA R+SFPH
Sbjct:   32 DCLWRRVQAEFPTARVVHRLDYATSGLMVLALTLEAQRDISRSFQERKTGKLYQAIISGKPSE--KQGSVDLPLICDWENRPLQIVDHEHGKNALTHWKATGEDSRGTRVELTPITGRSHQLRVHMQAMGHPIIGDRFYADEDSKALSDRLLLHAERLSFPH 191          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: A0A8A4TYK2_9BACT (Pseudouridine synthase n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TYK2_9BACT)

HSP 1 Score: 155 bits (393), Expect = 9.240e-43
Identity = 77/162 (47.53%), Postives = 103/162 (63.58%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            D L +R +   PEAR VHRLD +TSG+ VMAL  ++ RE+ RQF +R   KTY A+  G M    + GE+   L  D  NRP+QM   E+G +A+T W  I R+ DRTWV  TP+TGR+HQ+R+H   +GHP++GD LY   +    + RLLLHA  +SF H
Sbjct:   45 DSLASRAQQLEPEARTVHRLDCETSGVTVMALDADSHRELSRQFHDREVLKTYVAICAGMME--TEQGEVNLPLVCDWPNRPRQMVDHENGKQAQTFWRVIHREPDRTWVQLTPITGRSHQLRVHLREIGHPILGDRLYAPPEVMRMAPRLLLHAEMLSFSH 204          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: A0A1Q8FZ42_9PROT (Pseudouridine synthase n=2 Tax=Maricaulis TaxID=74317 RepID=A0A1Q8FZ42_9PROT)

HSP 1 Score: 155 bits (393), Expect = 1.040e-42
Identity = 77/162 (47.53%), Postives = 103/162 (63.58%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            DCL  R ++ +P AR +HRLD DTSG++V+ALT  A   + +QF +R  SK+Y A ++G M  T  SG +   L  D  NRP+QM C E G  A T WE +   D  + V   P+TGR+HQ+R+H +HLGHP++GD+LY   D  A SDRL LHAR + F H
Sbjct:   49 DCLEARARADFPTARIIHRLDMDTSGVIVLALTAHAQAHIGKQFEKRQTSKSYIARVQGEM--TQSSGRVDQPLITDWPNRPRQMICHERGRRAVTDWEVLDIADGVSRVRLAPLTGRSHQLRVHMLHLGHPILGDNLYAPPDALAASDRLCLHARELGFRH 208          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: UPI000833CE2D (pseudouridine synthase n=1 Tax=Neptuniibacter marinus TaxID=1806670 RepID=UPI000833CE2D)

HSP 1 Score: 154 bits (389), Expect = 2.650e-42
Identity = 76/164 (46.34%), Postives = 109/164 (66.46%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDR--TWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            DCL  R+++ +P AR VHRLD  TSG++V+ALT+EA R + R F+ER   K Y+A++ GT  ++   G +   LR D  NRP Q+   E G  A T W+ + ++     T V+ TP+TGR+HQ+R+H   +GHP++GD  Y   +G+AKSDRLLLHA ++SFPH
Sbjct:   32 DCLWRRVQTIFPTARVVHRLDYATSGVMVLALTLEAQRSLNRSFQERQTHKRYQAIISGTPEQS--EGSVELPLRCDWENRPLQIVDFEQGKNALTHWKVLAKESSEQDTRVELTPITGRSHQLRVHMQAMGHPILGDRFYADTEGQAKSDRLLLHAEQLSFPH 193          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: A0A136HHU2_9GAMM (RNA pseudouridine synthase n=2 Tax=Neptuniibacter TaxID=459520 RepID=A0A136HHU2_9GAMM)

HSP 1 Score: 154 bits (388), Expect = 4.070e-42
Identity = 77/167 (46.11%), Postives = 109/167 (65.27%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLW-----ERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            DCL  R+++++P AR VHRLD  TSG++V+ALT++A R + R F+ER   K Y+A++ GT   T   G +   LR D  NRP Q+   E G  A T W     ER  +  + T V+ TP+TGR+HQ+R+H   +GHP++GD  Y T +G A+SDRLLLHA +++FPH
Sbjct:   32 DCLWRRVQTQFPTARVVHRLDYATSGVMVLALTLDAQRALNRSFQERKTHKRYQAIIAGTP--TESDGSVELPLRCDWENRPLQIVDFEQGKSALTHWKVLATERAAQGIENTRVELTPITGRSHQLRVHMQAMGHPILGDRFYATPEGVAQSDRLLLHAEQLAFPH 196          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: UPI00040D62A6 (bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA n=1 Tax=Ferrimonas futtsuensis TaxID=364764 RepID=UPI00040D62A6)

HSP 1 Score: 154 bits (388), Expect = 4.990e-42
Identity = 78/162 (48.15%), Postives = 103/162 (63.58%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            D    R+ S+ P+A+ VHRLD DTSG++V AL  EA RE+ RQFR+R  SKTY A + GT    P  GE+   L  D  NRPKQM C   G  ++TL++ I + DD   V+ TP+TGR+HQ+R+H + LGHP+ GD  Y   D   K+DRL LHA R++  H
Sbjct:   44 DSSYARVLSQHPQAQVVHRLDMDTSGVMVFALNKEAERELKRQFRDRETSKTYHARVWGT---PPTQGEVDLPLICDWPNRPKQMVCHLQGKPSQTLYKVINQSDDSALVELTPITGRSHQLRVHMLALGHPICGDRFYAEGDALNKADRLQLHASRLTINH 202          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: A0A0J8YVV8_9GAMM (23S rRNA pseudouridylate synthase n=15 Tax=Enterobacterales TaxID=91347 RepID=A0A0J8YVV8_9GAMM)

HSP 1 Score: 153 bits (387), Expect = 6.640e-42
Identity = 77/162 (47.53%), Postives = 104/162 (64.20%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            D ++TRI+  +P A  VHRLD  TSG++V+ALT  A RE+ RQFRER PSKTY A + G +   P  G +   L  D  NRPKQ  C E+G  A+T WE + R D    V   P+TGR+HQ+R+H + +GHP++GD  Y + + KA + RLLLHA R++  H
Sbjct:   42 DSIMTRIQRDFPSAESVHRLDMSTSGVMVVALTKAAERELKRQFREREPSKTYIAQVWGQLV--PDEGLVDLPLICDWPNRPKQKVCFETGKAAQTEWEVLARDDVSCRVQLKPITGRSHQLRVHMLAMGHPILGDYFYASPEAKALASRLLLHAERLTITH 201          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: A0A4V2SBM6_9GAMM (Ribosomal large subunit pseudouridine synthase A n=1 Tax=Chromatocurvus halotolerans TaxID=1132028 RepID=A0A4V2SBM6_9GAMM)

HSP 1 Score: 153 bits (387), Expect = 7.240e-42
Identity = 75/162 (46.30%), Postives = 107/162 (66.05%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            DCL+TR+++ +P AR VHRLD DTSG++++AL+ ++   + R F+ER   K Y AV+ G +  T  SGEI   +  D  NRP+Q  C+ +G  A TL+   +R+DDRT +   PVTGR+HQ+R+H   LGHP++G  +Y      A + RLLLHA RI+FPH
Sbjct:   45 DCLITRLQADYPSARTVHRLDLDTSGIMIIALSAQSQSVLGRLFQERRVCKEYEAVVYGQV--TADSGEIDLPIARDWENRPRQKICRRTGRHALTLYTVTERRDDRTRLLLEPVTGRSHQLRIHMASLGHPILGCDMYAHPQALAMASRLLLHASRIAFPH 204          
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Match: UPI0019D3727C (pseudouridine synthase n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3727C)

HSP 1 Score: 153 bits (387), Expect = 7.670e-42
Identity = 73/162 (45.06%), Postives = 109/162 (67.28%), Query Frame = 0
Query:  140 DCLLTRIKSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTMAKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVDFTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFPH 301
            DCL+TR++  +P A  VHRLD DTSG++++ LT E    + RQF++R   KTY AV+ G  A+   SGEI   +  D +NRP+Q+ C E G +A T ++ ++R+ DR+ ++ +PVTGR+HQ+R+H   LGHP++G  +Y   +  A +DRL+LHA RI F H
Sbjct:   47 DCLITRLQRDYPSASIVHRLDLDTSGIMIIPLTRECHAHISRQFQQRRVEKTYTAVVWGEPARD--SGEIDLPIACDWDNRPRQLICHERGKQALTRYQVLERRGDRSRLELSPVTGRSHQLRIHMRELGHPILGCDMYAHPEALAMADRLMLHATRIGFEH 206          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4529.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R0_ECTSI2.390e-17880.40Ribosomal large subunit pseudouridine synthase A n... [more]
A0A2E2KKK0_9GAMM8.040e-4448.15RNA pseudouridine synthase n=1 Tax=Oceanospirillac... [more]
A0A8A4TYK2_9BACT9.240e-4347.53Pseudouridine synthase n=1 Tax=Sulfidibacter coral... [more]
A0A1Q8FZ42_9PROT1.040e-4247.53Pseudouridine synthase n=2 Tax=Maricaulis TaxID=74... [more]
UPI000833CE2D2.650e-4246.34pseudouridine synthase n=1 Tax=Neptuniibacter mari... [more]
A0A136HHU2_9GAMM4.070e-4246.11RNA pseudouridine synthase n=2 Tax=Neptuniibacter ... [more]
UPI00040D62A64.990e-4248.15bifunctional tRNA pseudouridine(32) synthase/23S r... [more]
A0A0J8YVV8_9GAMM6.640e-4247.5323S rRNA pseudouridylate synthase n=15 Tax=Enterob... [more]
A0A4V2SBM6_9GAMM7.240e-4246.30Ribosomal large subunit pseudouridine synthase A n... [more]
UPI0019D3727C7.670e-4245.06pseudouridine synthase n=1 Tax=Parahaliea mediterr... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 152..265
e-value: 1.8E-23
score: 83.4
NoneNo IPR availableGENE3D3.30.2350.10coord: 122..310
e-value: 3.4E-52
score: 179.1
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 4..34
NoneNo IPR availablePANTHERPTHR21600:SF43RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Acoord: 140..307
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 140..307
coord: 4..34
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 156..170
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 3..31
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 139..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:626248..630665 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4529.1mRNA_P-fluviatile_contig21.4529.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig21 626248..630665 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig21.4529.1 ID=prot_P-fluviatile_contig21.4529.1|Name=mRNA_P-fluviatile_contig21.4529.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=313bp
MPAELDVIFQDDDILVCNKPAGLRTVPGKATGKEGESKAQVEWHSGTKRQ
RQEFWTDIVHNSCQALLQSEETEGDEEFRGHLRRLTRENNIPRKRRRRIK
FQNYTAVTLGLEGEKLQSVSNRLWEAVDGHLKKEVGPGVDCLLTRIKSRW
PEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYRAVLEGTM
AKTPKSGEITAKLRADVNNRPKQMFCQESGNEAKTLWERIQRKDDRTWVD
FTPVTGRTHQIRMHAVHLGHPVIGDSLYGTDDGKAKSDRLLLHARRISFP
HVRVEAQHTTLV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf