mRNA_P-fluviatile_contig21.4476.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4476.1
Unique NamemRNA_P-fluviatile_contig21.4476.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:250391..251680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1290
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4476.1prot_P-fluviatile_contig21.4476.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 250500..251297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815925.275782-UTR-P-fluviatile_contig21:250390..2504991622815925.275782-UTR-P-fluviatile_contig21:250390..250499Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 250391..250499 +
1693563752.3508112-UTR-P-fluviatile_contig21:250390..2504991693563752.3508112-UTR-P-fluviatile_contig21:250390..250499Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 250391..250499 +
1622815925.2976143-UTR-P-fluviatile_contig21:251297..2516801622815925.2976143-UTR-P-fluviatile_contig21:251297..251680Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 251298..251680 +
1693563752.3691797-UTR-P-fluviatile_contig21:251297..2516801693563752.3691797-UTR-P-fluviatile_contig21:251297..251680Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 251298..251680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815925.2870939-CDS-P-fluviatile_contig21:250499..2512971622815925.2870939-CDS-P-fluviatile_contig21:250499..251297Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 250500..251297 +
1693563752.3584697-CDS-P-fluviatile_contig21:250499..2512971693563752.3584697-CDS-P-fluviatile_contig21:250499..251297Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 250500..251297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4476.1

>prot_P-fluviatile_contig21.4476.1 ID=prot_P-fluviatile_contig21.4476.1|Name=mRNA_P-fluviatile_contig21.4476.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=266bp
MTRSVARRREQTRPALQASAGAPPDEAAETEEAAAAAQQPVNVMTRSVAR
GREQPVIHEPAAAGEIEEAAAAAQKAGHTGPGCSWRDRGSRNGGGATAGH
PRAGGSDRDRGSSGRGAGAGHTGPGCSWRDRGSSGRGAAAGHTRAGGSGG
DRGSGGSGASDAAACHARAGGSGGDRGSGGSGASGAAAGHTRAGGSSGPG
AAAGHARAWGSGRDRRSRNGGGHAGIGGTGTGDRGWGSTGTGARGRGSKG
GRGGGGGSTGGCTGR*
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mRNA from alignment at P-fluviatile_contig21:250391..251680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4476.1 ID=mRNA_P-fluviatile_contig21.4476.1|Name=mRNA_P-fluviatile_contig21.4476.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1290bp|location=Sequence derived from alignment at P-fluviatile_contig21:250391..251680+ (Porterinema fluviatile SAG_2381)
AGCTCCAGCGGCAAAGGCAAAGGCAAATGCGAAGGCGAGGGCGAAGCGGA
GGATCGCGGCAAAGGCAAAGGGGAAGGGGAAGGGGAAGGCGAGGGCGAGG
GCTAAGGTGATGACACGTTCGGTGGCGCGGAGGCGTGAGCAGACGCGGCC
GGCCCTTCAGGCATCGGCGGGAGCGCCACCGGATGAAGCTGCAGAGACCG
AGGAAGCAGCGGCCGCGGCGCAGCAGCCTGTCAATGTGATGACACGTTCG
GTGGCGCGGGGGCGGGAGCAGCCGGTCATCCACGAGCCGGCTGCAGCTGG
AGAGATCGAGGAAGCAGCGGCCGCGGCGCAAAAAGCCGGTCACACAGGAC
CCGGCTGCAGCTGGAGAGACCGAGGAAGCAGAAACGGCGGCGGCGCTACA
GCCGGTCATCCACGAGCCGGAGGCAGTGACAGAGACCGGGGAAGCAGCGG
CCGGGGCGCAGGAGCCGGTCACACAGGACCCGGCTGCAGCTGGAGAGACC
GAGGAAGCAGCGGCCGCGGCGCAGCAGCCGGTCATACACGAGCCGGAGGC
AGCGGCGGAGACCGAGGTAGCGGGGGCAGCGGTGCCAGCGACGCAGCAGC
CTGTCATGCACGAGCCGGAGGCAGCGGCGGAGACCGAGGTAGCGGGGGCA
GCGGTGCCAGCGGCGCAGCAGCCGGTCATACACGAGCCGGAGGCAGCAGC
GGCCCCGGCGCAGCAGCCGGTCATGCACGAGCCTGGGGTAGCGGCAGAGA
CCGACGCAGCAGAAACGGCGGCGGCCACGCAGGCATCGGCGGCACCGGCA
CCGGCGACAGAGGTTGGGGTAGCACCGGCACCGGTGCCAGAGGTCGAGGC
AGCAAAGGGGGCCGCGGTGGCGGCGGGGGCAGCACCGGAGGGTGCACCGG
ACGCTGATGAAGAGGATTGGGCCCTCGCCGGGCTAGTGCTAGAAGAAAAC
CTTGCCGCAGAGCCGGTGGTGTGGACCGATGCCGAATTGTCAAAGCTAAT
GGACGAGCACAGGGCGGCATTTGTAGAAATAATCAAGGACTTGGTCCACG
GTGCTGACAGCATCAGCCTTGGCGACATGAAGTTGGAGATGCAATTGCAC
CAGGCTTACCCGAAAGCGGTGGTTGGTTGTGATTCGTCACTTGTAGTGAG
GCACATTATCGCCAAGGAGTCAATGGGTATTCTTCACGTTGCACGTGTTT
ACTTCAAGGACGGCGGATTTTTTGCTTTTGTCTAAATAATGGGCTTGAAT
TGAATTGAATTGAATTGAATTGACTCTGAAGTCTCGAGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:250391..251680+

>mRNA_P-fluviatile_contig21.4476.1 ID=mRNA_P-fluviatile_contig21.4476.1|Name=mRNA_P-fluviatile_contig21.4476.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1596bp|location=Sequence derived from alignment at P-fluviatile_contig21:250391..251680+ (Porterinema fluviatile SAG_2381)
ATGACACGTTCGGTGGCGCGGAGGCGTGAGCAGACGCGGCCGGCCCTTCA
GGCATCGGCGGGAGCGCCACCGGATGAAGCTGCAGAGACCGAGGAAGCAG
CGGCCGCGGCGCAGCAGCCTGTCAATGTGATGACACGTTCGGTGGCGCGG
GGGCGGGAGCAGCCGGTCATCCACGAGCCGGCTGCAGCTGGAGAGATCGA
GGAAGCAGCGGCCGCGGCGCAAAAAGCCGGTCACACAGGACCCGGCTGCA
GCTGGAGAGACCGAGGAAGCAGAAACGGCGGCGGCGCTACAGCCGGTCAT
CCACGAGCCGGAGGCAGTGACAGAGACCGGGGAAGCAGCGGCCGGGGCGC
AGGAGCCGGTCACACAGGACCCGGCTGCAGCTGGAGAGACCGAGGAAGCA
GCGGCCGCGGCGCAGCAGCCGGTCATACACGAGCCGGAGGCAGCGGCGGA
GACCGAGGTAGCGGGGGCAGCGGTGCCAGCGACGCAGCAGCCTGTCATGC
ACGAGCCGGAGGCAGCGGCGGAGACCGAGGTAGCGGGGGCAGCGGTGCCA
GCGGCGCAGCAGCCGGTCATACACGAGCCGGAGGCAGCAGCGGCCCCGGC
GCAGCAGCCGGTCATGCACGAGCCTGGGGTAGCGGCAGAGACCGACGCAG
CAGAAACGGCGGCGGCCACGCAGGCATCGGCGGCACCGGCACCGGCGACA
GAGGTTGGGGTAGCACCGGCACCGGTGCCAGAGGTCGAGGCAGCAAAGGG
GGCCGCGGTGGCGGCGGGGGCAGCACCGGAGGGTGCACCGGACGCTGAAT
GACACGTTCGGTGGCGCGGAGGCGTGAGCAGACGCGGCCGGCCCTTCAGG
CATCGGCGGGAGCGCCACCGGATGAAGCTGCAGAGACCGAGGAAGCAGCG
GCCGCGGCGCAGCAGCCTGTCAATGTGATGACACGTTCGGTGGCGCGGGG
GCGGGAGCAGCCGGTCATCCACGAGCCGGCTGCAGCTGGAGAGATCGAGG
AAGCAGCGGCCGCGGCGCAAAAAGCCGGTCACACAGGACCCGGCTGCAGC
TGGAGAGACCGAGGAAGCAGAAACGGCGGCGGCGCTACAGCCGGTCATCC
ACGAGCCGGAGGCAGTGACAGAGACCGGGGAAGCAGCGGCCGGGGCGCAG
GAGCCGGTCACACAGGACCCGGCTGCAGCTGGAGAGACCGAGGAAGCAGC
GGCCGCGGCGCAGCAGCCGGTCATACACGAGCCGGAGGCAGCGGCGGAGA
CCGAGGTAGCGGGGGCAGCGGTGCCAGCGACGCAGCAGCCTGTCATGCAC
GAGCCGGAGGCAGCGGCGGAGACCGAGGTAGCGGGGGCAGCGGTGCCAGC
GGCGCAGCAGCCGGTCATACACGAGCCGGAGGCAGCAGCGGCCCCGGCGC
AGCAGCCGGTCATGCACGAGCCTGGGGTAGCGGCAGAGACCGACGCAGCA
GAAACGGCGGCGGCCACGCAGGCATCGGCGGCACCGGCACCGGCGACAGA
GGTTGGGGTAGCACCGGCACCGGTGCCAGAGGTCGAGGCAGCAAAGGGGG
CCGCGGTGGCGGCGGGGGCAGCACCGGAGGGTGCACCGGACGCTGA
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