mRNA_P-fluviatile_contig21.4631.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4631.1
Unique NamemRNA_P-fluviatile_contig21.4631.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:1818593..1820356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815924.7830913-CDS-P-fluviatile_contig21:1818594..18187331622815924.7830913-CDS-P-fluviatile_contig21:1818594..1818733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1818595..1818733 -
1693563751.7761295-CDS-P-fluviatile_contig21:1818594..18187331693563751.7761295-CDS-P-fluviatile_contig21:1818594..1818733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1818595..1818733 -
1622815924.7951827-CDS-P-fluviatile_contig21:1820174..18203561622815924.7951827-CDS-P-fluviatile_contig21:1820174..1820356Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1820175..1820356 -
1693563751.787816-CDS-P-fluviatile_contig21:1820174..18203561693563751.787816-CDS-P-fluviatile_contig21:1820174..1820356Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1820175..1820356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4631.1prot_P-fluviatile_contig21.4631.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 1818595..1820356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4631.1

>prot_P-fluviatile_contig21.4631.1 ID=prot_P-fluviatile_contig21.4631.1|Name=mRNA_P-fluviatile_contig21.4631.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
AHCSWPAGGVAKVSSLLKVFLWRRALPLLLPSRRGPRADERSRRRKGLQL
TSVIFGAHTQRSCRRERRQCGRRTHSGPPRGRRRVPRRPWPTARVRVHPG
RQGAGAA
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mRNA from alignment at P-fluviatile_contig21:1818593..1820356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4631.1 ID=mRNA_P-fluviatile_contig21.4631.1|Name=mRNA_P-fluviatile_contig21.4631.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1764bp|location=Sequence derived from alignment at P-fluviatile_contig21:1818593..1820356- (Porterinema fluviatile SAG_2381)
GCTCACTGTAGTTGGCCAGCTGGAGGAGTGGCCAAGGTTTCCAGCCTTTT
AAAAGTCTTTCTGTGGCGCCGAGCCCTACCTTTGCTCCTGCCGAGCCGTC
GGGGTCCTCGGGCGGACGAGAGGAGCCGCCGTAGGAAAGGGCTCCAGCTA
ACCAGCGTAATCTTCGGAGCGCACACTCAGCGGTACGTGAGAGAACCACG
CATGTGTCGAGTCGAACTTCGTCGAGTACGGTAATTGCGTGGATGTGTAC
GCGCGCACGAGCCTAGATGGCGCCTACCAGTTGTGGGCAGCATGCACGGA
ACAACAGATGCGTGATCGCTTGGGGTGGTGTGCTATCCATATTCCCTTCC
ATAACTACGTCGCATGCAATAGTGCATGATCCTTCTCGCCCTTCGTGCGG
CCGGGTCGGGATATCCGTAGACGCCGTCCGTCATGTTGCCGGGAAAGCAA
CATCGCCGTAGTCATCGCTTCTTCTGTCCTTGGCAAAGCTCCGTTCTGTT
TTGCACAAACATCGGCCTACAGCAGTGATATGACATGCGTATGCATACAT
ACATCGAGAGCTGCCACCGACAACCCCTCTTCGCAAGGTCGTTGCCCGTG
GTAAATTACCCAACCACGAAAGGATGGTTTAACCTCAGCTGGTCCTGTGT
CTAGACGCCGGCGGCGTGGAGAGCTTCCTGTTACCGACAGCCTCTCTTCG
CCGAGGTCGTCGCCTTTGGTGCTCGGCCACGACCTTGGGGTAATTACATA
AACTATACATCTTTTCGAAAAAAAATCACTGGCCGTTTGCCTGTAACCGA
ACACTCTGTGTTTGGGGGTCGTACGCCGTGCGCTAGTGGGGTTACTGCTC
TAGAGGCGATTGCTGCTTTCGAGAATTTTCAATTTGTCGGTTCCAGTCAC
CTAACCAGTGTGATTGGCGACCGTGTCACGGAGCGGTGATGTGGTTGCCG
CTTTCGAGCGGGCACACATGGAATTTTCAATATGTCGGCTCCCATCACCA
AATCAATGTGGTGGGCGACCGTGGCACGGAAGAGGTGCTGCGGTTGCCGC
TTTCGAGCGGGCACACATAGAATTTTCAATATGTCGGCTCCCACCTCTTG
ACCAATGTGGTGGGCGACCGTGGCAGGGAGAGGTGCTGCGGTTGCTGCTT
TTGAGCGGGCACGCCTAAATTTTTCAACATGTCGGTTCCCATCTCCTAAT
CAATGTGGTTGGCGGCCGTGGGCACGGAAGAGGTGCTGCGGTTGCCGCTT
TCGAGCGGGCACACATATAAAATATATATCTTTCAATATGTCGGTACCAA
CCACCAGATCAATGTGACTGGCTGCCGTGGCACGTAGTACGGAGAGGTGC
TGCGGTTGCCGCCGTCGAGCGGGCACACATATAATTTCTGCAATGTCGGT
TTCGACCACTCGTCAATGTGGTTGGCGGCCGTTGAACGGAAACGTACTGT
GGTTGCTGTTTTGAGTGGGGCACACATTCACATTCAGTAGGGGATATCCC
GTGGCGTTCTCCCCGGTCTGCGGCGGCCTCACGCTTGTGACGCACGCAGA
CCCTCGTTTTGTTCCATCTAACGATGCTTCGTCGACCCCATGTTGGCCAT
TTCCGCTGCTCATGTTAATCCAGATCATGCAGACGAGAGCGTCGGCAGTG
CGGACGTCGCACGCACAGCGGACCACCGCGCGGACGACGTCGCGTACCGC
GGCGGCCGTGGCCAACAGCTCGGGTTCGAGTTCACCCCGGCCGCCAGGGC
GCGGGGGCGGCGCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:1818593..1820356-

>mRNA_P-fluviatile_contig21.4631.1 ID=mRNA_P-fluviatile_contig21.4631.1|Name=mRNA_P-fluviatile_contig21.4631.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig21:1818593..1820356- (Porterinema fluviatile SAG_2381)
GCTCACTGTAGTTGGCCAGCTGGAGGAGTGGCCAAGGTTTCCAGCCTTTT
AAAAGTCTTTCTGTGGCGCCGAGCCCTACCTTTGCTCCTGCCGAGCCGTC
GGGGTCCTCGGGCGGACGAGAGGAGCCGCCGTAGGAAAGGGCTCCAGCTA
ACCAGCGTAATCTTCGGAGCGCACACTCAGCGGCTCACTGTAGTTGGCCA
GCTGGAGGAGTGGCCAAGGTTTCCAGCCTTTTAAAAGTCTTTCTGTGGCG
CCGAGCCCTACCTTTGCTCCTGCCGAGCCGTCGGGGTCCTCGGGCGGACG
AGAGGAGCCGCCGTAGGAAAGGGCTCCAGCTAACCAGCGTAATCTTCGGA
GCGCACACTCAGCGATCATGCAGACGAGAGCGTCGGCAGTGCGGACGTCG
CACGCACAGCGGACCACCGCGCGGACGACGTCGCGTACCGCGGCGGCCGT
GGCCAACAGCTCGGGTTCGAGTTCACCCCGGCCGCCAGGGCGCGGGGGCG
GCGATCATGCAGACGAGAGCGTCGGCAGTGCGGACGTCGCACGCACAGCG
GACCACCGCGCGGACGACGTCGCGTACCGCGGCGGCCGTGGCCAACAGCT
CGGGTTCGAGTTCACCCCGGCCGCCAGGGCGCGGGGGCGGCG
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