mRNA_P-fluviatile_contig1.403.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.403.1
Unique NamemRNA_P-fluviatile_contig1.403.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.403.1 vs. uniprot
Match: D8LI36_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI36_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.260e-72
Identity = 127/169 (75.15%), Postives = 141/169 (83.43%), Query Frame = 1 
Query:  253 KRPKEQLNELPLTISAAVCKDNKASLLVHLRDETLNFAGDTGAVGRISVESKKKGRGLTFDLKGQQFRGQIVPSATVLVVAVGRTEAKVEGLFSEVCRLDYMGNVFDAMGGEVLKGEMDDSYKFEEEDVNARGG--GAHAEVDDDKGDAGKAAKPGRRKSLGKKRSSAS 753
            K+ KE+L+E+PL +  AVCKD KASLLVHLRDE LNFAGDTGA+GRISV  KKKGRGLTFDLKGQQF GQI+PSATV+VV +G+TEAKVEGLFSEVCRLDY GNVFDAMGGEVLKGEMDDSYKFEEEDVNARGG  G       DKG+ GK+ K  R+KS GK R  +S
Sbjct:   50 KQQKEKLDEVPLIVPPAVCKDAKASLLVHLRDEALNFAGDTGAIGRISVGGKKKGRGLTFDLKGQQFSGQIIPSATVMVVGIGKTEAKVEGLFSEVCRLDYKGNVFDAMGGEVLKGEMDDSYKFEEEDVNARGGAGGDXXXXXRDKGEEGKSPKLTRKKSFGKGRGGSS 218
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BLAST of mRNA_P-fluviatile_contig1.403.1 vs. uniprot
Match: A0A7S3PWH9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWH9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.850e-9
Identity = 46/142 (32.39%), Postives = 71/142 (50.00%), Query Frame = 1 
Query:  280 LPLTISAAVCKDNKASLLVHLRDE---TLNFAGDTGAVGRISVESKKKGRGLTFDLKGQQFRGQIVPSATVLVVAV----GRTEAKVEGLFSEVCRLDYMGNVFDAMGGEVLKGEMDDSYKFEEEDVNARGGGAHAEVDDDK 684
            L L +S      N+ ++LV +  E   TL+F G  GAVGR  V        +  DLKG Q++G++    T L+ ++    G    KVE +  E  +L   G+    +   V KGEMDDS++ ++ +VN+R     A   DD+
Sbjct:   29 LSLLMSGTSSGSNECTVLVQVNPEDASTLDFHGAGGAVGRFEVNENA----VIMDLKGFQYQGKLEAGPTCLMGSMHPLMGERMIKVESITDEYVQLQKTGDHMAQLDAVVEKGEMDDSFRIKDNNVNSRAATRGATNSDDR 166
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BLAST of mRNA_P-fluviatile_contig1.403.1 vs. uniprot
Match: A0A803PRU0_CANSA (Uncharacterized protein n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PRU0_CANSA)

HSP 1 Score: 68.2 bits (165), Expect = 1.520e-8
Identity = 41/137 (29.93%), Postives = 72/137 (52.55%), Query Frame = 1 
Query:  229 EEGGGSRSKRPKEQLNELPLTISAAVCKDNKASLLVHLRDETLNFAGDTGAVGRISVESKKKGRG-LTFDLKGQQFRGQIVPSATVLVVAVGRTEAKVEGLFSEVCRLDYMGNVFDAMGGEVLKGEMDDSYKFEEED 636
            EEG   +    +      PL +S  V    +   LV    ++++ AGD GAVGR+ +     G   +  DLKG  ++  IVPS T  VV+ G++EAK+E + ++  +L    NVF++    +++G +D  + F+ ++
Sbjct:  216 EEGAPEKQVESRVSSGRFPLILSEKV---QRTKALVECEGDSIDLAGDIGAVGRVVISDAASGDPEMYLDLKGTIYKTTIVPSRTFCVVSFGQSEAKIEAIMNDFIQLKPQSNVFESET--MVEGTLD-GFSFDSDE 346
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BLAST of mRNA_P-fluviatile_contig1.403.1 vs. uniprot
Match: A0A2P6V702_9CHLO (DNA-binding BIN4-like isoform A n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V702_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 2.860e-5
Identity = 32/92 (34.78%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:  358 NFAGDTGAVGRISVESKKKGRGLTFDLKGQQFRGQIVPS-ATVLVVAVGRTEAKVEGLFSEVCRLD----YMGNVFDAMGGEVLKGEMDDSY 618
            + +GD+GA+GR+ +   K+   L  D+KG  +   +VP  AT+ ++ +G++EAKVE LF+E  +L     +  N  D +GG +++G+ D +Y
Sbjct:  221 DLSGDSGAIGRLMIGGSKEEPQLQLDVKGVLYNATVVPCPATIALINMGQSEAKVECLFTEFVQLREDTRFSFNDADQLGG-LVEGDDDGNY 311
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LI36_ECTSI1.260e-7275.15Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3PWH9_9STRA8.850e-932.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A803PRU0_CANSA1.520e-829.93Uncharacterized protein n=3 Tax=Cannabis sativa Ta... [more]
A0A2P6V702_9CHLO2.860e-534.78DNA-binding BIN4-like isoform A n=2 Tax=Micractini... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4615093..4618270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue5.4e-13
Seed eggNOG ortholog159749.K0R1V7
EggNOG OGs28MC6@1,2RWCV@2759,2XDMT@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBIN4 component of topoisomerase VI
Ec32 orthologEc-04_003090.1
Exons5
Model size1663
Cds size735
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.1386533-UTR-P-fluviatile_contig1:4615092..46151611622815331.1386533-UTR-P-fluviatile_contig1:4615092..4615161Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4615093..4615161 +
1693561524.2733843-UTR-P-fluviatile_contig1:4615092..46151611693561524.2733843-UTR-P-fluviatile_contig1:4615092..4615161Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4615093..4615161 +
1622815331.236021-UTR-P-fluviatile_contig1:4617411..46182701622815331.236021-UTR-P-fluviatile_contig1:4617411..4618270Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4617412..4618270 +
1693561524.4520817-UTR-P-fluviatile_contig1:4617411..46182701693561524.4520817-UTR-P-fluviatile_contig1:4617411..4618270Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4617412..4618270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.1788874-CDS-P-fluviatile_contig1:4615161..46153591622815331.1788874-CDS-P-fluviatile_contig1:4615161..4615359Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4615162..4615359 +
1693561524.2850945-CDS-P-fluviatile_contig1:4615161..46153591693561524.2850945-CDS-P-fluviatile_contig1:4615161..4615359Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4615162..4615359 +
1622815331.1903238-CDS-P-fluviatile_contig1:4615929..46160291622815331.1903238-CDS-P-fluviatile_contig1:4615929..4616029Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4615930..4616029 +
1693561524.2930088-CDS-P-fluviatile_contig1:4615929..46160291693561524.2930088-CDS-P-fluviatile_contig1:4615929..4616029Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4615930..4616029 +
1622815331.2009938-CDS-P-fluviatile_contig1:4616307..46163821622815331.2009938-CDS-P-fluviatile_contig1:4616307..4616382Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4616308..4616382 +
1693561524.3052235-CDS-P-fluviatile_contig1:4616307..46163821693561524.3052235-CDS-P-fluviatile_contig1:4616307..4616382Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4616308..4616382 +
1622815331.2157097-CDS-P-fluviatile_contig1:4616662..46168181622815331.2157097-CDS-P-fluviatile_contig1:4616662..4616818Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4616663..4616818 +
1693561524.3155997-CDS-P-fluviatile_contig1:4616662..46168181693561524.3155997-CDS-P-fluviatile_contig1:4616662..4616818Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4616663..4616818 +
1622815331.2248287-CDS-P-fluviatile_contig1:4617205..46174111622815331.2248287-CDS-P-fluviatile_contig1:4617205..4617411Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4617206..4617411 +
1693561524.4286022-CDS-P-fluviatile_contig1:4617205..46174111693561524.4286022-CDS-P-fluviatile_contig1:4617205..4617411Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4617206..4617411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.403.1prot_P-fluviatile_contig1.403.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4615162..4617411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.403.1

>prot_P-fluviatile_contig1.403.1 ID=prot_P-fluviatile_contig1.403.1|Name=mRNA_P-fluviatile_contig1.403.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=245bp
MITQQSQSQTQQSQSQSQSQSQSQSQSQSQSQQPSQGDGANAIGDGMPGA
KGVEEGGGSRSKRPKEQLNELPLTISAAVCKDNKASLLVHLRDETLNFAG
DTGAVGRISVESKKKGRGLTFDLKGQQFRGQIVPSATVLVVAVGRTEAKV
EGLFSEVCRLDYMGNVFDAMGGEVLKGEMDDSYKFEEEDVNARGGGAHAE
VDDDKGDAGKAAKPGRRKSLGKKRSSASGPSSAKKGASKRAKTT*
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mRNA from alignment at P-fluviatile_contig1:4615093..4618270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.403.1 ID=mRNA_P-fluviatile_contig1.403.1|Name=mRNA_P-fluviatile_contig1.403.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3178bp|location=Sequence derived from alignment at P-fluviatile_contig1:4615093..4618270+ (Porterinema fluviatile SAG_2381)
CAAGATGACGGAGAGCACAGCAGTATCAGCGGTGGCATCAGCGGTGGGGA
CGAATCCGATGGTTTTGAGATGATTACACAGCAAAGCCAAAGCCAGACAC
AGCAGAGCCAAAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGC
CAGAGCCAGAGCCAGCAGCCATCGCAAGGAGACGGCGCTAATGCTATCGG
TGATGGAATGCCAGGAGCGAAAGGAGTAGAGGAGGGAGGAGGGTCGCGAT
CGAAGCGACCGAAAGAGGTACTTTAGTTGCTTTTGCCGATCTAGCTCTAC
TTGCCTGCTTCCTGAGTTCGACTGCATTTACTTTTCGATTCCTACTCTCC
CTCCCCATCCTGCATTTCCCACTCATTTTCGTCCTGGCCGGAAGCCCATC
GAAATCCCCTGCAATCGCAAGACTTTTGGCGTTCAATGAGGATCGGCCCG
ATCATATCAGATGCCCTGTCCGCGAAATCATGCATTGGCCCTGTCCCTCC
AGACACACACACGATCTGCCGCCATTTTTTCAAGTTTTCCGGCTCATGGC
ACAGGTCGCCGCTGTCGAGATGTTGAACGGAGCTGGCCCTGGAAGTATTT
CAACCTCGCATGTTTCTTGGGTAATGCTTCGGCGCACTATGCAACCTCCT
CTCTGTGTTTTACTAAAGACTCGAGAGAGCACGGGCGTGTTCCCAAAGAC
GTGTTACAAATCTTTCGTTGAACACCATTGAAAGAGAGGAATCCCGGCAA
GCACAGACGTTTCCCTCGTTCTCTAACCTCGTGCTCCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTAAGCAACTGAACGAGT
TGCCGCTTACCATTTCCGCGGCCGTCTGCAAGGACAACAAGGCGTCCCTG
CTTGTGCACCTTCGCGACGAAACTCTGAACTTCGCCGGTGAGATATTGAG
CAGATTAGGGGGATGGGTCGAATTTTTTTTTTTAAGTGTGGAGTGTTGAT
CCTTGGCAACGCCGCTCCCTTTCCACCTTTGTTTTGATACACGCGTGTAA
ATCTCTGTTAGCAGCTAGATTCGGACAACCTCGCAGACACGATACGAGCA
GACTTGGGCGTTTGTTTGTGTATGGCAGGGTCAACCAACACCGGCGCAGC
TGAAAAATCCTCGTGAATCGGCTCAGATTGTTCTCTGCTATCTTTTTCGT
GGGCTGCTTTGTCAGGTGACACCGGCGCAGTCGGGAGAATATCTGTGGAG
AGCAAAAAGAAAGGCCGAGGGCTGACTTTTGACCTCAAAGGTGCGAACGA
TCGGACCTGAGCTGCGCAGTGTGTTGGCATCCCCCTCCGCCTTCATGGCC
ATTTTCTTTTATGTGGTAAAGCGACGTCCTGTTTTTCCGATGGGAACGAA
GAGCGTCGTGCAGGGGAGAACTGAAGCGTAGTTTTTTTTTTGTTTTGCGT
TTTCTACTCCCTGACCCTCAGCCAAACTATCATGTTCTCCCATTCGCGCT
TCGGATCGCGCTCATCCCACACCCACGCTCCTCTGACGCCCTGCGGCATC
TGCCATCGTCCCTCGAACAGGGCAGCAGTTTAGGGGGCAGATAGTGCCAT
CCGCCACGGTGCTGGTGGTCGCGGTTGGCCGCACTGAGGCCAAGGTTGAG
GGGCTGTTCAGCGAGGTCTGTCGCTTGGACTACATGGGTAACGTGTTCGA
CGCGATGGGTGGGGAGGTCCTCAAAGGTGCGCGCCGCTTCACGTGCGACG
GCGAATACTCTTAGAGGCGGCAAAGGGCTGTTTCAATCGATGTATCATGA
GAGAAAGAAGCGCAACGATGCAGGGTCACCGTGTCCGTGTGTTCACCTCG
GCTTTCGGGCACTGCTCCCCCAAGCCCTCGTTTGCGACTTGCATTATGTC
ACCATAAAGTGATTTTGACGTCGCCATTTTACCGTATTGTCTACCTTGCG
ATGCTGTAGGGTTTCCATGTGTTTGGAGATGGATCGGGAAACCCGATCCG
GACAACAGCTTTGCCAGTGCCTACGTTGAAACCAAACAGAAGCAGCATGA
GCAGAGCCCGACCCTTTTTTCCCGTTCTCTCGCGTGTACCGTCACACTGT
GCCGCACCACCAGGTGAAATGGACGACTCTTACAAGTTTGAGGAAGAGGA
TGTAAACGCGAGAGGGGGCGGGGCACACGCAGAAGTCGATGATGACAAGG
GAGACGCGGGGAAAGCAGCGAAACCGGGCCGGAGAAAATCTCTCGGGAAA
AAGAGAAGTAGCGCTTCGGGCCCGTCTTCAGCCAAAAAGGGCGCGAGCAA
AAGAGCGAAGACAACGTGACCGCCGAGGGTGACCCAAGAGGCAAAGGGCT
TACATCGTGAAGTCGCAACACCTTTCCCGCCTCCGTGTTTCATTTCTCTG
TGCGTGCTTGATGTGTTCAACGGGGACTGTTTTCACGCGTTTACACAACA
TCGGTCGCCCCAGTTGTCTAGTGTGGGTAAACCCTTATGGTCGTTAGCAC
CAAAGTCGTGAGTTGGGATCCCGACGAGGGTGGATAATTTGAAACTTTGG
GGGGGCGGTTGTCTTCACATTAAACCCTCCTCTCCGTTCACTCCTAGTGT
CTGTACCCTATCCTGTCGGGAAACGATTTCGTGGTCACAGGCTTAGAAAA
TGACAACAGCTGAAAAGCTCGCGAGTATACAATCATTGGCTCCACTTTTG
ACGAGGGAAAGGAACGGCTGAACCCTTCTCGCAATGAAACATGAACCGCG
CACTGTGGGGCAAAACAGAAAAAACGAAAAGAAGTTAAAAGCCCCTGTGT
TGACCCCCTCCAGTGTAACCCCGGCTGGTCAATGGGATGAAAACACCTTC
TCTCGCCATCAATACCTCCGTGGCCATTCGTGCTGTCAGCCAGCTGTACC
TGCGTGCGACATTTGCGTGGCTGGCGTTTTGCTCTGAGCAACAGGGCGAC
CCAGGAGTGTGCCCCGTGTGCTCTTGTGTTTCTGCAGTAAGGGGGTTGCA
CCATCAAAGTTATTATTTCGTCGACTTTTCCCTTTCAACCCGCGCGCTAT
GCGCGATGTGGTCGGCAGGTGATAATTTGGGCCCATCCACCTGGATGTAA
TTACAGCGTACATTTGTTGGGTTTTTTGCTAAGATCACACTTCCGGAACA
GGACATTACCACTGTCTCACTCCTTCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4615093..4618270+

>mRNA_P-fluviatile_contig1.403.1 ID=mRNA_P-fluviatile_contig1.403.1|Name=mRNA_P-fluviatile_contig1.403.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1470bp|location=Sequence derived from alignment at P-fluviatile_contig1:4615093..4618270+ (Porterinema fluviatile SAG_2381)
ATGATTACACAGCAAAGCCAAAGCCAGACACAGCAGAGCCAAAGCCAGAG
CCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGCAGC
CATCGCAAGGAGACGGCGCTAATGCTATCGGTGATGGAATGCCAGGAGCG
AAAGGAGTAGAGGAGGGAGGAGGGTCGCGATCGAAGCGACCGAAAGAGAT
GATTACACAGCAAAGCCAAAGCCAGACACAGCAGAGCCAAAGCCAGAGCC
AGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGCAGCCA
TCGCAAGGAGACGGCGCTAATGCTATCGGTGATGGAATGCCAGGAGCGAA
AGGAGTAGAGGAGGGAGGAGGGTCGCGATCGAAGCGACCGAAAGAGCAAC
TGAACGAGTTGCCGCTTACCATTTCCGCGGCCGTCTGCAAGGACAACAAG
GCGTCCCTGCTTGTGCACCTTCGCGACGAAACTCTGAACTTCGCCGCAAC
TGAACGAGTTGCCGCTTACCATTTCCGCGGCCGTCTGCAAGGACAACAAG
GCGTCCCTGCTTGTGCACCTTCGCGACGAAACTCTGAACTTCGCCGGTGA
CACCGGCGCAGTCGGGAGAATATCTGTGGAGAGCAAAAAGAAAGGCCGAG
GGCTGACTTTTGACCTCAAAGGTGACACCGGCGCAGTCGGGAGAATATCT
GTGGAGAGCAAAAAGAAAGGCCGAGGGCTGACTTTTGACCTCAAAGGGCA
GCAGTTTAGGGGGCAGATAGTGCCATCCGCCACGGTGCTGGTGGTCGCGG
TTGGCCGCACTGAGGCCAAGGTTGAGGGGCTGTTCAGCGAGGTCTGTCGC
TTGGACTACATGGGTAACGTGTTCGACGCGATGGGTGGGGAGGTCCTCAA
AGGGCAGCAGTTTAGGGGGCAGATAGTGCCATCCGCCACGGTGCTGGTGG
TCGCGGTTGGCCGCACTGAGGCCAAGGTTGAGGGGCTGTTCAGCGAGGTC
TGTCGCTTGGACTACATGGGTAACGTGTTCGACGCGATGGGTGGGGAGGT
CCTCAAAGGTGAAATGGACGACTCTTACAAGTTTGAGGAAGAGGATGTAA
ACGCGAGAGGGGGCGGGGCACACGCAGAAGTCGATGATGACAAGGGAGAC
GCGGGGAAAGCAGCGAAACCGGGCCGGAGAAAATCTCTCGGGAAAAAGAG
AAGTAGCGCTTCGGGCCCGTCTTCAGCCAAAAAGGGCGCGAGCAAAAGAG
CGAAGACAACGTGAGTGAAATGGACGACTCTTACAAGTTTGAGGAAGAGG
ATGTAAACGCGAGAGGGGGCGGGGCACACGCAGAAGTCGATGATGACAAG
GGAGACGCGGGGAAAGCAGCGAAACCGGGCCGGAGAAAATCTCTCGGGAA
AAAGAGAAGTAGCGCTTCGGGCCCGTCTTCAGCCAAAAAGGGCGCGAGCA
AAAGAGCGAAGACAACGTGA
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