mRNA_P-fluviatile_contig1.401.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.401.1
Unique NamemRNA_P-fluviatile_contig1.401.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A7S0SGK9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGK9_9CHLO)

HSP 1 Score: 117 bits (293), Expect = 5.880e-28
Identity = 73/207 (35.27%), Postives = 118/207 (57.00%), Query Frame = 1 
Query:   73 AIITAINEFLGANRDPAAVLRHQKQHDEVLDDMRAILVTLESEGMRLSPIPLLLLKVLKVLLRKQSNRKALGRPGVHVVTALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIRSTSEQ----LKASGLGALQSVCFEKPGRDATRDSGIVGVVVSLLED--ESPKVRARALGSVHNLSTDARSIGIIRKEASLP 675
            A +  + +F+ AN DP     ++    + +D +  ++   E        + L  LK LK+L RKQ NR++ GR G++ V  L+ +     V+ E ANV+LN+CY+  NV   L  GG+E   PL+R   E+    L+A+  GA+QS+CF++ GR   RD   V  ++ LL +   + KV+ RA+G++HN+S+DA SI +IR +  +P
Sbjct:   42 AALAMLRDFVTANEDPRVSPNYKDDRPDQMDGLFTLMSAPECAADE--DLALHALKALKILSRKQENRQSFGRRGLNAVLRLLVAPPSSRVAGEGANVILNVCYEKENVDAILMCGGLE---PLVRFLGERTDPDLQANAAGAIQSICFQEKGRARVRDLDGVPAMLRLLGECRGNVKVQTRAIGAIHNMSSDADSIRLIRAQEGIP 243
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: C1EIP6_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EIP6_MICCC)

HSP 1 Score: 109 bits (272), Expect = 2.830e-24
Identity = 74/221 (33.48%), Postives = 113/221 (51.13%), Query Frame = 1 
Query:   76 IITAINEFLGANRDPAAVLRHQKQHDEVLDDMRAILVTLESEGMRLSPIPLLLLKVLKVLLRKQSNRKALGRPGVHVVT--ALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIRSTSE--QLKASGLGALQSVCFEKPGRDATRDSGIVGVVVSLL----------------EDESPKVRARALGSVHNLSTDARSIGIIRKEASLPN 678
            +   + EF+ AN D  A    + +  + L  + ++L   +  G +   + LL LK LK+L RK+ NR+  GR     V   AL        V+ E ANVVLN CY+  NV+H LE GGV+ L   +  T E  + +++  GA+QSVCF+ PGR   RD   V  +V+L+                +DE    RAR +G++HN+S D  +I ++R    +P+
Sbjct:   31 VARTLREFVDANEDARASPNLRDERRDELGGITSLLTDGDLPGDQ--DLALLALKTLKILSRKEDNRRRFGRELCRAVVRLALTHPRASHAVTAEGANVVLNACYEKENVEHVLECGGVQPLVRRVADTGESWRCRSAAAGAVQSVCFQAPGRCRVRDCDGVAALVALMKELDRREGGTRDSSFTDDERSMCRARVVGALHNVSADDDAIRLVRLSDGVPH 249
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A5B8MZ58_9CHLO (ARM repeat domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MZ58_9CHLO)

HSP 1 Score: 108 bits (269), Expect = 3.700e-24
Identity = 70/208 (33.65%), Postives = 115/208 (55.29%), Query Frame = 1 
Query:   40 LQPSGVENGQAAIITAINEFLGANRDPAAVLRHQKQHDEVLDDMRAILVTLESEGMRLSPIPLLLLKVLKVLLRKQSNRKALGRPGV-HVVTALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIRSTSEQLKASGLGALQSVCFEKPGR-DATRDSGIVGVVVSLLEDESPKVRARALGSVHNLSTDARSIGIIR 657
            L P   E G   +   +  F+  N +P+    ++ + ++ L  +  ++ ++  +   +S      L  LK+L RKQ NR+A+   G  H+ +       V T++ ECANV+LN CY+  NV  FL  GGV+ L   + S    ++A+  GALQSV + + GR +     G++  +V+LL  + PKVRARA+G++HNLS++  +I IIR
Sbjct:   45 LPPQQQEEG---LTRKLETFVKENAEPSTSSNYKSEEEDDLGPLMELVGSVIDDHDLMSSA----LTCLKILSRKQRNRRAIVLTGFKHLASCADFVRNVPTLAAECANVLLNFCYERQNVGLFLSCGGVKVLETYLESEDRGVQANAAGALQSVSYHEEGRKELLASEGLLPRIVNLLASQEPKVRARAVGALHNLSSEPGTIRIIR 245
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A7S3XPP0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPP0_HETAK)

HSP 1 Score: 104 bits (259), Expect = 1.890e-23
Identity = 70/173 (40.46%), Postives = 96/173 (55.49%), Query Frame = 1 
Query:   16 LSSINRLLLQPSGVENGQAAIITAINEFLGANRDPAAVLRHQKQHDEVLDDMRAILVTLESEGMRLSPIPLLLLKVLKVLLRKQSNRKALGRPGVHVVTALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIRSTSEQLKASGLGALQSVCFEKPGRDATR 534
            L +IN LL  P  +E  +  +  AI+ FL AN DP+          E  DD+  +     +E  R S + + +LKV KVL+RKQ+NR  +    V  +  ++SS      + E ANVVLNMCYD+ NV  F++ GG  AL PL +S    L+ S LGALQSV ++K GR A R
Sbjct:    4 LDTINGLLRAPQALETRRDKLKEAIDNFLMANLDPS---NSPNLLHEAPDDIMPLFEVFGTEVFRRSDLLVPMLKVAKVLMRKQANRALIQDAHVLSLIPVLSSPKNVMAAREAANVVLNMCYDSQNVSTFVQNGGARALLPLTQSADIHLQGSALGALQSVSYQKEGRSALR 173
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A7S0IGD7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IGD7_MICPS)

HSP 1 Score: 102 bits (255), Expect = 8.600e-22
Identity = 74/223 (33.18%), Postives = 110/223 (49.33%), Query Frame = 1 
Query:   76 IITAINEFLGANRDPAAVLRHQKQHDEVLDDMRAILVTLESEGMRLSPIPLLLLKVLKVLLRKQSNRKALGRPGVHVVT--ALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIRSTSEQLK--ASGLGALQSVCFEKPGRDATRDSGIVGVVVSLL------------------EDESPKVRARALGSVHNLSTDARSIGIIRKEASLPN 678
            +   + EF+ AN    A    + +  + L  + ++L   +  G +   + LL LK LK+L RK+ NR+  GR     V   AL        V+ E ANVVLN CY+  NV++ LE GGVE L   +  T E L+  ++  GA+QSVCF+ PGR   RD   V  +V+L+                  +DE    RAR +G++HN+  D  +I  IR    +P+
Sbjct:   58 VARTLREFVDANEGARASPNLRDERRDELGGITSLLTDGDLPGDQ--DLALLALKTLKILSRKEDNRRRFGRELCRAVVRLALTHPRASHAVTAEGANVVLNACYEKENVEYVLECGGVEPLVRRVADTGETLRCRSAAAGAVQSVCFQAPGRCRVRDCDGVAALVALMKELDRASMPRDGSAGRFTDDERSMCRARVVGALHNVGADDDAIRAIRACDGIPH 278
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A836CNB1_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.260e-20
Identity = 72/188 (38.30%), Postives = 102/188 (54.26%), Query Frame = 1 
Query:   16 LSSINRLLLQPSGVENGQAAIITAINEFLGANRDPAAVLRHQKQHDEVLDDMRAILVTLESEGMRLSPIPLL-LLKVLKVLLRKQSNRKALGRPGVHVVTALMSSTCVDT-VSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIR-STSEQLKASGLGALQSVCFEKPGRDATRDSGIVGVVVSLL 570
            L+ IN  L +  G     +   TA++ FL  N DPA   R    +   +DD   +   +       SP+ LL LL+VLK L+RK +NR+A G      V  L+S+  +    +CECANVVLN+CY+  NV  F + GG+  L  ++  S S  L  + LGALQS+CF+  GR+  R SG V +V +LL
Sbjct:    8 LNDINAALRRSPG-----SCFTTAVDAFLRCNADPA---RSPNLNFPEVDDTVLLYNAVAVGPGAHSPVRLLSLLRVLKYLMRKPANRRATGPTCAATVAMLLSNEALSADCACECANVVLNLCYETANVGLFCKHGGMAGLLRMLSPSCSVALHVAALGALQSLCFDAAGRERARVSGAVDLVAALL 187
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A3P3YJC6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJC6_PLABS)

HSP 1 Score: 82.8 bits (203), Expect = 4.200e-15
Identity = 49/145 (33.79%), Postives = 78/145 (53.79%), Query Frame = 1 
Query:  235 LKVLKVLLRKQSNRKALGRPGVHVVTALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIRSTSEQLKASGLGALQSVCFEKPGRDATRDSGIVGVVVSLL----EDESPKVRARALGSVHNLSTDARSIGIIR 657
            L +LK+L RK  NR   G   +  V A MS++    V   CANV++N C++   V H + + GV  +  L+      +  +  G L+SV  E+ GR A   +  + ++V LL    E   P+V ARA+ ++HNL+ D ++IG +R
Sbjct:   66 LNILKILCRKDCNRFQFGVRAIGAVVAAMSNSTSMEVLAACANVLMNACHNRSCVDHLVALNGVPGIVQLLECKHAGVVCAAAGVLRSVACERTGRQAILQTRAIPLLVPLLSAPQEGPIPRVCARAIATLHNLTCDHQAIGQLR 210
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A7S3DH06_9EUKA (Hypothetical protein n=3 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DH06_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 5.190e-8
Identity = 42/146 (28.77%), Postives = 76/146 (52.05%), Query Frame = 1 
Query:   88 INEFLGANRDPAAVLRHQKQHDEVLDDMRAILVTLES-EGMRLSPIPLLLLKVLKVLLRKQSNRKALGRPGVHVVTALMSSTCVD---------------TVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIRSTSEQLKAS 477
            +N+F+ AN DP++    ++   +  DDM  ++   +    +    + +L LK+L+++ RK+ NR+A+    V  V +++    +D                + CE A+ +LN+CY+  NV  F++ GG E L PL+ S  E+L AS
Sbjct:   82 MNKFILANEDPSSSPNFEESEQQ--DDMNGLVSCFQLLPYLSDDDVSVLALKMLRIVARKEVNRRAVDGEVVRAVLSILIKKGLDGKVGSTDPGVRPQARAIVCEAASCMLNICYEKENVMLFVQHGGTEVLCPLLASADEELVAS 225
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A7R9VV28_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VV28_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 1.150e-7
Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:   76 IITAINEFLGANRDPAAVLRHQKQHDEVLDDMRAILVTLESEGMRLSP-IPLLLLKVLKVLLRKQSNRKALGRPGVHVVTALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVG 420
            ++  +  F+  N DP           E  D +   +  L S G+     + LLLLKVLK+L RK SNR ALG  GV  + A +SS     V+ E ANV+LN CY+  NV   L+ G
Sbjct:   43 LLRQLRRFVAPNEDPNT---SDNLRSEEPDPVAPFVDLLLSPGLEDDEAVVLLLLKVLKILSRKASNRLALGADGVRALLAHLSSPLSQPVAAEGANVLLNACYEPENVALLLQTG 155
[Close]
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Match: A0A7S0MWF1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MWF1_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 2.200e-7
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 1 
Query:  226 LLLLKVLKVLLRKQSNRKALGRPGVHVVTALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIRSTSEQLKAS 477
            LLLLKV K+L RKQ NR  LG   +  V   +       ++ E ANV+LN CY+  NV   L  GGV+AL   + +  ++L+A+
Sbjct:    3 LLLLKVFKILSRKQQNRAKLGEGVIKAVVKFLEKPKTSKIAGEGANVILNACYEKENVDIVLNCGGVKALVGFLTTEDQELQAN 86
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7S0SGK9_9CHLO5.880e-2835.27Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
C1EIP6_MICCC2.830e-2433.48Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A5B8MZ58_9CHLO3.700e-2433.65ARM repeat domain-containing protein n=1 Tax=Chlor... [more]
A0A7S3XPP0_HETAK1.890e-2340.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0IGD7_MICPS8.600e-2233.18Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A836CNB1_9STRA2.260e-2038.30Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A3P3YJC6_PLABS4.200e-1533.79Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A7S3DH06_9EUKA5.190e-828.77Hypothetical protein n=3 Tax=Palpitomonas bilix Ta... [more]
A0A7R9VV28_9CHLO1.150e-737.93Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S0MWF1_9CHLO2.200e-740.48Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4602536..4605979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score108.2
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog296587.XP_002506791.1
EggNOG free text desc.Armadillo/beta-catenin-like repeats
EggNOG OGs2E34T@1,2SA9J@2759,37WJK@33090
COG Functional cat.S
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size693
Cds size693
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.401.1prot_P-fluviatile_contig1.401.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4602536..4605979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815330.824253-CDS-P-fluviatile_contig1:4602535..46026931622815330.824253-CDS-P-fluviatile_contig1:4602535..4602693Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4602536..4602693 -
1693561524.0926595-CDS-P-fluviatile_contig1:4602535..46026931693561524.0926595-CDS-P-fluviatile_contig1:4602535..4602693Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4602536..4602693 -
1622815330.8517866-CDS-P-fluviatile_contig1:4603055..46031191622815330.8517866-CDS-P-fluviatile_contig1:4603055..4603119Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4603056..4603119 -
1693561524.1047928-CDS-P-fluviatile_contig1:4603055..46031191693561524.1047928-CDS-P-fluviatile_contig1:4603055..4603119Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4603056..4603119 -
1622815330.8928947-CDS-P-fluviatile_contig1:4603436..46034931622815330.8928947-CDS-P-fluviatile_contig1:4603436..4603493Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4603437..4603493 -
1693561524.1170712-CDS-P-fluviatile_contig1:4603436..46034931693561524.1170712-CDS-P-fluviatile_contig1:4603436..4603493Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4603437..4603493 -
1622815330.907623-CDS-P-fluviatile_contig1:4604155..46042281622815330.907623-CDS-P-fluviatile_contig1:4604155..4604228Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4604156..4604228 -
1693561524.1292038-CDS-P-fluviatile_contig1:4604155..46042281693561524.1292038-CDS-P-fluviatile_contig1:4604155..4604228Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4604156..4604228 -
1622815330.9205446-CDS-P-fluviatile_contig1:4604624..46047251622815330.9205446-CDS-P-fluviatile_contig1:4604624..4604725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4604625..4604725 -
1693561524.1373417-CDS-P-fluviatile_contig1:4604624..46047251693561524.1373417-CDS-P-fluviatile_contig1:4604624..4604725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4604625..4604725 -
1622815330.933019-CDS-P-fluviatile_contig1:4604943..46050231622815330.933019-CDS-P-fluviatile_contig1:4604943..4605023Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4604944..4605023 -
1693561524.146-CDS-P-fluviatile_contig1:4604943..46050231693561524.146-CDS-P-fluviatile_contig1:4604943..4605023Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4604944..4605023 -
1622815330.9428914-CDS-P-fluviatile_contig1:4605533..46056381622815330.9428914-CDS-P-fluviatile_contig1:4605533..4605638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4605534..4605638 -
1693561524.1552408-CDS-P-fluviatile_contig1:4605533..46056381693561524.1552408-CDS-P-fluviatile_contig1:4605533..4605638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4605534..4605638 -
1622815330.9520392-CDS-P-fluviatile_contig1:4605924..46059791622815330.9520392-CDS-P-fluviatile_contig1:4605924..4605979Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4605925..4605979 -
1693561524.1697147-CDS-P-fluviatile_contig1:4605924..46059791693561524.1697147-CDS-P-fluviatile_contig1:4605924..4605979Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4605925..4605979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.401.1

>prot_P-fluviatile_contig1.401.1 ID=prot_P-fluviatile_contig1.401.1|Name=mRNA_P-fluviatile_contig1.401.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=231bp
MVNAALSSINRLLLQPSGVENGQAAIITAINEFLGANRDPAAVLRHQKQH
DEVLDDMRAILVTLESEGMRLSPIPLLLLKVLKVLLRKQSNRKALGRPGV
HVVTALMSSTCVDTVSCECANVVLNMCYDAGNVQHFLEVGGVEALGPLIR
STSEQLKASGLGALQSVCFEKPGRDATRDSGIVGVVVSLLEDESPKVRAR
ALGSVHNLSTDARSIGIIRKEASLPNQREC*
back to top

mRNA from alignment at P-fluviatile_contig1:4602536..4605979-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.401.1 ID=mRNA_P-fluviatile_contig1.401.1|Name=mRNA_P-fluviatile_contig1.401.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3444bp|location=Sequence derived from alignment at P-fluviatile_contig1:4602536..4605979- (Porterinema fluviatile SAG_2381)
ATGGTGAACGCGGCTCTCTCTTCGATCAATCGGCTCCTCCTCCAGCCTTC
CGGAGGTAAATCTTCCATTCCCTCCAGTTGGAATATGTCGTCTGCGTGCT
TCTGCGATCTCACCCGGCATCTTACACCACAATCCAGCGCGTGTGTGTGC
GTCTGTTGCGTACGAGAGAACCAATGTACAGACCAAGTCGTCAAGAAACT
GTAGGAAACTAACCGCGGATCAGTTCGATGTTACTTTTTCGCGAGTATTA
TGTCTGCCTCATCTTAGTACAGTGCTTGTCGGACGGTGATAGCTAAGCCC
GTCGTGCAACGGTTTCTCGTATTGTACCGAAAAATGACAAGTGGAGAACG
GGCAGGCAGCCATCATCACGGCCATAAACGAGTTTCTCGGGGCGAACCGA
GATCCCGCGGCAGTGCTGAGACATCAAAAGCAGCACGACGAGGTACGTCT
TATGTCGACTCGTCAAAGCTATGAAATGTAACCATACCGCCACCCTTCCT
GCATACCGACGCACACCGACCCTACCAAAAAAAATCGTAGACGTCTAAGC
GCCGTTCACGAGTATCATGAATGAAGCCAACGCCGCATTTTGGCAGGAGA
TTTCTTTAAAGGTTGTACAAATTGTACAGTCAGTAATTCAATACGTACAT
TGGAAGAAATGACGTACAAGGCGAACCTTCTGTTAGAAACATCATGGAAT
GACCAGATGTATGCATGACTTGCACCCCTAGGCATGCGTCTACACATAGT
GAGTGCACGATTACATGCCGAATCAACATCGAGCCCTCGAGCTATAAAAG
ATCAACGAAGGAATCCCCCTCACCATGACCGAATGTTTTCCGGAGTACAG
CGTCCTTTGTGCTATACATCGTCAATCTTTGTCCCTTTTCCCATTTTCCC
GGCGTCATAAGGTATATTTATACCCCCACCAAACTGCCTCTTATCCACTC
AGGGAGTTGATGACATGCGGGCGATCTTGGTAACGCTCGAGTCGGAGGGA
ATGCGTTTAAGCCCTATCCCCCTACTTCTGCTGAAGGTAGAAAATTGATG
TCATGGTCATTCAGCGCCTAAGTTGCGTGATACTCGCTTGGAGCTGTTAA
GCATACATGTTATAAAAACGCGTCGTAAGACTTTTAGTCCAGAGGTATCC
GACACGCTGAGCTTGCCCTGTTGGCCAGTCCACCCTCGCGCCAATCTACT
TTCAATCAAACATCACAACGACATGGCTTGTATCTAACCCAAACGCGTAA
CCAGGTCTTGAAGGTGTTGCTGCGTAAACAATCAAATCGGAAGGCTCTGG
GCCGGCCAGGGGTCCACGTTGTCACCGCCCTGATGAGTTCGACCTGCGTC
GACACGTGAGAAGAAGGAGAGCGGGACGATGGAAGTCGCACATGTTTCGT
TCTGACGGGGGGCATCCGTGTTGTCAACAGGATCGACTGTGTCAAACTGG
AGCTCAGTTCAAAACATTATTTGCTCGCTCTCTCTCGTACTTGTGGTGGC
TTCCCTGACCTCCCCGACCTCTAGGCCTCTACCACCCCCAACTGGCTGCT
GAAAATGCGGCAGTTCCGCCCTCTAACCATTTATGTGAGGTTTGATCAAA
CCACGTACTTCAAATCGACGAAACTTTCCGCCGCGTCCTCTTCTTGTCTT
CCATTCTTCCCCTTCCTCCAAACGTTTTTTTCGCTTCCCCACGCCATCCT
CCATCCCTTCCTACGCTTTCGGTCTATGTTTTCCCCGATCTGCTTTAGCA
GGGTGTCGTGCGAGTGCGCAAACGTGGTTTTGAACATGTGTTACGACGCC
GGCAATGTGCAGCACTTCTTGGAGGTCAGTCGATGTTATCCACCTCACCT
CGCGCCGTGAGAGAACGTCACCCTCATCTGTCAATATCAACGCTGCTTTG
GATTGCAGAAAGAACCTTGCTCCTTCTTTGTGCTCGCTGGTCTCCGCAGA
AAACGGTCGACTTCGGCACTAGAGACACTATAGCGCAGCCCGCCTCGTCA
CATGACGTGGGAATCAGAACGTACGTATTTCGTCCTTCCTTTGTCGAATA
TCGCAGTGCTTGCCGGGTTTGGCTGCTGCTGCTGCACGGTCTGTATCAAC
ACAATCAATTTCTGATACATTTGTGAATGCAGCCTGGTCATAGGTGACGC
ACTGCCAGTAAATTCTTGGTCTAATGTCGTTTAGGCACAGCAGGATCAGG
TTAAATATCAAATCGATAACTGCGTCGTCGGCGCATAGGCTCGGGGAAAA
GTGGAAGTCAGCTGTGCCCGTGCTACTCTGTGTTTGCCCAACTTTCGCCA
TCACCAGCGTTGCCACCTTGCCTTGAGCCAATTTATCGCTGATGTTGAAA
CTTCGCGCAGCCGCCACTCTGCCGAATTTCCCCACCTCGGAGAAGAAACC
GCACTGGTTCAGCGACGATGAAACCCCCAACGGGAATAAGAAACACCTCC
CGCTCAACCTTTTGCACACGTGATGACCACCGTTAGGTTGGCGGTGTGGA
AGCGCTCGGACCCTTGATACGTTCTACCAGCGAGCAGTTGAAGGTACAAG
AAGTCCTCGCCTGTGACCCTGCTGTTGTAGCATTCTGCTTCGCAGCGTGA
TTCACGGCGCGCACCCCAGCTATGCACGGGTCTCGCCGGGGTGTGTACAA
TCCCTTGCCCTTACCCGTTGTGATTTCCGGAATCGAGTTCCGTATGTACC
ATTCGCGAGCTCGTTCCATTTAGGGAGACGAGCTCTCCCTCGTACATTTG
TGCATATGCGTGTTCCTTTGTCCCTTGCATAACCCGCTCACGTTCCTCAT
TGTGATACCGATTACGTGCGATATCCTTGAAGAACTCCCTCCCCGCCCTT
TTTAATCTAGGCCAGCGGGCTCGGGGCGCTACAGAGTGTTTGCTTCGAAA
AACCTGGCCGAGACGCCACCCGAGGTGAATACTTTAATAGCGTCGTCGGA
CCTTGGGACGACGACAAAAGCCACACACTTCCCCCCCCGAAGATGTATGC
TTCCGTTTGATGTCCACTTTAATCAGCGCAAGGGCGCTTGATGTGCCTCA
AATCAACTTCTCGAGCTCAAGCAATCATTGCTGCAGTGCTTTTTCCTCGA
GTGTTGGCTTTGACGTGGCCTCATTGACGCGAGTCCGCAAAACCGATTCC
CCTGACGTTCATCGCAGAAGCTCAGGAGCAAGTCTATATTGCTGGTCAAC
ATCGGCAAACAAGAGTCATGCTTAGACAGTCTAACCTGTTGAAGGTGTCC
GGAAATTTGTTCGCTCATTTACTTATTGGCCAACAGACAGCGGGATCGTT
GGCGTGGTGGTCAGCCTGCTGGAGGACGAGAGCCCCAAGGTGCGCGCAAG
AGCGCTGGGCTCCGTCCACAACCTCAGCACCGATGCTCGGAGCATCGGCA
TCATTCGGAAGGAGGCGAGCTTGCCGAATCAGAGAGAGTGCTAG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:4602536..4605979-

>mRNA_P-fluviatile_contig1.401.1 ID=mRNA_P-fluviatile_contig1.401.1|Name=mRNA_P-fluviatile_contig1.401.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1386bp|location=Sequence derived from alignment at P-fluviatile_contig1:4602536..4605979- (Porterinema fluviatile SAG_2381)
ATGGTGAACGCGGCTCTCTCTTCGATCAATCGGCTCCTCCTCCAGCCTTC
CGGAGATGGTGAACGCGGCTCTCTCTTCGATCAATCGGCTCCTCCTCCAG
CCTTCCGGAGTGGAGAACGGGCAGGCAGCCATCATCACGGCCATAAACGA
GTTTCTCGGGGCGAACCGAGATCCCGCGGCAGTGCTGAGACATCAAAAGC
AGCACGACGAGGTACTGGAGAACGGGCAGGCAGCCATCATCACGGCCATA
AACGAGTTTCTCGGGGCGAACCGAGATCCCGCGGCAGTGCTGAGACATCA
AAAGCAGCACGACGAGGTACTTGATGACATGCGGGCGATCTTGGTAACGC
TCGAGTCGGAGGGAATGCGTTTAAGCCCTATCCCCCTACTTCTGCTGAAG
TTGATGACATGCGGGCGATCTTGGTAACGCTCGAGTCGGAGGGAATGCGT
TTAAGCCCTATCCCCCTACTTCTGCTGAAGGTCTTGAAGGTGTTGCTGCG
TAAACAATCAAATCGGAAGGCTCTGGGCCGGCCAGGGGTCCACGTTGTCA
CCGCCCTGATGAGTTCGACCTGCGTCGACACGTCTTGAAGGTGTTGCTGC
GTAAACAATCAAATCGGAAGGCTCTGGGCCGGCCAGGGGTCCACGTTGTC
ACCGCCCTGATGAGTTCGACCTGCGTCGACACGGTGTCGTGCGAGTGCGC
AAACGTGGTTTTGAACATGTGTTACGACGCCGGCAATGTGCAGCACTTCT
TGGAGGGTGTCGTGCGAGTGCGCAAACGTGGTTTTGAACATGTGTTACGA
CGCCGGCAATGTGCAGCACTTCTTGGAGGTTGGCGGTGTGGAAGCGCTCG
GACCCTTGATACGTTCTACCAGCGAGCAGTTGAAGGTTGGCGGTGTGGAA
GCGCTCGGACCCTTGATACGTTCTACCAGCGAGCAGTTGAAGGCCAGCGG
GCTCGGGGCGCTACAGAGTGTTTGCTTCGAAAAACCTGGCCGAGACGCCA
CCCGAGGCCAGCGGGCTCGGGGCGCTACAGAGTGTTTGCTTCGAAAAACC
TGGCCGAGACGCCACCCGAGACAGCGGGATCGTTGGCGTGGTGGTCAGCC
TGCTGGAGGACGAGAGCCCCAAGGTGCGCGCAAGAGCGCTGGGCTCCGTC
CACAACCTCAGCACCGATGCTCGGAGCATCGGCATCATTCGGAAGGAGGC
GAGCTTGCCGAATCAGAGAGAGTGCTAGACAGCGGGATCGTTGGCGTGGT
GGTCAGCCTGCTGGAGGACGAGAGCCCCAAGGTGCGCGCAAGAGCGCTGG
GCTCCGTCCACAACCTCAGCACCGATGCTCGGAGCATCGGCATCATTCGG
AAGGAGGCGAGCTTGCCGAATCAGAGAGAGTGCTAG
back to top