prot_P-fluviatile_contig20.4236.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig20.4236.1
Unique Nameprot_P-fluviatile_contig20.4236.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length141
Homology
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BLAST of mRNA_P-fluviatile_contig20.4236.1 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.100e-27
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 0 
Query:   59 GDVITFSLCKYYAAGRCERPDSCRHRHAAQKVSEEEVSLQRPDGLAGAIRSLVQWRGKPDHVFSACDDGRVKVRS 133
            GD ITFS+CK+YAAG C+R  SCRHRHA QKVSE  VS +  DG  GA+RSLVQW+ KPDHVFSACDDG VK+ S
Sbjct:   61 GDTITFSVCKFYAAGNCDRAASCRHRHAVQKVSEAVVS-EESDGFRGAVRSLVQWKDKPDHVFSACDDGTVKMWS 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4236.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJM7_ECTSI1.100e-2770.67C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 66..88
score: 11.958
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 65..86

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:75617..76719 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4236.1mRNA_P-fluviatile_contig20.4236.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig20 75617..77372 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig20.4236.1 ID=prot_P-fluviatile_contig20.4236.1|Name=mRNA_P-fluviatile_contig20.4236.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=141bp
TLSHRPSADCTLPSGSSRGGRYDPGRSGGYDTGRGGGYEGRGRGRGGAGG
RGSGRGHGGDVITFSLCKYYAAGRCERPDSCRHRHAAQKVSEEEVSLQRP
DGLAGAIRSLVQWRGKPDHVFSACDDGRVKVRSVASLLIG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf