mRNA_P-fluviatile_contig20.4236.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4236.1
Unique NamemRNA_P-fluviatile_contig20.4236.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig20.4236.1 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.120e-25
Identity = 53/75 (70.67%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:  175 GDVITFSLCKYYAAGRCERPDSCRHRHAAQKVSEEEVSLQRPDGLAGAIRSLVQWRGKPDHVFSACDDGRVKVRS 399
            GD ITFS+CK+YAAG C+R  SCRHRHA QKVSE  VS +  DG  GA+RSLVQW+ KPDHVFSACDDG VK+ S
Sbjct:   61 GDTITFSVCKFYAAGNCDRAASCRHRHAVQKVSEAVVS-EESDGFRGAVRSLVQWKDKPDHVFSACDDGTVKMWS 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJM7_ECTSI4.120e-2570.67C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:75617..77372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue8.8e-24
Seed eggNOG ortholog2880.D8LJM7
KEGG koko:K10267,ko:K10646
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
EC2.3.2.27
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size1076
Cds size423
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4236.1prot_P-fluviatile_contig20.4236.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 75617..76719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815894.396124-CDS-P-fluviatile_contig20:75616..758611622815894.396124-CDS-P-fluviatile_contig20:75616..75861Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 75617..75861 +
1693563667.8629832-CDS-P-fluviatile_contig20:75616..758611693563667.8629832-CDS-P-fluviatile_contig20:75616..75861Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 75617..75861 +
1622815894.4131598-CDS-P-fluviatile_contig20:76541..767191622815894.4131598-CDS-P-fluviatile_contig20:76541..76719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 76542..76719 +
1693563667.8760357-CDS-P-fluviatile_contig20:76541..767191693563667.8760357-CDS-P-fluviatile_contig20:76541..76719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 76542..76719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815894.424071-UTR-P-fluviatile_contig20:76719..773721622815894.424071-UTR-P-fluviatile_contig20:76719..77372Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 76720..77372 +
1693563667.8916993-UTR-P-fluviatile_contig20:76719..773721693563667.8916993-UTR-P-fluviatile_contig20:76719..77372Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 76720..77372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4236.1

>prot_P-fluviatile_contig20.4236.1 ID=prot_P-fluviatile_contig20.4236.1|Name=mRNA_P-fluviatile_contig20.4236.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=141bp
TLSHRPSADCTLPSGSSRGGRYDPGRSGGYDTGRGGGYEGRGRGRGGAGG
RGSGRGHGGDVITFSLCKYYAAGRCERPDSCRHRHAAQKVSEEEVSLQRP
DGLAGAIRSLVQWRGKPDHVFSACDDGRVKVRSVASLLIG*
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mRNA from alignment at P-fluviatile_contig20:75617..77372+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4236.1 ID=mRNA_P-fluviatile_contig20.4236.1|Name=mRNA_P-fluviatile_contig20.4236.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1756bp|location=Sequence derived from alignment at P-fluviatile_contig20:75617..77372+ (Porterinema fluviatile SAG_2381)
ACACTTTCACATCGTCCCTCCGCCGATTGTACCCTCCCCAGCGGCAGCAG
CAGAGGGGGTCGGTACGACCCAGGGAGGAGCGGCGGCTACGATACAGGCA
GAGGAGGGGGCTACGAGGGTAGGGGGAGAGGGAGAGGGGGAGCCGGCGGG
CGAGGATCGGGCCGCGGGCACGGGGGCGACGTGATTACCTTTAGCCTGTG
CAAATACTACGCCGCTGGTCGATGTGAGCGACCGGATAGCTGCAGGTGAC
GCTTGGCGGCGTGTTTATGTTCGATTCCGTGGGCCGGGTCGGGCGTACGG
GCTTGGAAGGTACTTTCTTTTTGGAAGCATCGTTGTAGTCTTGCGAACGT
AAATTCGTTCTCATCTCCGCCACGGCAGGGGCAGAAGAGGCCTGTTTGTA
TGGATGGAGACAAGGCATGCAAGCGACCATTGGTTCTGCCATGATTCGGG
CAAGGGAACAGCCGTTAGGTGTCATTGGTACGCACGTGCGTGTGTGCATT
TGCGCGAAGGGGCACAAAGGGCTGGCTTGCCTCTTGGCTTTACGACGTGG
CCCATCACCCCCGAAATTCTGCAATCGGCGAAAGTAATCGCCCTGAAAGC
CTGGAATTGCTTCAGCGCGGACCGCCGACCTCGTATTTTTTTCAGACTTT
GCGATCCTCGACAGCACGACAGGTCTAGCGAAATGTCCACGGTAGCAACA
TCAGCAGCAGCGTTGTCATCGTTTCGAAATTCTGCGCCTCATTTCTTGCC
GCGTTTGTGCAACAAGGTCATCGGTGACTTCGGTCCGCTTTTACCTGACG
GCGAGGCGGCTGCGGCCTGCTCTGGTACATGCCGTGTTTTGCACCTAACA
CAATCCTGATTTTTTCGCGCGCGTCTCTCGCTGTCCTTGTGGTAACATCG
ACCAAAAAAAAATAAAACACAACAGGCACCGACACGCGGCACAAAAGGTG
AGCGAGGAGGAGGTGTCCTTGCAGCGGCCGGACGGCCTCGCGGGCGCAAT
CCGGTCCCTGGTGCAGTGGAGAGGCAAGCCGGACCACGTCTTCTCGGCGT
GCGACGACGGAAGGGTTAAGGTGAGATCCGTGGCTTCGCTGTTGATTGGT
TGATTTGCTCCCATGAGTCGAGTCGAGTCGAGTCGAGTTGTCAGGTGTAA
CGCAGCGTGGTTTGCGGCAGGGAGGGGCGTACAGTACCAGCCCGCTCCTA
AGAATGGATATTTCGCCCGAGGCTGGGTTTCTTATGTTCGAACTTGAAAC
TGCTGCACAATTCTAGTGAAAACTCGTAAGTGGTTCTGATTTGGTTCGAA
TCTCGAGCCTCCATTTCTTATGGCCGCCCCGTTTCTCATGAGGAGGCCGA
TACTGTATTTTACCATCAAACATGCGTTGTTCGTGTATCTTCCTCTGTGT
CGGGTGTAACACTCGCTGTGCTTGAGGTGGCGTTGATTGTGCGAGTCGAG
TCGAGTCGAGCCGAGCCGTTTAGTGTACAAGACAAAGGAGGACGATGTCG
ATCCGAGCGCTGCCATCTCCATCGAACTCGCATCAATTTGCATTCTGCGT
GAGGCATCACCAACACCCTATCGTGAAGGTGAGGTGAGGGGAACCGCACC
TTGCCTTCAGCTTTCTCCCTCTTGCTTGCGTTGCTTGTTGTCAATGGCGG
AGCCCTTGGAATAGGAATGCCATTGGTGGCAATGCTTGAACACACGTCTG
TCAATAAAAGGAAGGTATGATTGGCGGCAGCATATAGACGCGAGCGTACC
GATGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig20:75617..77372+

>mRNA_P-fluviatile_contig20.4236.1 ID=mRNA_P-fluviatile_contig20.4236.1|Name=mRNA_P-fluviatile_contig20.4236.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=846bp|location=Sequence derived from alignment at P-fluviatile_contig20:75617..77372+ (Porterinema fluviatile SAG_2381)
ACACTTTCACATCGTCCCTCCGCCGATTGTACCCTCCCCAGCGGCAGCAG
CAGAGGGGGTCGGTACGACCCAGGGAGGAGCGGCGGCTACGATACAGGCA
GAGGAGGGGGCTACGAGGGTAGGGGGAGAGGGAGAGGGGGAGCCGGCGGG
CGAGGATCGGGCCGCGGGCACGGGGGCGACGTGATTACCTTTAGCCTGTG
CAAATACTACGCCGCTGGTCGATGTGAGCGACCGGATAGCTGCAGACACT
TTCACATCGTCCCTCCGCCGATTGTACCCTCCCCAGCGGCAGCAGCAGAG
GGGGTCGGTACGACCCAGGGAGGAGCGGCGGCTACGATACAGGCAGAGGA
GGGGGCTACGAGGGTAGGGGGAGAGGGAGAGGGGGAGCCGGCGGGCGAGG
ATCGGGCCGCGGGCACGGGGGCGACGTGATTACCTTTAGCCTGTGCAAAT
ACTACGCCGCTGGTCGATGTGAGCGACCGGATAGCTGCAGGCACCGACAC
GCGGCACAAAAGGTGAGCGAGGAGGAGGTGTCCTTGCAGCGGCCGGACGG
CCTCGCGGGCGCAATCCGGTCCCTGGTGCAGTGGAGAGGCAAGCCGGACC
ACGTCTTCTCGGCGTGCGACGACGGAAGGGTTAAGGTGAGATCCGTGGCT
TCGCTGTTGATTGGTTGAGCACCGACACGCGGCACAAAAGGTGAGCGAGG
AGGAGGTGTCCTTGCAGCGGCCGGACGGCCTCGCGGGCGCAATCCGGTCC
CTGGTGCAGTGGAGAGGCAAGCCGGACCACGTCTTCTCGGCGTGCGACGA
CGGAAGGGTTAAGGTGAGATCCGTGGCTTCGCTGTTGATTGGTTGA
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