mRNA_P-fluviatile_contig20.4269.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4269.1
Unique NamemRNA_P-fluviatile_contig20.4269.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig20.4269.1 vs. uniprot
Match: D8LJI1_ECTSI (N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.700e-5
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = -2 
Query:  461 PLRIGNLRSAKSDKPIVAIGIEGSANKV 544
            PLRIGNLRS KSDKP+VAIGIEGSANK+
Sbjct:    8 PLRIGNLRSPKSDKPLVAIGIEGSANKI 35
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJI1_ECTSI1.700e-589.29N6-L-threonylcarbamoyladenine synthase n=1 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:595013..595557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size545
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815892.1355407-UTR-P-fluviatile_contig20:595012..5951551622815892.1355407-UTR-P-fluviatile_contig20:595012..595155Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 595013..595155 +
1693563664.634773-UTR-P-fluviatile_contig20:595012..5951551693563664.634773-UTR-P-fluviatile_contig20:595012..595155Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 595013..595155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815892.1460357-CDS-P-fluviatile_contig20:595155..5955571622815892.1460357-CDS-P-fluviatile_contig20:595155..595557Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 595156..595557 +
1693563664.651447-CDS-P-fluviatile_contig20:595155..5955571693563664.651447-CDS-P-fluviatile_contig20:595155..595557Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 595156..595557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4269.1prot_P-fluviatile_contig20.4269.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 595156..595557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4269.1

>prot_P-fluviatile_contig20.4269.1 ID=prot_P-fluviatile_contig20.4269.1|Name=mRNA_P-fluviatile_contig20.4269.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=134bp
MGIIRVILVRALSCQVIPPTQQSPTRTLQPALFRAPCCTHISLHRIQLRN
NSPPSSNPPRMPPSLGNCQPIYQTTANFTLLEPLAVDISCLSPSIVQRRN
QQQQQRTLLALPSMPIATIGLSDFADRRFPMRSG
back to top

mRNA from alignment at P-fluviatile_contig20:595013..595557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4269.1 ID=mRNA_P-fluviatile_contig20.4269.1|Name=mRNA_P-fluviatile_contig20.4269.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=545bp|location=Sequence derived from alignment at P-fluviatile_contig20:595013..595557+ (Porterinema fluviatile SAG_2381)
GGGCAATCAATCTACAACAGTGTAGAGGTGGCGATTCAGAAGATGATCAA
TGTGCACCAAGCGGTACAGAGGGGCTCCCGATATAGTGCGGGCATGGGAC
GCGCGTTTCACCCGCAATATAGCAGGCAACTGCACGATTCAGAATGGGTA
TTATACGCGTTATACTTGTGAGAGCACTTTCGTGCCAAGTGATTCCACCC
ACACAACAATCACCAACCCGCACCTTACAACCCGCACTGTTTCGGGCCCC
CTGCTGTACCCACATTTCATTACACCGCATCCAGCTTCGCAACAACAGCC
CACCAAGCTCGAACCCCCCAAGAATGCCGCCTTCTCTTGGGAACTGCCAA
CCAATCTACCAAACAACAGCAAATTTTACACTGCTTGAACCGCTCGCTGT
CGATATCTCTTGCCTCTCGCCGTCGATTGTTCAACGGCGCAACCAGCAGC
AACAGCAGCGTACCTTGTTGGCGCTCCCTTCGATGCCAATCGCCACAATA
GGCTTATCTGACTTTGCCGATCGTAGATTTCCGATGCGTAGCGGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig20:595013..595557+

>mRNA_P-fluviatile_contig20.4269.1 ID=mRNA_P-fluviatile_contig20.4269.1|Name=mRNA_P-fluviatile_contig20.4269.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=804bp|location=Sequence derived from alignment at P-fluviatile_contig20:595013..595557+ (Porterinema fluviatile SAG_2381)
ATGGGTATTATACGCGTTATACTTGTGAGAGCACTTTCGTGCCAAGTGAT
TCCACCCACACAACAATCACCAACCCGCACCTTACAACCCGCACTGTTTC
GGGCCCCCTGCTGTACCCACATTTCATTACACCGCATCCAGCTTCGCAAC
AACAGCCCACCAAGCTCGAACCCCCCAAGAATGCCGCCTTCTCTTGGGAA
CTGCCAACCAATCTACCAAACAACAGCAAATTTTACACTGCTTGAACCGC
TCGCTGTCGATATCTCTTGCCTCTCGCCGTCGATTGTTCAACGGCGCAAC
CAGCAGCAACAGCAGCGTACCTTGTTGGCGCTCCCTTCGATGCCAATCGC
CACAATAGGCTTATCTGACTTTGCCGATCGTAGATTTCCGATGCGTAGCG
GCATGGGTATTATACGCGTTATACTTGTGAGAGCACTTTCGTGCCAAGTG
ATTCCACCCACACAACAATCACCAACCCGCACCTTACAACCCGCACTGTT
TCGGGCCCCCTGCTGTACCCACATTTCATTACACCGCATCCAGCTTCGCA
ACAACAGCCCACCAAGCTCGAACCCCCCAAGAATGCCGCCTTCTCTTGGG
AACTGCCAACCAATCTACCAAACAACAGCAAATTTTACACTGCTTGAACC
GCTCGCTGTCGATATCTCTTGCCTCTCGCCGTCGATTGTTCAACGGCGCA
ACCAGCAGCAACAGCAGCGTACCTTGTTGGCGCTCCCTTCGATGCCAATC
GCCACAATAGGCTTATCTGACTTTGCCGATCGTAGATTTCCGATGCGTAG
CGGC
back to top