mRNA_P-fluviatile_contig20.4232.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig20.4232.1
Unique NamemRNA_P-fluviatile_contig20.4232.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig20.4232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig20contigP-fluviatile_contig20:15039..15479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815891.9552608-UTR-P-fluviatile_contig20:15038..151701622815891.9552608-UTR-P-fluviatile_contig20:15038..15170Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 15039..15170 +
1693563661.734524-UTR-P-fluviatile_contig20:15038..151701693563661.734524-UTR-P-fluviatile_contig20:15038..15170Porterinema fluviatile SAG_2381UTRP-fluviatile_contig20 15039..15170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815891.9665303-CDS-P-fluviatile_contig20:15170..154791622815891.9665303-CDS-P-fluviatile_contig20:15170..15479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 15171..15479 +
1693563661.7438335-CDS-P-fluviatile_contig20:15170..154791693563661.7438335-CDS-P-fluviatile_contig20:15170..15479Porterinema fluviatile SAG_2381CDSP-fluviatile_contig20 15171..15479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig20.4232.1prot_P-fluviatile_contig20.4232.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig20 15171..15479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig20.4232.1

>prot_P-fluviatile_contig20.4232.1 ID=prot_P-fluviatile_contig20.4232.1|Name=mRNA_P-fluviatile_contig20.4232.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
MGIRSLRLWYTMFASIPCMHMGDLTLHVLISAAVGKKLPASSSHSFILSR
SGVRVSVDLSFPHKLPLGCGTPRRLLPTRSCGDLLLCDVCLQTARCLFAL
VHS
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mRNA from alignment at P-fluviatile_contig20:15039..15479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig20.4232.1 ID=mRNA_P-fluviatile_contig20.4232.1|Name=mRNA_P-fluviatile_contig20.4232.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=441bp|location=Sequence derived from alignment at P-fluviatile_contig20:15039..15479+ (Porterinema fluviatile SAG_2381)
CTCCAATATTTTTAGCAGCTCAAACACACACGCGGGCGCAAGCAACACGT
GTATCACTTGCCCCATCTTCAGCTTAGCTGGGGGCTTCGAGCCCCGATAA
GTGCTTCCAAAGCCCATCTGTAATGTGGATATATGGGTATCCGATCTCTG
CGCCTTTGGTATACGATGTTCGCCTCCATCCCATGTATGCATATGGGCGA
CTTGACGCTGCACGTTTTGATTTCAGCCGCCGTTGGAAAAAAACTGCCCG
CCTCTTCCTCACATTCCTTCATTCTGTCTCGATCGGGCGTGCGTGTCTCG
GTTGACCTTTCTTTCCCACACAAGCTTCCGCTGGGGTGTGGGACACCTCG
CCGGTTGCTGCCTACGAGATCGTGTGGAGATTTACTGCTGTGTGATGTGT
GTTTACAGACCGCGAGGTGTCTCTTCGCTCTCGTGCACTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig20:15039..15479+

>mRNA_P-fluviatile_contig20.4232.1 ID=mRNA_P-fluviatile_contig20.4232.1|Name=mRNA_P-fluviatile_contig20.4232.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig20:15039..15479+ (Porterinema fluviatile SAG_2381)
ATGGGTATCCGATCTCTGCGCCTTTGGTATACGATGTTCGCCTCCATCCC
ATGTATGCATATGGGCGACTTGACGCTGCACGTTTTGATTTCAGCCGCCG
TTGGAAAAAAACTGCCCGCCTCTTCCTCACATTCCTTCATTCTGTCTCGA
TCGGGCGTGCGTGTCTCGGTTGACCTTTCTTTCCCACACAAGCTTCCGCT
GGGGTGTGGGACACCTCGCCGGTTGCTGCCTACGAGATCGTGTGGAGATT
TACTGCTGTGTGATGTGTGTTTACAGACCGCGAGGTGTCTCTTCGCTCTC
GTGCACTCCATGGGTATCCGATCTCTGCGCCTTTGGTATACGATGTTCGC
CTCCATCCCATGTATGCATATGGGCGACTTGACGCTGCACGTTTTGATTT
CAGCCGCCGTTGGAAAAAAACTGCCCGCCTCTTCCTCACATTCCTTCATT
CTGTCTCGATCGGGCGTGCGTGTCTCGGTTGACCTTTCTTTCCCACACAA
GCTTCCGCTGGGGTGTGGGACACCTCGCCGGTTGCTGCCTACGAGATCGT
GTGGAGATTTACTGCTGTGTGATGTGTGTTTACAGACCGCGAGGTGTCTC
TTCGCTCTCGTGCACTCC
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