mRNA_P-fluviatile_contig1.310.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.310.1
Unique NamemRNA_P-fluviatile_contig1.310.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.310.1 vs. uniprot
Match: A0A6H5KRB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.570e-18
Identity = 68/152 (44.74%), Postives = 92/152 (60.53%), Query Frame = 2 
Query:   38 KNVHKGGSHPVPEDKHSHQPQRKKRLRPAAEAMKKRIVTS------------RLDDIRLILESAATNDELALKINGVKVELRAVEEAMDHGGPSYLGIVDKGELEKRKKVLERKCRLLEEERELVQALRVEAAEEE-RAAAPRTEIQVASSP 454
            KN H    H  P     H    KKRL P  E+ KKR+ T+            R+DD+RL+L+S  +++ELA K+  V +EL+AV+ A+   G +YLGIVDK ELEKR+ +L ++  +L EEREL Q LRVE  +E  RAAA R+E Q + SP
Sbjct:   23 KNAHNAHVHGKPSSSSKHPQYHKKRLHPPGESGKKRVATTPSHPPSSSSLSRRVDDMRLVLDSTPSDEELAKKVRDVVLELKAVDRALADEG-TYLGIVDKAELEKRRYILVKRRFVLREERELGQKLRVEVKKEXXRAAAERSERQASLSP 173
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BLAST of mRNA_P-fluviatile_contig1.310.1 vs. uniprot
Match: D8LLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN2_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.860e-6
Identity = 36/63 (57.14%), Postives = 46/63 (73.02%), Query Frame = 2 
Query:  206 ELALKINGVKVELRAVEEAMDHGGPSYLGIVDKGELEKRKKVLERKCRLLEEERELVQALRVE 394
            ELA K+    +EL+AV+ A+   G +YLGIVDK ELEKR+ +L R+  +L EERELVQ LRVE
Sbjct:   55 ELAKKVRDAVLELKAVDRALADEG-TYLGIVDKAELEKRRYILVRRRFVLREERELVQKLRVE 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRB0_9PHAE1.570e-1844.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLN2_ECTSI1.860e-657.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3823325..3825165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_005100.1
Exons3
Model size913
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.310.1prot_P-fluviatile_contig1.310.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3823511..3825146 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.3867636-UTR-P-fluviatile_contig1:3823324..38235101622815266.3867636-UTR-P-fluviatile_contig1:3823324..3823510Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3823325..3823510 -
1693561299.2930846-UTR-P-fluviatile_contig1:3823324..38235101693561299.2930846-UTR-P-fluviatile_contig1:3823324..3823510Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3823325..3823510 -
1622815266.4346511-UTR-P-fluviatile_contig1:3825146..38251651622815266.4346511-UTR-P-fluviatile_contig1:3825146..3825165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3825147..3825165 -
1693561300.9316688-UTR-P-fluviatile_contig1:3825146..38251651693561300.9316688-UTR-P-fluviatile_contig1:3825146..3825165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3825147..3825165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.3981261-CDS-P-fluviatile_contig1:3823510..38238361622815266.3981261-CDS-P-fluviatile_contig1:3823510..3823836Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3823511..3823836 -
1693561299.4783094-CDS-P-fluviatile_contig1:3823510..38238361693561299.4783094-CDS-P-fluviatile_contig1:3823510..3823836Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3823511..3823836 -
1622815266.4132895-CDS-P-fluviatile_contig1:3824405..38245021622815266.4132895-CDS-P-fluviatile_contig1:3824405..3824502Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3824406..3824502 -
1693561299.4967103-CDS-P-fluviatile_contig1:3824405..38245021693561299.4967103-CDS-P-fluviatile_contig1:3824405..3824502Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3824406..3824502 -
1622815266.4244404-CDS-P-fluviatile_contig1:3824861..38251461622815266.4244404-CDS-P-fluviatile_contig1:3824861..3825146Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3824862..3825146 -
1693561300.4781234-CDS-P-fluviatile_contig1:3824861..38251461693561300.4781234-CDS-P-fluviatile_contig1:3824861..3825146Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3824862..3825146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.310.1

>prot_P-fluviatile_contig1.310.1 ID=prot_P-fluviatile_contig1.310.1|Name=mRNA_P-fluviatile_contig1.310.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=236bp
MDTNVSKNVHKGGSHPVPEDKHSHQPQRKKRLRPAAEAMKKRIVTSRLDD
IRLILESAATNDELALKINGVKVELRAVEEAMDHGGPSYLGIVDKGELEK
RKKVLERKCRLLEEERELVQALRVEAAEEERAAAPRTEIQVASSPLQRRN
SGSKDKASAAAGARAGVAAPQSPPSIRAPAPAPSSPPAAMKGAYAFAFTP
PPGKRREADSSVGDFLKKNTALMGKKLAAAKADGD*
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mRNA from alignment at P-fluviatile_contig1:3823325..3825165-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.310.1 ID=mRNA_P-fluviatile_contig1.310.1|Name=mRNA_P-fluviatile_contig1.310.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1841bp|location=Sequence derived from alignment at P-fluviatile_contig1:3823325..3825165- (Porterinema fluviatile SAG_2381)
AAGCATTGACAATAATACCATGGACACAAACGTTAGCAAGAACGTGCACA
AAGGTGGGAGCCATCCTGTCCCTGAGGACAAACACAGCCACCAGCCGCAG
CGCAAGAAGAGGCTGCGCCCGGCCGCTGAGGCTATGAAGAAGAGAATCGT
TACGTCTCGCTTGGATGATATCCGGCTCATCCTCGAATCGGCCGCCACGA
ACGATGAGCTGGCGTTGAAAATCAATGGCGTCAAGGTCGAGCTACGGGCC
GTCGAAGAAGCTATGGATCATGGAGGCCCCTCGTACCTCGGTATCGTTGA
CAAGGTGGGGGTGATCGAGAGAATTGGCATATATGATAAAGGCTGTCCTT
CAGTTGATAAAGTGTCTGAAGGTTCATGGTAAAATGAGACTCTTTTTTAC
TCGTGTATGGTGTATCTTCAAGGCGGCGCTAACCTGCTGGCAGCCGCACG
CCTGCATGCATTATTTGTGGACTGTTCGGACTCCTGTTTCTCCTACAGGA
GTTCTCTTCCCCGGATTTTCAGTTGGCAGCTCCGCCCTTCTTTTTTGGCA
CTTGTAATCCCGCTGGTGCTGTGAAATTCCGCTTATGTGGACTCGCACGC
AGCGGCAACCAGCGGCCGAATGTTTGATATGCCAACGAAAAGCTCATGTG
CACTCTAAATCAGGGGGAACTCGAGAAGCGGAAGAAGGTTCTAGAGAGGA
AGTGCCGGCTGCTCGAGGAGGAAAGGGAGCTGGTGCAAGCTCTCCGCGTT
GAGGCTGCAGGTGGGTGAGGGGGGGTATGCGGCGAACAAGGAGGAAGGCA
CCTGTCTCGACGTGCTGGTTGTAAAACCGGGCTGCTTCGATAGAGCCAGG
CAATTGCTCAGAGGCAAAAGATCAAATGACTGCTGCTGCAGACACGGTAT
TGCGGTTTAGGTATCCGTTGGGGCCTAGACAACCATGGCACAGTATTGGG
CCCTCCAGCGCCTGCAAGTGCCCGTCGATTCAACCGACCCTATTCAGGGC
GACCGGCACTAGCGAGGGGTTTCGAGGCTCGCATGCTTAGCTTCCTATTG
AGCTCCGAGGACTTGGCCGGGATCAAGAAAACGGCCGATACGAATCGGCC
TCACAAAGCATGAAGTCGTACTTCGTATTCTTCTAGGCGCAACAGAAACC
AACCCTACAAGGAGTGAACGTTAGTCAACTTTCGCCACCCGTCGAAAAGC
AGGACCACTTGATCACGTTGGAATACCCCGGCCGCAAATTTGGGTCTGTA
GCATGGTGCCGTATTTTCCCCCACCACTGCTCCCGTGCCTTTGTGCCACG
ACATCGAATGCTCGGTTCCGGAAAAGCAGAAGAAGAGCGCGCTGCGGCTC
CGCGGACGGAAATCCAGGTAGCCTCCTCACCGTTACAGAGACGCAACAGC
GGCAGCAAAGATAAAGCCTCTGCCGCCGCGGGGGCAAGAGCAGGAGTGGC
CGCGCCGCAATCTCCGCCGTCGATCCGAGCACCAGCACCAGCACCGTCAT
CGCCACCAGCGGCGATGAAAGGAGCTTACGCGTTCGCGTTCACGCCGCCG
CCAGGAAAGCGGAGAGAAGCCGACAGCAGTGTCGGGGATTTCCTTAAGAA
AAACACGGCACTGATGGGGAAGAAGTTGGCCGCCGCCAAGGCCGACGGCG
ACTGACATGTTGGGGACAGTTGGAGGCGCATTTGAGAATCTAGTGCGTGG
CTAAGCCTCCTCGTCCGACGAGATCTAGGCAACCGGCTGACATTCGAAGT
ACCTTTGAATGATCACGTGTACGGTTTTATTGTGGATACAACCCGGAATC
AGTGTGCTCACTTCGTTTTCATCGTTTTCTCGTCACCACCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3823325..3825165-

>mRNA_P-fluviatile_contig1.310.1 ID=mRNA_P-fluviatile_contig1.310.1|Name=mRNA_P-fluviatile_contig1.310.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1416bp|location=Sequence derived from alignment at P-fluviatile_contig1:3823325..3825165- (Porterinema fluviatile SAG_2381)
ATGGACACAAACGTTAGCAAGAACGTGCACAAAGGTGGGAGCCATCCTGT
CCCTGAGGACAAACACAGCCACCAGCCGCAGCGCAAGAAGAGGCTGCGCC
CGGCCGCTGAGGCTATGAAGAAGAGAATCGTTACGTCTCGCTTGGATGAT
ATCCGGCTCATCCTCGAATCGGCCGCCACGAACGATGAGCTGGCGTTGAA
AATCAATGGCGTCAAGGTCGAGCTACGGGCCGTCGAAGAAGCTATGGATC
ATGGAGGCCCCTCGTACCTCGGTATCGTTGACAAGATGGACACAAACGTT
AGCAAGAACGTGCACAAAGGTGGGAGCCATCCTGTCCCTGAGGACAAACA
CAGCCACCAGCCGCAGCGCAAGAAGAGGCTGCGCCCGGCCGCTGAGGCTA
TGAAGAAGAGAATCGTTACGTCTCGCTTGGATGATATCCGGCTCATCCTC
GAATCGGCCGCCACGAACGATGAGCTGGCGTTGAAAATCAATGGCGTCAA
GGTCGAGCTACGGGCCGTCGAAGAAGCTATGGATCATGGAGGCCCCTCGT
ACCTCGGTATCGTTGACAAGGGGGAACTCGAGAAGCGGAAGAAGGTTCTA
GAGAGGAAGTGCCGGCTGCTCGAGGAGGAAAGGGAGCTGGTGCAAGCTCT
CCGCGTTGAGGCTGCAGGGGGAACTCGAGAAGCGGAAGAAGGTTCTAGAG
AGGAAGTGCCGGCTGCTCGAGGAGGAAAGGGAGCTGGTGCAAGCTCTCCG
CGTTGAGGCTGCAGAAGAAGAGCGCGCTGCGGCTCCGCGGACGGAAATCC
AGGTAGCCTCCTCACCGTTACAGAGACGCAACAGCGGCAGCAAAGATAAA
GCCTCTGCCGCCGCGGGGGCAAGAGCAGGAGTGGCCGCGCCGCAATCTCC
GCCGTCGATCCGAGCACCAGCACCAGCACCGTCATCGCCACCAGCGGCGA
TGAAAGGAGCTTACGCGTTCGCGTTCACGCCGCCGCCAGGAAAGCGGAGA
GAAGCCGACAGCAGTGTCGGGGATTTCCTTAAGAAAAACACGGCACTGAT
GGGGAAGAAGTTGGCCGCCGCCAAGGCCGACGGCGACTGAAAGAAGAGCG
CGCTGCGGCTCCGCGGACGGAAATCCAGGTAGCCTCCTCACCGTTACAGA
GACGCAACAGCGGCAGCAAAGATAAAGCCTCTGCCGCCGCGGGGGCAAGA
GCAGGAGTGGCCGCGCCGCAATCTCCGCCGTCGATCCGAGCACCAGCACC
AGCACCGTCATCGCCACCAGCGGCGATGAAAGGAGCTTACGCGTTCGCGT
TCACGCCGCCGCCAGGAAAGCGGAGAGAAGCCGACAGCAGTGTCGGGGAT
TTCCTTAAGAAAAACACGGCACTGATGGGGAAGAAGTTGGCCGCCGCCAA
GGCCGACGGCGACTGA
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