mRNA_P-fluviatile_contig2.3883.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3883.1
Unique NamemRNA_P-fluviatile_contig2.3883.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:1946240..1946688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size449
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3883.1prot_P-fluviatile_contig2.3883.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 1946373..1946684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.0355108-UTR-P-fluviatile_contig2:1946239..19463721622815820.0355108-UTR-P-fluviatile_contig2:1946239..1946372Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1946240..1946372 +
1693563428.3684254-UTR-P-fluviatile_contig2:1946239..19463721693563428.3684254-UTR-P-fluviatile_contig2:1946239..1946372Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1946240..1946372 +
1622815820.0607133-UTR-P-fluviatile_contig2:1946684..19466881622815820.0607133-UTR-P-fluviatile_contig2:1946684..1946688Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1946685..1946688 +
1693563428.392565-UTR-P-fluviatile_contig2:1946684..19466881693563428.392565-UTR-P-fluviatile_contig2:1946684..1946688Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1946685..1946688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.0493903-CDS-P-fluviatile_contig2:1946372..19466841622815820.0493903-CDS-P-fluviatile_contig2:1946372..1946684Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1946373..1946684 +
1693563428.3759341-CDS-P-fluviatile_contig2:1946372..19466841693563428.3759341-CDS-P-fluviatile_contig2:1946372..1946684Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1946373..1946684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3883.1

>prot_P-fluviatile_contig2.3883.1 ID=prot_P-fluviatile_contig2.3883.1|Name=mRNA_P-fluviatile_contig2.3883.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
MQPVAPPLHSASSLDIVCLLLHFCTQQVDIMCQRDAWSSSQCSHHGSADL
EPSFPTTERKHHMDTYGYLSGHDDGGISVEESRFSLKEVLFGILFGAKKK
MKI*
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mRNA from alignment at P-fluviatile_contig2:1946240..1946688+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3883.1 ID=mRNA_P-fluviatile_contig2.3883.1|Name=mRNA_P-fluviatile_contig2.3883.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=449bp|location=Sequence derived from alignment at P-fluviatile_contig2:1946240..1946688+ (Porterinema fluviatile SAG_2381)
ATGATTTCTGTCGTAGCGACAATCCCGAGCACGATGTGTGACGTTTGTTA
CGTATACGTAGACTTTATGCGGGTCGCGCAGGAGTGGTTTATCTTTCACA
TACAAAGTCCCCACAGTTCTCTCCACACACGGTATGCAGCCTGTTGCTCC
ACCTCTGCACTCAGCAAGTAGTTTAGACATCGTGTGTCTGTTGCTCCACT
TCTGCACTCAGCAAGTAGACATCATGTGTCAGCGAGACGCATGGTCAAGC
TCTCAGTGCTCACACCACGGTTCGGCTGATTTAGAGCCCAGCTTCCCAAC
GACCGAAAGGAAACATCATATGGATACATATGGATACCTCAGTGGGCACG
ACGATGGAGGGATATCTGTCGAAGAATCCCGATTCTCTTTGAAAGAAGTC
CTTTTTGGCATCTTGTTCGGGGCAAAAAAAAAGATGAAAATCTAACGGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:1946240..1946688+

>mRNA_P-fluviatile_contig2.3883.1 ID=mRNA_P-fluviatile_contig2.3883.1|Name=mRNA_P-fluviatile_contig2.3883.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig2:1946240..1946688+ (Porterinema fluviatile SAG_2381)
ATGCAGCCTGTTGCTCCACCTCTGCACTCAGCAAGTAGTTTAGACATCGT
GTGTCTGTTGCTCCACTTCTGCACTCAGCAAGTAGACATCATGTGTCAGC
GAGACGCATGGTCAAGCTCTCAGTGCTCACACCACGGTTCGGCTGATTTA
GAGCCCAGCTTCCCAACGACCGAAAGGAAACATCATATGGATACATATGG
ATACCTCAGTGGGCACGACGATGGAGGGATATCTGTCGAAGAATCCCGAT
TCTCTTTGAAAGAAGTCCTTTTTGGCATCTTGTTCGGGGCAAAAAAAAAG
ATGAAAATCTAAATGCAGCCTGTTGCTCCACCTCTGCACTCAGCAAGTAG
TTTAGACATCGTGTGTCTGTTGCTCCACTTCTGCACTCAGCAAGTAGACA
TCATGTGTCAGCGAGACGCATGGTCAAGCTCTCAGTGCTCACACCACGGT
TCGGCTGATTTAGAGCCCAGCTTCCCAACGACCGAAAGGAAACATCATAT
GGATACATATGGATACCTCAGTGGGCACGACGATGGAGGGATATCTGTCG
AAGAATCCCGATTCTCTTTGAAAGAAGTCCTTTTTGGCATCTTGTTCGGG
GCAAAAAAAAAGATGAAAATCTAA
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