mRNA_P-fluviatile_contig2.3828.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3828.1
Unique NamemRNA_P-fluviatile_contig2.3828.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:1504218..1504731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size333
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.7187066-CDS-P-fluviatile_contig2:1504217..15045501622815819.7187066-CDS-P-fluviatile_contig2:1504217..1504550Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1504218..1504550 +
1693563427.6451964-CDS-P-fluviatile_contig2:1504217..15045501693563427.6451964-CDS-P-fluviatile_contig2:1504217..1504550Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1504218..1504550 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.7313926-UTR-P-fluviatile_contig2:1504550..15047311622815819.7313926-UTR-P-fluviatile_contig2:1504550..1504731Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1504551..1504731 +
1693563427.653251-UTR-P-fluviatile_contig2:1504550..15047311693563427.653251-UTR-P-fluviatile_contig2:1504550..1504731Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1504551..1504731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3828.1prot_P-fluviatile_contig2.3828.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 1504218..1504550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3828.1

>prot_P-fluviatile_contig2.3828.1 ID=prot_P-fluviatile_contig2.3828.1|Name=mRNA_P-fluviatile_contig2.3828.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
PRLNPCHKHSHKSDRPCPRNRRKGSNPWVSRGQGPRRRYRCLRFPISRRR
WRATPSAGCPWRQRLQFVRSRWDTDARASSWCVGGKAGVISLGSSSFRKH
RSFLEAPGTC*
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mRNA from alignment at P-fluviatile_contig2:1504218..1504731+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3828.1 ID=mRNA_P-fluviatile_contig2.3828.1|Name=mRNA_P-fluviatile_contig2.3828.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=514bp|location=Sequence derived from alignment at P-fluviatile_contig2:1504218..1504731+ (Porterinema fluviatile SAG_2381)
CCCCGCCTCAACCCGTGCCACAAGCACAGCCACAAGTCGGACCGCCCGTG
CCCCCGAAACCGTCGAAAGGGTTCCAATCCCTGGGTCAGCAGGGGCCAGG
GGCCCCGCCGTCGATACCGATGCCTCCGGTTCCCGATCAGCAGGCGCAGA
TGGAGGGCAACCCCTTCGGCGGGATGTCCGTGGCGCCAGAGGCTGCAGTT
CGTTCGGAGCAGGTGGGACACGGACGCTAGGGCGTCGTCCTGGTGTGTCG
GTGGTAAGGCAGGTGTGATTTCGCTTGGGTCGTCATCCTTTCGGAAACAT
CGCTCCTTCCTTGAGGCACCGGGCACTTGTTGAAGGGGAGAAACGTTCAC
CTCGTCGCCGATCCCGATAGCCGGTGGCGTTTTCTGCATCGGCTCTCTCG
CTCCTTCTACTCTCTGCCATGGTTTTGGATATCCTGCGTGGATGCGGTTC
GCCGCGCAGCTCACAGCCGTTTTATTTCACCGCGATAGTTCCCCTTTCCT
ACCTCCTCCCCCCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:1504218..1504731+

>mRNA_P-fluviatile_contig2.3828.1 ID=mRNA_P-fluviatile_contig2.3828.1|Name=mRNA_P-fluviatile_contig2.3828.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig2:1504218..1504731+ (Porterinema fluviatile SAG_2381)
CCCCGCCTCAACCCGTGCCACAAGCACAGCCACAAGTCGGACCGCCCGTG
CCCCCGAAACCGTCGAAAGGGTTCCAATCCCTGGGTCAGCAGGGGCCAGG
GGCCCCGCCGTCGATACCGATGCCTCCGGTTCCCGATCAGCAGGCGCAGA
TGGAGGGCAACCCCTTCGGCGGGATGTCCGTGGCGCCAGAGGCTGCAGTT
CGTTCGGAGCAGGTGGGACACGGACGCTAGGGCGTCGTCCTGGTGTGTCG
GTGGTAAGGCAGGTGTGATTTCGCTTGGGTCGTCATCCTTTCGGAAACAT
CGCTCCTTCCTTGAGGCACCGGGCACTTGTTGACCCCGCCTCAACCCGTG
CCACAAGCACAGCCACAAGTCGGACCGCCCGTGCCCCCGAAACCGTCGAA
AGGGTTCCAATCCCTGGGTCAGCAGGGGCCAGGGGCCCCGCCGTCGATAC
CGATGCCTCCGGTTCCCGATCAGCAGGCGCAGATGGAGGGCAACCCCTTC
GGCGGGATGTCCGTGGCGCCAGAGGCTGCAGTTCGTTCGGAGCAGGTGGG
ACACGGACGCTAGGGCGTCGTCCTGGTGTGTCGGTGGTAAGGCAGGTGTG
ATTTCGCTTGGGTCGTCATCCTTTCGGAAACATCGCTCCTTCCTTGAGGC
ACCGGGCACTTGTTGA
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