mRNA_P-fluviatile_contig2.3754.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3754.1
Unique NamemRNA_P-fluviatile_contig2.3754.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:884539..884923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.4650126-CDS-P-fluviatile_contig2:884538..8848411622815819.4650126-CDS-P-fluviatile_contig2:884538..884841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 884539..884841 +
1693563427.389907-CDS-P-fluviatile_contig2:884538..8848411693563427.389907-CDS-P-fluviatile_contig2:884538..884841Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 884539..884841 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.4772303-UTR-P-fluviatile_contig2:884841..8849231622815819.4772303-UTR-P-fluviatile_contig2:884841..884923Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 884842..884923 +
1693563427.5311525-UTR-P-fluviatile_contig2:884841..8849231693563427.5311525-UTR-P-fluviatile_contig2:884841..884923Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 884842..884923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3754.1prot_P-fluviatile_contig2.3754.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 884539..884841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3754.1

>prot_P-fluviatile_contig2.3754.1 ID=prot_P-fluviatile_contig2.3754.1|Name=mRNA_P-fluviatile_contig2.3754.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
GRQCALAAGAIGTVKRDGLKGTSAGTRGCCSPHLQRCLKHGDAAVWLPAV
FCSLPPSKLGRWAACNRAIPNERSHQARELTYNAATRRRGSLLIVIAGDG
*
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mRNA from alignment at P-fluviatile_contig2:884539..884923+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3754.1 ID=mRNA_P-fluviatile_contig2.3754.1|Name=mRNA_P-fluviatile_contig2.3754.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=385bp|location=Sequence derived from alignment at P-fluviatile_contig2:884539..884923+ (Porterinema fluviatile SAG_2381)
GGGCGGCAGTGTGCTTTGGCAGCGGGGGCGATTGGTACCGTAAAACGCGA
TGGTTTGAAGGGCACGAGCGCTGGTACGAGAGGGTGCTGCTCTCCCCATC
TGCAAAGATGTCTCAAACACGGCGATGCGGCGGTGTGGCTCCCAGCTGTT
TTTTGTAGTCTCCCGCCGTCGAAGCTCGGGAGGTGGGCAGCGTGCAATCG
AGCGATTCCAAACGAGCGATCGCATCAAGCAAGAGAGCTGACATACAACG
CCGCAACGCGCCGGCGTGGATCTCTGCTGATTGTCATAGCGGGAGATGGG
TAGCGAGCAATTGGTCGCTTTCAAAGGAGCAATCAGATCACGAAACCACA
GGGCACGCTACGGTAGCTTCTCTCGCCTGTCGTAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:884539..884923+

>mRNA_P-fluviatile_contig2.3754.1 ID=mRNA_P-fluviatile_contig2.3754.1|Name=mRNA_P-fluviatile_contig2.3754.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig2:884539..884923+ (Porterinema fluviatile SAG_2381)
GGGCGGCAGTGTGCTTTGGCAGCGGGGGCGATTGGTACCGTAAAACGCGA
TGGTTTGAAGGGCACGAGCGCTGGTACGAGAGGGTGCTGCTCTCCCCATC
TGCAAAGATGTCTCAAACACGGCGATGCGGCGGTGTGGCTCCCAGCTGTT
TTTTGTAGTCTCCCGCCGTCGAAGCTCGGGAGGTGGGCAGCGTGCAATCG
AGCGATTCCAAACGAGCGATCGCATCAAGCAAGAGAGCTGACATACAACG
CCGCAACGCGCCGGCGTGGATCTCTGCTGATTGTCATAGCGGGAGATGGG
TAGGGGCGGCAGTGTGCTTTGGCAGCGGGGGCGATTGGTACCGTAAAACG
CGATGGTTTGAAGGGCACGAGCGCTGGTACGAGAGGGTGCTGCTCTCCCC
ATCTGCAAAGATGTCTCAAACACGGCGATGCGGCGGTGTGGCTCCCAGCT
GTTTTTTGTAGTCTCCCGCCGTCGAAGCTCGGGAGGTGGGCAGCGTGCAA
TCGAGCGATTCCAAACGAGCGATCGCATCAAGCAAGAGAGCTGACATACA
ACGCCGCAACGCGCCGGCGTGGATCTCTGCTGATTGTCATAGCGGGAGAT
GGGTAG
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