mRNA_P-fluviatile_contig1.292.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.292.1
Unique NamemRNA_P-fluviatile_contig1.292.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 9.450e-77
Identity = 171/217 (78.80%), Postives = 178/217 (82.03%), Query Frame = 1
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATKGFYQGMVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLYMAVYNGHLEVVRELVHWYGTDRCTCDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGS +  +ATTDIDRRCGDTN TPLMVASVIGSS VV++LLRQGASVSVADSDGYTALHH+VYH+HLAVS  LIEAG DL ARPG                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     NPLLSAYGSLPL  AVYNGHL+VV ELVHWYGTDRCT DGG LALATAASRKHVDIVTFLCDAGV
Sbjct:    1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRANANPLLSAYGSLPLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGV 217          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 3.460e-70
Identity = 172/217 (79.26%), Postives = 175/217 (80.65%), Query Frame = 1
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATKGFYQGMVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLYMAVYNGHLEVVRELVHWYGTDRCTCDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDRRCG TNQTPLMVASVIGSS VVR+LLRQGASVSVADSDGYTALHHAVYHKHLAVSK                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NPLLSAYGSLPL MAVY+GHLEVVRELVHWYGTDRCT DGGALALATAASRKHVDIV FLC+AGV
Sbjct:  422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANANPLLSAYGSLPLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGV 638          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 8.840e-69
Identity = 171/209 (81.82%), Postives = 175/209 (83.73%), Query Frame = 1
Query:   25 SGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATKGFYQGMVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLYMAVYNGHLEVVRELVHWYGTDRCTCDGGALALATAASRKHVDIVTFLCDAGV 651
            SGS +  IATTDIDRRCGDTNQTPLMVASVIGSS VVR+LLRQGASVS+ADSDGY ALHHAVYHKHLAVSKDLIEAG DL ARPGGIDTPLHVAATKGF Q M  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSA                   ELV+WYGTD CT DGGALALATAASR  VDIVTFLCDAGV
Sbjct:  399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPLHVAATKGFCQEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSADXXXXXXXXXXXXXXXXXXELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGV 607          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.010e-60
Identity = 118/179 (65.92%), Postives = 121/179 (67.60%), Query Frame = 1
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATKGFYQGMVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLYMAVYNGHLEVVREL 537
            MPSTLSKASGS DPTIATT IDR CGDTNQTPLMVASVIGSS VVR+LLRQGASVSVADSDG TALHH+VYH HLAVSKDLIEAG DL AR GG DTPLHVAATKGF QGM +                                       NPLLSA GSLPLYMAVYN  L   R L
Sbjct:    1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLMDSRLDDGATPLFLAASDGRLEAVRVLLRANA------NPLLSACGSLPLYMAVYNRPLVRNRSL 173          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 4.830e-59
Identity = 162/218 (74.31%), Postives = 164/218 (75.23%), Query Frame = 1
Query:    1 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATKGFYQGMVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLLSAYGSLPLY-MAVYNGHLEVVRELVHWYGTDRCTCDGGALALATAASRKHVDIVTFLCDAGV 651
            MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIG S VVR+LLRQGASVSVADSDGYTALHHAVYHKHLAVSK                                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LSAYGSLPLY M          RELV+WYG DRCT DGGALAL TAASRKHVDIVTFL DAGV
Sbjct:    7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSAYGSLPLYIMXXXXXXXXXXRELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGV 224          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: Q4TDF9_TETNG (Chromosome undetermined SCAF6289, whole genome shotgun sequence (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4TDF9_TETNG)

HSP 1 Score: 59.3 bits (142), Expect = 2.230e-7
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   61 IDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATK 315
            +D+  GD + TPL  A   G   +V  LLR GA  S+AD +GY ALH A+  +H+A++  L+  G D+  +     TP+ +AA K
Sbjct:  105 VDQLGGDLSSTPLHWAIRQGHLSMVIQLLRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQDVDEQDANGQTPVMLAALK 189          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: UPI001C049DCF (putative palmitoyltransferase ZDHHC13 isoform X2 n=2 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C049DCF)

HSP 1 Score: 59.7 bits (143), Expect = 7.340e-7
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   61 IDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATK 315
            +D+  GD N TPL  A   G   +V  LLR GA +S+AD +GY ALH A+  +H+AV+  L+  G ++        TPL +AA K
Sbjct:  132 VDQLGGDLNSTPLHWAIRQGHLPMVIQLLRYGADLSLADGEGYHALHLAILFQHMAVAAYLMAKGQEVDGPDSNGQTPLMLAAQK 216          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: Q4SHA5_TETNG ((spotted green pufferfish) hypothetical protein (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SHA5_TETNG)

HSP 1 Score: 59.3 bits (142), Expect = 9.730e-7
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   61 IDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATK 315
            +D+  GD + TPL  A   G   +V  LLR GA  S+AD +GY ALH A+  +H+A++  L+  G D+  +     TP+ +AA K
Sbjct:   78 VDQLGGDLSSTPLHWAIRQGHLSMVIQLLRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQDVDEQDANGQTPVMLAALK 162          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: H3C8I4_TETNG (Palmitoyltransferase n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C8I4_TETNG)

HSP 1 Score: 59.3 bits (142), Expect = 9.760e-7
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   61 IDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATK 315
            +D+  GD + TPL  A   G   +V  LLR GA  S+AD +GY ALH A+  +H+A++  L+  G D+  +     TP+ +AA K
Sbjct:  113 VDQLGGDLSSTPLHWAIRQGHLSMVIQLLRYGADPSIADGEGYRALHLAILFQHMAIAAYLMAKGQDVDEQDANGQTPVMLAALK 197          
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Match: A0A669DLX3_ORENI (Palmitoyltransferase n=5 Tax=Oreochromis TaxID=8139 RepID=A0A669DLX3_ORENI)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-6
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   61 IDRRCGDTNQTPLMVASVIGSSCVVRNLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLHVAATK 315
            +D+  GD N TPL  A   G   +V  L+R GA  SVAD +GY ALH A+  +H+A++  LI  G ++        TPL +AA K
Sbjct:   64 VDQLGGDLNSTPLHWAIRQGHLPMVIQLMRYGADPSVADGEGYRALHLAILFQHMAIAAYLIAKGQEVDGPDCNGQTPLMLAAQK 148          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHQ8_9PHAE9.450e-7778.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE3.460e-7079.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE8.840e-6981.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI1.010e-6065.92EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L5L0_9PHAE4.830e-5974.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
Q4TDF9_TETNG2.230e-738.82Chromosome undetermined SCAF6289, whole genome sho... [more]
UPI001C049DCF7.340e-741.18putative palmitoyltransferase ZDHHC13 isoform X2 n... [more]
Q4SHA5_TETNG9.730e-738.82(spotted green pufferfish) hypothetical protein (F... [more]
H3C8I4_TETNG9.760e-738.82Palmitoyltransferase n=1 Tax=Tetraodon nigroviridi... [more]
A0A669DLX3_ORENI1.220e-641.18Palmitoyltransferase n=5 Tax=Oreochromis TaxID=813... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3609610..3610260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue3.2e-49
Seed eggNOG ortholog2880.D8LH66
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size651
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815317.438935-CDS-P-fluviatile_contig1:3609609..36102601622815317.438935-CDS-P-fluviatile_contig1:3609609..3610260Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3609610..3610260 +
1693561484.8987806-CDS-P-fluviatile_contig1:3609609..36102601693561484.8987806-CDS-P-fluviatile_contig1:3609609..3610260Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3609610..3610260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.292.1prot_P-fluviatile_contig1.292.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3609610..3610260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.292.1

>prot_P-fluviatile_contig1.292.1 ID=prot_P-fluviatile_contig1.292.1|Name=mRNA_P-fluviatile_contig1.292.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=217bp
MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGSSCVVRNLLR
QGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGVDLGARPGGIDTPLH
VAATKGFYQGMVVLIDAGANVDSRLDDGATPLFFAASDGWLEGVKILLRA
NANPLLSAYGSLPLYMAVYNGHLEVVRELVHWYGTDRCTCDGGALALATA
ASRKHVDIVTFLCDAGV
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mRNA from alignment at P-fluviatile_contig1:3609610..3610260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.292.1 ID=mRNA_P-fluviatile_contig1.292.1|Name=mRNA_P-fluviatile_contig1.292.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=651bp|location=Sequence derived from alignment at P-fluviatile_contig1:3609610..3610260+ (Porterinema fluviatile SAG_2381)
ATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA TGGTGGCCTCCGTCATTGGTTCCTCCTGCGTTGTCAGAAACCTTCTGCGG CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA CCACGCGGTCTATCACAAACACCTGGCCGTGAGCAAAGACCTGATCGAGG CGGGAGTGGACCTTGGAGCGAGGCCCGGTGGCATAGATACACCACTTCAC GTGGCCGCGACGAAAGGGTTTTACCAGGGAATGGTGGTGCTGATCGACGC AGGCGCGAATGTGGACAGCAGGCTCGACGACGGAGCAACACCTCTATTCT TCGCGGCAAGCGACGGGTGGCTGGAAGGGGTGAAAATTCTCCTTCGGGCG AACGCGAATCCGCTCTTGTCAGCGTACGGCAGTCTCCCGTTATATATGGC GGTTTACAATGGACATCTGGAAGTGGTCCGCGAGCTCGTGCATTGGTACG GAACCGACCGCTGTACCTGTGACGGCGGCGCACTGGCTCTCGCAACGGCC GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT G
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:3609610..3610260+

>mRNA_P-fluviatile_contig1.292.1 ID=mRNA_P-fluviatile_contig1.292.1|Name=mRNA_P-fluviatile_contig1.292.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1302bp|location=Sequence derived from alignment at P-fluviatile_contig1:3609610..3610260+ (Porterinema fluviatile SAG_2381)
ATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTGC
TACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTGA
TGGTGGCCTCCGTCATTGGTTCCTCCTGCGTTGTCAGAAACCTTCTGCGG
CAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGCA
CCACGCGGTCTATCACAAACACCTGGCCGTGAGCAAAGACCTGATCGAGG
CGGGAGTGGACCTTGGAGCGAGGCCCGGTGGCATAGATACACCACTTCAC
GTGGCCGCGACGAAAGGGTTTTACCAGGGAATGGTGGTGCTGATCGACGC
AGGCGCGAATGTGGACAGCAGGCTCGACGACGGAGCAACACCTCTATTCT
TCGCGGCAAGCGACGGGTGGCTGGAAGGGGTGAAAATTCTCCTTCGGGCG
AACGCGAATCCGCTCTTGTCAGCGTACGGCAGTCTCCCGTTATATATGGC
GGTTTACAATGGACATCTGGAAGTGGTCCGCGAGCTCGTGCATTGGTACG
GAACCGACCGCTGTACCTGTGACGGCGGCGCACTGGCTCTCGCAACGGCC
GCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTGT
GATGCCATCAACTCTGAGCAAAGCCAGCGGTTCCGCCGATCCTACCATTG
CTACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGACACCGCTG
ATGGTGGCCTCCGTCATTGGTTCCTCCTGCGTTGTCAGAAACCTTCTGCG
GCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATACTGCTCTGC
ACCACGCGGTCTATCACAAACACCTGGCCGTGAGCAAAGACCTGATCGAG
GCGGGAGTGGACCTTGGAGCGAGGCCCGGTGGCATAGATACACCACTTCA
CGTGGCCGCGACGAAAGGGTTTTACCAGGGAATGGTGGTGCTGATCGACG
CAGGCGCGAATGTGGACAGCAGGCTCGACGACGGAGCAACACCTCTATTC
TTCGCGGCAAGCGACGGGTGGCTGGAAGGGGTGAAAATTCTCCTTCGGGC
GAACGCGAATCCGCTCTTGTCAGCGTACGGCAGTCTCCCGTTATATATGG
CGGTTTACAATGGACATCTGGAAGTGGTCCGCGAGCTCGTGCATTGGTAC
GGAACCGACCGCTGTACCTGTGACGGCGGCGCACTGGCTCTCGCAACGGC
CGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGTGCGATGCCGGTG
TG
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