mRNA_P-fluviatile_contig19.3481.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig19.3481.1
Unique Name	mRNA_P-fluviatile_contig19.3481.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig19.3481.1 vs. uniprot
Match: D7FWR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR5_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 5.060e-63
Identity = 149/273 (54.58%), Postives = 172/273 (63.00%), Query Frame = 1

Query:    1 MHVASPGLPEPALRHLFYRVVTAAAQGRPSS--ARTAGGVEPTTXXXXXXXXXXXXXXVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLASAPRLARAVVEFPLACEGLGTLIEATSTDQGARNLLKQVEYQAKHALEETEKVWLIVRNVE--QLGRFHGAGAEFAGLLPPAEIAAVEARASQLKSFMTNAEMSRRSPLDISKLDVWKLWISRRMLVAETTLLWAYGGVGPAVRAQDAIRQGRRVRIKRTWRALQRAWREKLVSRPGEEDLE 807
            MHVASPGLPE ALRHLF++  T  A  RPSS  A  AGG           XXXXXXXX                        XXXX  +  SA  LARA+  FPLACEGL  L+ +T+T+  AR+LLKQV +QAK ALEETEKV   +R  +    G+  G        +P AEI+AVEAR SQL++FM NA+ SR      S LDV KLWISRRMLVAETTLL AYGGVGP  RAQDAIRQGRRVR++R +RA + AWRE L+SRP EE LE
Sbjct:    1 MHVASPGLPEAALRHLFFQAATTGAP-RPSSLPAARAGGDGRGQTTAPATXXXXXXXXXRTSNNRSNAGRSGSFRQSGKSDGXXXXDGETTSASGLARAIAGFPLACEGLAPLVASTATELSARSLLKQVAHQAKEALEETEKVVASIREAQGTPAGQ-RGXXXXXXXFVPEAEISAVEARTSQLRAFMINADTSR------SVLDVSKLWISRRMLVAETTLLRAYGGVGPTARAQDAIRQGRRVRLRRIFRAFETAWRENLMSRPPEETLE 265

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig19.3481.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig19.3481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FWR5_ECTSI	5.060e-63	54.58	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig19	contig	P-fluviatile_contig19:955800..958633 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-21_004270.1
Exons	4
Model size	813
Cds size	813
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig19.3481.1	prot_P-fluviatile_contig19.3481.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig19 955800..958633 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815796.7694418-CDS-P-fluviatile_contig19:955799..955878	1622815796.7694418-CDS-P-fluviatile_contig19:955799..955878	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig19 955800..955878 -
1693563331.1790721-CDS-P-fluviatile_contig19:955799..955878	1693563331.1790721-CDS-P-fluviatile_contig19:955799..955878	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig19 955800..955878 -
1622815796.7805176-CDS-P-fluviatile_contig19:956696..956855	1622815796.7805176-CDS-P-fluviatile_contig19:956696..956855	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig19 956697..956855 -
1693563331.1871786-CDS-P-fluviatile_contig19:956696..956855	1693563331.1871786-CDS-P-fluviatile_contig19:956696..956855	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig19 956697..956855 -
1622815796.796975-CDS-P-fluviatile_contig19:957334..957435	1622815796.796975-CDS-P-fluviatile_contig19:957334..957435	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig19 957335..957435 -
1693563331.1954844-CDS-P-fluviatile_contig19:957334..957435	1693563331.1954844-CDS-P-fluviatile_contig19:957334..957435	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig19 957335..957435 -
1622815796.8090708-CDS-P-fluviatile_contig19:958159..958633	1622815796.8090708-CDS-P-fluviatile_contig19:958159..958633	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig19 958160..958633 -
1693563331.204997-CDS-P-fluviatile_contig19:958159..958633	1693563331.204997-CDS-P-fluviatile_contig19:958159..958633	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig19 958160..958633 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig19:955800..958633-
coding sequence from alignment at P-fluviatile_contig19:955800..958633-

protein sequence of mRNA_P-fluviatile_contig19.3481.1

>prot_P-fluviatile_contig19.3481.1 ID=prot_P-fluviatile_contig19.3481.1|Name=mRNA_P-fluviatile_contig19.3481.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=271bp
MHVASPGLPEPALRHLFYRVVTAAAQGRPSSARTAGGVEPTTTTTTTTSA
PRERSKVGAWGAGEGGGGNAGAGSSSGGGGGRGGDGDLASAPRLARAVVE
FPLACEGLGTLIEATSTDQGARNLLKQVEYQAKHALEETEKVWLIVRNVE
QLGRFHGAGAEFAGLLPPAEIAAVEARASQLKSFMTNAEMSRRSPLDISK
LDVWKLWISRRMLVAETTLLWAYGGVGPAVRAQDAIRQGRRVRIKRTWRA
LQRAWREKLVSRPGEEDLEG*

mRNA from alignment at P-fluviatile_contig19:955800..958633-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig19.3481.1 ID=mRNA_P-fluviatile_contig19.3481.1|Name=mRNA_P-fluviatile_contig19.3481.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2834bp|location=Sequence derived from alignment at P-fluviatile_contig19:955800..958633- (Porterinema fluviatile SAG_2381)
ATGCACGTCGCAAGCCCAGGTCTTCCGGAGCCGGCCCTTCGCCATCTTTT
TTACCGAGTGGTCACAGCTGCTGCGCAAGGTCGCCCTTCGTCAGCTCGTA
CGGCGGGAGGGGTAGAACCCACCACCACCACTACCACGACCACCTCCGCT
CCGCGAGAGCGCAGCAAGGTCGGTGCCTGGGGCGCTGGCGAAGGAGGCGG
CGGCAATGCAGGCGCTGGCAGCAGCAGCGGCGGCGGCGGCGGTAGAGGGG
GGGACGGGGACTTAGCGTCGGCGCCCAGGCTAGCACGGGCGGTGGTAGAA
TTTCCGCTGGCTTGCGAGGGGCTGGGTACTCTCATCGAAGCCACATCCAC
GGACCAGGGGGCGAGGAACCTGCTGAAGCAGGTCGAATACCAGGCAAAGC
ATGCGCTGGAGGAGACGGAGAAGGTTTGGCTCATAGTCAGGAATGTTGAG
CAACTCGGGAGATTTCACGGTGCCGTCTGCAAACAAGAAAGACTATGACG
TGGGTGAAGACGCGGAGATGAGTGAAGGGGGGTGGGACGAGAAGCGAAAC
AACGGCGGTTACTGGGCATGCTGAGGAAATTTCGCGTTTGATGTGTGTCC
GCTTGCCCGACAACGATGTGCGCCACTACACAACACAAGCGCGCGATCAC
CGTCTCTGCTTTCGGTTAGCCCCGTTCACGTTCACTCCTCTCCCCCACTC
TTTGGAGAATCGTAATTTCATTTGTCACCTCGGTGTCATTCGACGACATT
ATACATCAGCGGTTGGTCCCACCTGCCTGCGCTTTGTTTCATCACTAATC
ACATTTTCTCGGGCTTGGACCATGTACACGTGCCTTAAGCCGAACGTACA
CCTGAGACACCACATCAGTACTACACGCCCGCCGCCCGATTCCAAGCGTG
TCCTCTCCTCCTCGGACGAGGAGACCAATCAATCCTAGATGATCGCCTCC
GCCCCCCCACAACTAGAACTCAAAAAGCAGGGCTCCATCGTAAAAAGATC
TGTGTGACAGAGGCCAGAAACTCCTTCCTACACAACCTGCTCCAACCCCC
ACCTGCCCCCGGCCAGCTTCGGTGTGTTGAAACGTCATATTGCTTCCGGA
ATGGTATCTCAACCTGAAACGATCGTATGTTCGTTTGGAATCGAACGACT
TAATGAACGACTTAACCCACGCCCCATAAGGTTCTCGGGTCGATTAAGGG
GGCCGAGTTCGCGGGTCTTCTCCCGCCAGCTGAAATTGCGGCGGTGGAGG
CACGGGCTAGCCAGCTCAAATCCTTCATGACTAACGCTGAGATGTCACGG
TGAGCAGGACCAAAGGGCAAACGTCAGATCGGGAGAACAAGCATATTCAC
CGCCCGCGTTTGGTCGACTCATGCCGCCGTAGAATGTTGCATACCTCATG
ATTCTCCGGCAAAAATTCTCCGGCGTATTCTTTTTAAATCAACGTGCCTT
TGTTCACCCAAGTGAAGGCGTCTGGAGACCAGTGTGATCCACTACGGTGT
TTGATACATGACGTAGGGTGCCATGAGGGATACATGATATGCCTGACATC
ACGTGCGCGCGAGCGAGGGTCACGAACTCGAGTGGTCGAGTGAATGCCGC
GTGGGGGGTGGTTCACCGTGCCCACACTCGACTCCCGCTGAGAAACGGAC
ATCAAATGACGTGCATCCTGATGCGTGCCGGGGCGTGAATTGATATCTGC
CTCAAGCCTGCCATTCTGGCGCACCATCGTGCTGCCGCCGTGTGTGTGCC
AAACGCATGACAACACGCTCGGGTCGAGTAGGAGCCCGCTCGACATCTCG
AAGCTCGACGTGTGGAAGCTGTGGATCAGCCGCCGGATGCTCGTCGCAGA
AACTACGCTCTTGTGGGCCTACGGGGGGGTCGGCCCGGCGGTGCGAGCGC
AGGACGCGATACGGCAGGGCCGCAGAGTTCGCATCAAGTGAGAGCCGCAA
CATTCACATCCTAAGCCTCTTCGTTACGTCAAGAATCCAATTGCGCACCC
CCACAGCCAAATAAACCATAGTTTGCCGCGCCCTTCCCTTCTTTTTCGGA
GCAAGCGGGCCCCGTGGAATCAGGCTGGCGGAACGCGCGGCCCAATGTAA
TGCGACGGGCGAGTTCGTCTTGATCTTCAAGGAAATATTCACAATTTCAT
ATCATTTCCGAGTAGGACTAGCCTGAGCGCGCTTTTGCGGCCTGACGTTT
GACGGTTCTTTTTTCCACCCTCGGCCTCAAGTCTTCCAACACAAGGCTTC
TGAAGAGCGATACTGCCTTCGTCTCGCGAACACCGTGCCGAACTCGACGA
TACACGTTGGTCTAAAGAAGCTCGGGCGAGGCAGAGTGTGGAGGCACTAG
TCTTCATCGTCTCCGGCGAGACCCGCGCGTTCCTTGTCATTTCCCCAAGC
GTGGCCCGAGGCCCAGATACCTGGAACAATGTAACGATCGAGAACCCAAG
AAGGCGTCTCGGCGATGGTCTTGAGGTCAGGAATTATCTCATCAACTGCA
CTCTTGTGTGCACACCAGCGTACCCCATCAAGACAAACGTGAGGCCGATG
GTTCGATCGCAAAGGCCGAGCGATGTACGATCACCCTTCCCCCGGCATTA
CCCTCCATTCTGACCGGCGATTACCTCGTTCACCACCGCCGCAGTGTATT
TTTTTGGATCGCATCGGGTAGCCTCTGAATCAATCCGGCTTTGTCACGTC
TTGGCCTGTGCTCTCCATCCTTCTGTCGGCCTGTCGATTTCGTGGCGTGC
GCCAGGCGGACTTGGCGGGCGTTGCAGAGGGCGTGGCGGGAGAAGCTTGT
TTCACGGCCTGGTGAGGAAGACCTTGAGGGATGA

Coding sequence (CDS) from alignment at P-fluviatile_contig19:955800..958633-

>mRNA_P-fluviatile_contig19.3481.1 ID=mRNA_P-fluviatile_contig19.3481.1|Name=mRNA_P-fluviatile_contig19.3481.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1626bp|location=Sequence derived from alignment at P-fluviatile_contig19:955800..958633- (Porterinema fluviatile SAG_2381)
ATGCACGTCGCAAGCCCAGGTCTTCCGGAGCCGGCCCTTCGCCATCTTTT
TTACCGAGTGGTCACAGCTGCTGCGCAAGGTCGCCCTTCGTCAGCTCGTA
CGGCGGGAGGGGTAGAACCCACCACCACCACTACCACGACCACCTCCGCT
CCGCGAGAGCGCAGCAAGGTCGGTGCCTGGGGCGCTGGCGAAGGAGGCGG
CGGCAATGCAGGCGCTGGCAGCAGCAGCGGCGGCGGCGGCGGTAGAGGGG
GGGACGGGGACTTAGCGTCGGCGCCCAGGCTAGCACGGGCGGTGGTAGAA
TTTCCGCTGGCTTGCGAGGGGCTGGGTACTCTCATCGAAGCCACATCCAC
GGACCAGGGGGCGAGGAACCTGCTGAAGCAGGTCGAATACCAGGCAAAGC
ATGCGCTGGAGGAGACGGAGAAGGTTTGGCTCATAGTCAGGAATGTTGAG
CAACTCGGGAGATTTCACGGTGCCATGCACGTCGCAAGCCCAGGTCTTCC
GGAGCCGGCCCTTCGCCATCTTTTTTACCGAGTGGTCACAGCTGCTGCGC
AAGGTCGCCCTTCGTCAGCTCGTACGGCGGGAGGGGTAGAACCCACCACC
ACCACTACCACGACCACCTCCGCTCCGCGAGAGCGCAGCAAGGTCGGTGC
CTGGGGCGCTGGCGAAGGAGGCGGCGGCAATGCAGGCGCTGGCAGCAGCA
GCGGCGGCGGCGGCGGTAGAGGGGGGGACGGGGACTTAGCGTCGGCGCCC
AGGCTAGCACGGGCGGTGGTAGAATTTCCGCTGGCTTGCGAGGGGCTGGG
TACTCTCATCGAAGCCACATCCACGGACCAGGGGGCGAGGAACCTGCTGA
AGCAGGTCGAATACCAGGCAAAGCATGCGCTGGAGGAGACGGAGAAGGTT
TGGCTCATAGTCAGGAATGTTGAGCAACTCGGGAGATTTCACGGTGCCGG
GGCCGAGTTCGCGGGTCTTCTCCCGCCAGCTGAAATTGCGGCGGTGGAGG
CACGGGCTAGCCAGCTCAAATCCTTCATGACTAACGCTGAGATGTCACGG
GGGCCGAGTTCGCGGGTCTTCTCCCGCCAGCTGAAATTGCGGCGGTGGAG
GCACGGGCTAGCCAGCTCAAATCCTTCATGACTAACGCTGAGATGTCACG
TAGGAGCCCGCTCGACATCTCGAAGCTCGACGTGTGGAAGCTGTGGATCA
GCCGCCGGATGCTCGTCGCAGAAACTACGCTCTTGTGGGCCTACGGGGGG
GTCGGCCCGGCGGTGCGAGCGCAGGACGCGATACGGCAGGGCCGCAGAGT
TCGCATCAATAGGAGCCCGCTCGACATCTCGAAGCTCGACGTGTGGAAGC
TGTGGATCAGCCGCCGGATGCTCGTCGCAGAAACTACGCTCTTGTGGGCC
TACGGGGGGGTCGGCCCGGCGGTGCGAGCGCAGGACGCGATACGGCAGGG
CCGCAGAGTTCGCATCAAGCGGACTTGGCGGGCGTTGCAGAGGGCGTGGC
GGGAGAAGCTTGTTTCACGGCCTGGTGAGGAAGACCTTGAGGGATGAGCG
GACTTGGCGGGCGTTGCAGAGGGCGTGGCGGGAGAAGCTTGTTTCACGGC
CTGGTGAGGAAGACCTTGAGGGATGA