mRNA_P-fluviatile_contig19.3453.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig19.3453.1
Unique NamemRNA_P-fluviatile_contig19.3453.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5JIP1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.690e-30
Identity = 62/113 (54.87%), Postives = 78/113 (69.03%), Query Frame = 3 
Query:   72 FG*WRAGKWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQRRREGRTVVLVPRLRDKNSAENVRHQLRGYFDLMQAAMEHERCRTYMKE 410
            F   RAG+W + VH G+HTLGI+STQR ES N AFKK+V + GDL+DLDRAI+ KV D  I+ +RR EG     VP  R K+ AE ++ ++RGYF  + AAM HERC T  KE
Sbjct:  105 FSPGRAGRWAAFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVSDGKIKAERRSEGGNTPRVPISRHKSPAEVMKEKIRGYFSFIPAAMAHERCSTNAKE 217
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5JDT4_9PHAE (MULE domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.860e-29
Identity = 66/113 (58.41%), Postives = 79/113 (69.91%), Query Frame = 3 
Query:   72 FG*WRAGKWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQRRREGRTVVLVPRLRDKNSAENVRHQLRGYFDLMQAAMEHERCRTYMKE 410
            F   RAGKW S VH G+HTLGI+STQR E TN A KK+V + GDL DL+RA+L KVQDD+IRTQRR E      V   R+ + AENV+  LRGYF  + AA+ HERC T+ KE
Sbjct:  281 FNPGRAGKWASFVHPGLHTLGIASTQRVEGTNCAVKKLVTRTGDLADLERALLGKVQDDAIRTQRRSEVGNTKRVSLSRNMSPAENVKQNLRGYFAFITAALTHERCSTHAKE 393
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5KQ14_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ14_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.110e-22
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 3 
Query:   18 PQALVCGAVRHPAGFRPSFG*WRAGKWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQRRREGRTVVLVPRLRDKNSAENVRHQLRGYFDLMQAAMEHERCRTYMKE 410
            P+ L   +  H       FG  R  KW SCVH G+H LGI+STQR E+T  A K +V + G++ DL+RA+L+KVQDD+I+TQ R +G  V  VP +R  +  E+V+     +F  +  AMEHERC  + KE
Sbjct:  165 PRLLPQESAMHKYMEGTIFGAGRVEKWASCVHPGLHKLGIASTQRCEATFTALKLVVTRNGNMVDLNRALLSKVQDDAIKTQSRNKGGAVTRVP-VRKVSPQESVKASFLRHFSFVFEAMEHERCSRHAKE 294
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: D7G8C7_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.560e-20
Identity = 60/129 (46.51%), Postives = 79/129 (61.24%), Query Frame = 3 
Query:   27 LVCGAVRHPAGF-RPSFG*WRAGKWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQRRREGRTVVLVPRLRDKNSAENVRHQLRGYFDLMQAAMEHERCRTYMKE 410
            LV  +V  P    RP     RAGKW S VH G+HTLGI+STQR ES N A KK+V +KGD+ DL RA+L KVQDD  RTQRR  G TV  V  ++  +  E+ R +    F+ +  A+++E+C  +  E
Sbjct:  227 LVTSSVSCPLSLSRPVTCDRRAGKWASYVHPGLHTLGIASTQRVESMNAAVKKLVTRKGDMVDLGRALLGKVQDDINRTQRRNLGGTVARVA-VQGHSYVESFRTKHLRTFNFVLNAVKYEQCSQHATE 354
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5JB23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB23_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.030e-19
Identity = 49/110 (44.55%), Postives = 73/110 (66.36%), Query Frame = 3 
Query:   72 FG*WRAGKWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQRRREGRTVVLVPRLRDKNSAENVRHQLRGYFDLMQAAMEHERCRTY 401
            FG  R  KW SCVH G+HTLGI STQR E+ N+A K++V + G + +L+RA++ KVQDD+ +T+R+ +G  +   P L   +S ENV+  L  +F  +  A++HER  T+
Sbjct:  405 FGKGRVEKWASCVHPGLHTLGICSTQRVEAMNSAVKRLVTRSGTMVELNRALMGKVQDDANKTKRKSDGGRLPRAP-LSSMSSMENVKRGLLKHFSFVVDAVKHERSSTH 513
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5JZ35_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ35_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.520e-14
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 3 
Query:   72 FG*WRAGKWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQR 266
            F   RAG+W + VH G+HTLGI+STQR ES N AFKK+V + GDL+DLDRAI+ KV D  I+ +R
Sbjct:  341 FSPGRAGRWAAFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVSDGKIKAER 405
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5LBK2_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBK2_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.690e-14
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 3 
Query:   84 RAGKWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQR 266
            RAG+W + VH G+HTLGI+STQR ES N AFKK+V + GDL+DLDRAI+ KV D  I+ +R
Sbjct:  305 RAGRWAAFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVNDGKIKAER 365
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5JRX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.120e-13
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 3 
Query:   84 RAGKWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQRR 269
            R  KW SCVH G+HTLGI STQR ES N+A K++V + G + DL+RA++ KVQDD+ +T+RR
Sbjct:   13 RVEKWASCVHPGLHTLGICSTQRVESMNSAVKRLVTRAGIMVDLNRALMGKVQDDANKTKRR 74
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BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5K1S8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.700e-9
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 3 
Query:   93 KWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQRRREGRTVVLVPRLRDKNSAENVRHQLRGYFDLMQAAMEHERCRTY-MKEVS 416
            +W   VH G+ TLGISSTQR ESTN A K  + + G + D+ RAI  KV DD  +T+ +  G  +  V R+  ++S  +VR      F  +   M H  C  + MK++S
Sbjct:  128 RWAKYVHPGLPTLGISSTQRVESTNGALKPAMTRTGTMVDVHRAISGKVSDDVNKTKTQTTGGPIQRV-RVPTQSSFGDVRDSWLADFKFVHDGMLHAGCSAFAMKDMS 235
[Close]
BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Match: A0A6H5K9H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.920e-8
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 3 
Query:   93 KWVSCVHRGVHTLGISSTQRAESTNNAFKKMVVKKGDLYDLDRAILAKVQDDSIRTQ 263
            +W   VH G+ TLGISSTQR ESTN A K  + + G + D+ RAI  KV DD  +T+
Sbjct:    8 RWAKYVHPGLPTLGISSTQRVESTNGALKPAMTRTGTMVDVHRAISGKVSDDVNKTK 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig19.3453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JIP1_9PHAE1.690e-3054.87MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JDT4_9PHAE1.860e-2958.41MULE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A6H5KQ14_9PHAE1.110e-2244.27SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G8C7_ECTSI8.560e-2046.51Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5JB23_9PHAE3.030e-1944.55MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JZ35_9PHAE1.520e-1460.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LBK2_9PHAE1.690e-1462.30MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JRX3_9PHAE5.120e-1358.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1S8_9PHAE3.700e-938.53SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K9H0_9PHAE1.920e-850.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig19contigP-fluviatile_contig19:614979..617323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size762
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig19.3453.1prot_P-fluviatile_contig19.3453.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig19 616348..617007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.7653883-UTR-P-fluviatile_contig19:614978..6150601622815793.7653883-UTR-P-fluviatile_contig19:614978..615060Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 614979..615060 +
1693563325.734567-UTR-P-fluviatile_contig19:614978..6150601693563325.734567-UTR-P-fluviatile_contig19:614978..615060Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 614979..615060 +
1622815793.7820337-UTR-P-fluviatile_contig19:616247..6163471622815793.7820337-UTR-P-fluviatile_contig19:616247..616347Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 616248..616347 +
1693563325.745355-UTR-P-fluviatile_contig19:616247..6163471693563325.745355-UTR-P-fluviatile_contig19:616247..616347Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 616248..616347 +
1622815793.8221154-UTR-P-fluviatile_contig19:617007..6173231622815793.8221154-UTR-P-fluviatile_contig19:617007..617323Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 617008..617323 +
1693563325.7771802-UTR-P-fluviatile_contig19:617007..6173231693563325.7771802-UTR-P-fluviatile_contig19:617007..617323Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 617008..617323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815793.795364-CDS-P-fluviatile_contig19:616347..6164301622815793.795364-CDS-P-fluviatile_contig19:616347..616430Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 616348..616430 +
1693563325.7564306-CDS-P-fluviatile_contig19:616347..6164301693563325.7564306-CDS-P-fluviatile_contig19:616347..616430Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 616348..616430 +
1622815793.8089318-CDS-P-fluviatile_contig19:616826..6170071622815793.8089318-CDS-P-fluviatile_contig19:616826..617007Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 616827..617007 +
1693563325.7673123-CDS-P-fluviatile_contig19:616826..6170071693563325.7673123-CDS-P-fluviatile_contig19:616826..617007Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 616827..617007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig19.3453.1

>prot_P-fluviatile_contig19.3453.1 ID=prot_P-fluviatile_contig19.3453.1|Name=mRNA_P-fluviatile_contig19.3453.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=88bp
MVVKKGDLYDLDRAILAKVQDDSIRTQRRREGRTVVLVPRLRDKNSAENV
RHQLRGYFDLMQAAMEHERCRTYMKEVSCGSVTCANE*
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mRNA from alignment at P-fluviatile_contig19:614979..617323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig19.3453.1 ID=mRNA_P-fluviatile_contig19.3453.1|Name=mRNA_P-fluviatile_contig19.3453.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2345bp|location=Sequence derived from alignment at P-fluviatile_contig19:614979..617323+ (Porterinema fluviatile SAG_2381)
TCCTCCACCACCGGCGTCCACAAGCTCTTGTGTGTGGTGCAGTCAGACAT
CCAGCCGGATTTCGGCCTAGCTTCGGGTAATGGTGAGGTCAGAGACCAGC
AGGGTATTTGGAAGGATTGACTCTTGATTCGTTGCACATCCTATGCTTGA
GGGCTATTTGAGGTACATTCCGGAAGGGATCGTTGAGGTTATGCGAGATA
TCACCACGGTCGGGACAAGCAACGGATTAGAGAATACGATCAAAAGAGTA
ATTGTGTTCCTTAGAGAGAGATCAGAAGAGTAATTGTGGTGTCTTGGGGG
GGCAAGAGAAGTATCTTGTGAGTTCAAGGAAGATGACGGTTTGAGAATGT
GCTGTGGGTTGAAGGACTCGTCTCCCCCCCAACCGTTCAATACTCCACCT
GATTCCTCAGTCTATCTGCATTTAATCAAGGCACAAACACAATCGACTTC
GCCCCAACCGCAGGCTGAATCTCGTTCAGACCTCCGGCATCTCTCCACAT
GTCAGTCTCCGGGGCGACCCCCGTATACACTACAAGCCACACTACAAGGC
AGATGATGATGCAAGAAAGCACCAGCTATAAAAACGCCTCCAGAACCAGC
CTTTACCGAACCGATCGTGAACTTCACGCACGCTGCACAAACCGATTTTG
AATTGAACACATGCTGTCCACTTGTGTGCGAGGGATCAACGCTCGCCACG
GCGACGACGCACACCCCAGATCACACACACAAACATCGCAGTAGACACGC
ACACATGCATGGAAGTGTGTGCGAGGGATTCCCGACAGATATGTTAATCG
TTAGCTCGCTGTTATCAGTCGACACAGATTACCACCTTCGTCTCTGCAAT
CATAGCCGACCGACCGCTCCCATGTCAAGCGGTTCTGACTTTGGGCTGAA
GATGCCCCCCTTCATTTACTTGTACATTTCTCCCTGCGGGTCCAGCATCG
CTAGGACCTCCAGTTTATGCTGAAGGTAATCCTGCCAGAGCTGAAGTTTT
AGTTTTCAGCTCTGGCAAGCTTACGTTCAACGTTAAGCGGAGATCCTAGC
GATGTTGGACTCTTTGGGCAATGTACAAGTACTGAAGGGAGACATCTTCA
GGCCAGAGTATAAACCGCTTGACATGGTCGCGGTCGGTCGGCTATGATTG
CAGAGACGAAGGTGGTAATCTGTGTCAAGAACATTTTCTGTTTGGCCCCA
CGTGAATTCGTGACGCTTTCCTCTACCTGTGCCTACTATAACCTTGAGCC
GTCGCGTAACGTGTAACAGGCGAGCTGGCAAGTGGGTCTCATGTGTCCAC
CGTGGGGTTCACACTCTCGGCATTTCCTCCACGCAGCGAGCGGAATCGAC
GAACAACGCATTCAAGAAGATGGTGGTCAAGAAGGGAGACTTGTACGACC
TTGACCGGGCGATCTTAGCCAAGGTTCAGGATGACTCCATCAGGACCCAA
CGGTGGGAATATGGTGTCGTTGTCGTGTGTACTTTCGACCCTTTTGTCAC
GAAGCGTGGCAAAGTACCCGTGGGTGTTGGGCGCTTGTATTTTGCCGAAA
TGCGTACAAGCGACTACGTAGCACCCTGCCGAACCGACGACCACTTGTAA
CATCCTCTTGCCAGTGCGTGTCCCGGACGTCTGCTGACCGTAGGAAGAGT
ACAATGCCGGAACGGCTAATTCCCCGAATTACGTCTGCATCGCGTTGGCT
CTACGGACTTCGCATTTCTCATTCGACCCATACCGGGCTCCCTCGCAACG
ATTGCAAACGAAAAGTAGCACACCACCAGCCACAGCGGGGCTCTTAAACT
TGTGACGCTGTTCGTTGTTACGGCTCGATACTCCGCCGTACTTTGTAGGC
GACGTGAGGGAAGGACGGTCGTCCTGGTGCCGAGGCTTAGGGACAAGAAT
TCCGCGGAGAACGTGAGGCACCAGCTCCGCGGGTATTTCGACTTAATGCA
GGCGGCAATGGAGCACGAGCGATGCAGGACATACATGAAGGAAGTTAGTT
GTGGTAGTGTTACTTGTGCCAATGAATGAGCCGCTTTCGCCTCTCCCCTA
TAGCGCCATATTTTGCCCCCCTTACATGCCGTACCTTGGAAACTATGCAC
ACGGCGGCGCGGCCATGAATTGTGTGGTTAACCCCCCTTCTTGTTACCCT
TCAACCCCAACTCTTTGTGCCCTCTTGCTGTAGCATACGGGAACATACCA
GCGTACTTGTCGAGGGACGAAGATGATCAGGCGGCGTGTTCCGCATCAAC
AACGCTGCTTGTAGTCCTTTCAAATACCAGACCTTGATTTTGGGTCGACC
CCCTCTCGCACGCCGCCTCTACCCGCGGTTTCGCCGTAATTGCAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig19:614979..617323+

>mRNA_P-fluviatile_contig19.3453.1 ID=mRNA_P-fluviatile_contig19.3453.1|Name=mRNA_P-fluviatile_contig19.3453.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=528bp|location=Sequence derived from alignment at P-fluviatile_contig19:614979..617323+ (Porterinema fluviatile SAG_2381)
ATGGTGGTCAAGAAGGGAGACTTGTACGACCTTGACCGGGCGATCTTAGC
CAAGGTTCAGGATGACTCCATCAGGACCCAACGATGGTGGTCAAGAAGGG
AGACTTGTACGACCTTGACCGGGCGATCTTAGCCAAGGTTCAGGATGACT
CCATCAGGACCCAACGGCGACGTGAGGGAAGGACGGTCGTCCTGGTGCCG
AGGCTTAGGGACAAGAATTCCGCGGAGAACGTGAGGCACCAGCTCCGCGG
GTATTTCGACTTAATGCAGGCGGCAATGGAGCACGAGCGATGCAGGACAT
ACATGAAGGAAGTTAGTTGTGGTAGTGTTACTTGTGCCAATGAATGAGCG
ACGTGAGGGAAGGACGGTCGTCCTGGTGCCGAGGCTTAGGGACAAGAATT
CCGCGGAGAACGTGAGGCACCAGCTCCGCGGGTATTTCGACTTAATGCAG
GCGGCAATGGAGCACGAGCGATGCAGGACATACATGAAGGAAGTTAGTTG
TGGTAGTGTTACTTGTGCCAATGAATGA
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