mRNA_P-fluviatile_contig18.3335.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3335.1
Unique NamemRNA_P-fluviatile_contig18.3335.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:2220746..2227730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1646
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.976969-UTR-P-fluviatile_contig18:2220745..22217341622815774.976969-UTR-P-fluviatile_contig18:2220745..2221734Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2220746..2221734 -
1693563290.5560796-UTR-P-fluviatile_contig18:2220745..22217341693563290.5560796-UTR-P-fluviatile_contig18:2220745..2221734Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2220746..2221734 -
1622815775.0433357-UTR-P-fluviatile_contig18:2225816..22258191622815775.0433357-UTR-P-fluviatile_contig18:2225816..2225819Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2225817..2225819 -
1693563290.5977228-UTR-P-fluviatile_contig18:2225816..22258191693563290.5977228-UTR-P-fluviatile_contig18:2225816..2225819Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2225817..2225819 -
1622815775.0534134-UTR-P-fluviatile_contig18:2227622..22277301622815775.0534134-UTR-P-fluviatile_contig18:2227622..2227730Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2227623..2227730 -
1693563290.6115391-UTR-P-fluviatile_contig18:2227622..22277301693563290.6115391-UTR-P-fluviatile_contig18:2227622..2227730Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 2227623..2227730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.9904218-CDS-P-fluviatile_contig18:2221734..22218581622815774.9904218-CDS-P-fluviatile_contig18:2221734..2221858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2221735..2221858 -
1693563290.5635087-CDS-P-fluviatile_contig18:2221734..22218581693563290.5635087-CDS-P-fluviatile_contig18:2221734..2221858Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2221735..2221858 -
1622815775.0044386-CDS-P-fluviatile_contig18:2223386..22234971622815775.0044386-CDS-P-fluviatile_contig18:2223386..2223497Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2223387..2223497 -
1693563290.5713623-CDS-P-fluviatile_contig18:2223386..22234971693563290.5713623-CDS-P-fluviatile_contig18:2223386..2223497Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2223387..2223497 -
1622815775.0161738-CDS-P-fluviatile_contig18:2224250..22243421622815775.0161738-CDS-P-fluviatile_contig18:2224250..2224342Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2224251..2224342 -
1693563290.5793629-CDS-P-fluviatile_contig18:2224250..22243421693563290.5793629-CDS-P-fluviatile_contig18:2224250..2224342Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2224251..2224342 -
1622815775.0290377-CDS-P-fluviatile_contig18:2225597..22258161622815775.0290377-CDS-P-fluviatile_contig18:2225597..2225816Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2225598..2225816 -
1693563290.587368-CDS-P-fluviatile_contig18:2225597..22258161693563290.587368-CDS-P-fluviatile_contig18:2225597..2225816Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2225598..2225816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3335.1prot_P-fluviatile_contig18.3335.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 2221735..2225816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3335.1

>prot_P-fluviatile_contig18.3335.1 ID=prot_P-fluviatile_contig18.3335.1|Name=mRNA_P-fluviatile_contig18.3335.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=182bp
MAPHHARKTETSNRGGWLLSALALVALLCNGAAAAAPDPFRQLQTATTLD
CSPETRSCTENDVCNNCIISFEAEGLTCTDYDYDKTNECQVRGVAYCCGA
EGTGDPDECLVDASTLELWACLMEENGCNLSDMPCFQRESSGVSAQQSGA
SRGAAAAGAAAAAATALALALTVTGGGLFSL*
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mRNA from alignment at P-fluviatile_contig18:2220746..2227730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3335.1 ID=mRNA_P-fluviatile_contig18.3335.1|Name=mRNA_P-fluviatile_contig18.3335.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6985bp|location=Sequence derived from alignment at P-fluviatile_contig18:2220746..2227730- (Porterinema fluviatile SAG_2381)
CTGACCCCTCACTCTCTACCTTGTTCGACGAACCCTCGCTAGACTCATCG CCGTCCTTCTACCTCGGCTACCGTTCCCAAGCATCGCTGTTGTTTTCCTC GTCTCGATGTGAGTAAATCCTTCCGCTCCGGCACGAACGATACAAGTACT GCTGTAGGTGGTTGGGACGGTACAGGTGTGGGGAGAGATTCGTTGGCACA AAAAACCCGAGATAGAAGGCTCCCAGCGGCGTCAATACCGACAAGCTGCT GGACTGGCGCGTTGTCGATAAGCTTCACGGAAACCACGGGTTCTTTTTTC GTTCGACCGCGAGAGGTGCTTGTCGATCCCTGACGGAGGGCCCTGCGCGC TTTGTCGGGAGAGAGTGGTGACCGCGTCGTCGCATCCCCGAGCGACGTCG CATCTCTGTTCATATTTCGACCGGACAACAATTTGTGCGCACAGCAGCAG GGTCTAGTGGTGCGCACTCGAGAGCAGCACGCCCACCAATGATGGGCACG GTGCCGTGTGCTGCGTTAGTGCACCAGCTTTCCCAAGCTTTGAAAGTGCG CGCGCGCGTGATGCGTGTGAGTCGTAGGACATGGATTTTTGAATTCCCGA CGAGACACACATCTACACACACAAATCGACCAAGGGAAAAAATACATGTG TATTTTTTCCTCATTCCCTACTCCCTTGCCCCCCGCGCCTGCCATCATGC TTAACGCCATTTGATCAAGTGTGGTATACAACATTCAATCTGCATCGGCT CCCTAGTCACTAGGGAGCGTTCACGTCCCACCGCGCGTCTCTCTGTTTGT GACATCAGAACAAGACTTGAGAAACGAAGGCGCGAGCTCCTGCTTCGGAT CAATTATTTAAAATACTCTGGAACAAGATACGTTAAATCGAAACAATCGG AATAATTGTTGACCGCGGTCGAACCTAGCAGTCCCCTACCACCGCCTCTG GCTGGGACAGAGGGCTTATTCCACCAACATGGCAAGTAGAAGACTGGCCT CACTCTGCAGCAGCCATAGCGGTTGCCGGAACGAGAGCCGGTCGATTTCC CGCCGTTGGGACCTCTCGAAATAATCACCCGCTTTCGTCCATGCCTTCCG AGTGTTTAGCCCGTTCTGCATGTGCACCTTTTCCTCTCACGAGGTTGCCT TCCCCGAGTTTCTAGACGGAGGTTGTGTTTTGTGTGTTTGGTGCGCGATT GCCACAAAGCAGGCAACGAATCCTCCCCCATCAGAAGCGGCTGCTGGCCG TTCCCCTGTCCATTGGGTGCTCCTATGCGCGTTTGCGGGCCTCGCTGGAA TATTGTAAACCTTCCCGTCGATCTTTTTTCACGACACGGGGGGGACGCTA GAATGGGCTCCATGAGTACTGTCCCAGCTCACAGAATGCTTCGTCGCGAA GACATAGCTCGTTGGAGTGGTGTATCCCACCTCTCACCCTCTCTCTCCGC GCGAGGAACCTTGTGGAGCATTTTCGCGTCGGGGCGCGAAGCAAGCGATG GCCATAGCCGGCATAACGTTCCCCATCAACTCTCACTGGAGCCATTGGTG TAGACCGGCAGCCACGGCAGTGGTCACCGTTATTGTGGTCGAGAGGCCAG CTGCGCAAATCCAACTTACCCACCACGACTGCTATTCCCTCCTATGCTCC CCGTCTCGCTGCAACTGATACCCCTTCCCCCTCCTGCCTTAGCCCCCACT CGTTCCCCCCACGACCCCTCTCGCTTCAAGGCACGAAGCACGAACCCCGT TTTGGATCACTTAATCCATTTTGCCCTTCGAAAATTCTGAGAACCGCAGA CGAAGACATCATATGTATGTATCCGATATTTTTAGACATACTTCTCTTCG ACAACATCGATGAATTCATCAAAGTTTTCTCTTTGCCATGTCGCGCACCC GCACACCGCAGAAGATGGCCCCGCATCACGCCCGAAAGACGGAGACATCC AACAGGGGGGGCTGGTTGCTGTCCGCTCTCGCCCTCGTAGCGCTCCTCTG CAACGGAGCGGCGGCGGCTGCGCCCGATCCGTTCCGCCAGCTGCAGACCG CGACTACTTTGGATTGCTCCCCCGAGACCAGATCGTGCACTGAAAACGAC GTATGCAACAATTGCATCATATCCTTCGAAGCCGTGAGTATGATAGCTTC TTGGGGAGGGGGGGGGGACAAGGACACAAGCGAGAGACGCGCGCGCAATT GGGTGTGCGCGCGCTTAGAGAGGGGGAGGGAGGGAGGGGGCATGTGGGCG CAGGAGTAGCGGAGGAGCGGGGGTTCACGCCGATATTGCCCGTGCGTGTG TCTTGCTCTGCTAACTTGTGCACGACGGTCTCGAACAACAGAAGAGAGCT GCGCCAAGGCGCGCCACCTTCTGTCTCGAGATTTGCAGCTGCTACCTTGA GAGTACCCAGGCCGGTATGGTTTTCAAACCAAGAAGGCGAGCGCGGATGA TGCGGCACACGAGGGCGTGGGCGGGTGTGGGGATTAGAGGGTACTTCGTA TACAGTCACTGATTCGGTCATTCGCCACGCATCCACTGCGCCCCCAGAGG CATGAGAGACAGACGGCGCTGGCACCGCTCCCGACGATGGGGCTGCTACG CATTCTCCTTATGGACTTCCGCACGACCCAAACGTCTGCCGTGGATGGTG CCACCTCTCAACCCCCATGAACAATTTTTGCTCTGCTTTCCCTTTGATGC CTCCCCCGCTGGCATGCACGCGAGTAACGAGTACGACCGCACATTGTTTG GCTTTTTATCCACGTTAATAATATTTTCCCCTTCTGATTCGTTTTGGATA CATCTTCCACGAGGGACTGTCGTACACTCGAGAGCAAGACCGAATGAAGC AATCTCCACGCCCGTTATTTGTTGATGCTCTCCCCGGTCCAAATTTCCCT CTCCAGGAGGGACTGACGTGCATTCGTCACGACTAGAGGGCCGCATGATA CCCCGTTTTCACTTCACGCTCACCGTGCTATTTTCTTCTGATGTGTATAT CTCGGATACAATGGTTGTGGCGTTGGTTCACCGGTTCCCGGCTACGCGGC GATCTATTTAAGAGCGTCGCGGTTGCAAAATTAATCCCGCAACACCACTG CATTCTTGACGTGCAGGCCAAACTTTGGTATGGCGGCGATGCTCCTGAGC ACAGGGGCCAGAAATTTCCCCGACACGATGAACCGCTTAACCTCTAACCG CGACGGTACACCTTGAAGGAGCACGCAGTACGACTATGCGCCCCCCAAAA CATCCTCTTTTTACCGGTAATCAAATGGCGTTAACAGTGGGAATACGAAA ATATTTCCAAGTATGCTTTTGTGTTTAAACTATAATGACAATTTCTCCTT TGTGTCTTTTGTTGTTTGATCTTGGATTCATCCCGCAGGAGGGATTGACG TGCACGGATTACGATTACGACAAGACGAATGAGTGCCAGGTCCGAGGCGT GGCCTACTGCTGCGGGGCGGAGGGCACCGGGTGAGTCGATTAGAGTCGAG TTGGGTGGAATTGTGTCAAGTTGAGTCGAGTCGAGTCGATTGTATACGCG TTGACTCGGGTCGGGTGGAATTGTGTCAAGTAGAGTCGAGTCGAGCCGAG TCGATTGGATTTAATTGGCTCGGAAGTCTTACGATTTTTAACTCTGCTGC CGGCAGCTTTTCGACAACGATTTGTGCGGCACACAACTTCTTACTTTTCC TGGGGCTCACGCTTGCCCACTAGTGGAGATAAAACATATGCGCTTTTTGT AGAACATCTTGAAAGCGAATATCACGAAACACTCGTCTCCGAAGCATCCT GAGGGAAAGTCGCGACAGGAATGGATTCTACCGTCGGCGTAGCTTCGAGC CATGAAATGAGCCTCTGCTGATAGGCTGGCGAGGAGGGCCAATCCTTCTG TACCCAGGTTTCATTGATAATTTGGCGGTCCACAAGCGCCAGCAATTGGC GGTATCCCGAGCTGTGCCCACGCCCAACCACCATAACCAAGGACACAGCC ACAGAAAAAGCAATGGTTGAAAGAGCAGCGAACGGGATAGAAAAGCACAA CGGTGTAAAGGAAGCAACCGAAACAAGCAACAGAAAAACGTTCGTGTATG GGAACAAATGAGTGGAAAAACGACGGTGTTGAGGGAGTACATGTGAGACA AAAGACGCCGGCGCGGAATCGTGCTTGCTACTGCTGTCTTCTCCCCCCTC CTCACCTCCCCCCTTCGCTCGCTCGGAAAACAGCGACCCGGATGAGTGCC TCGTGGACGCCTCCACGCTGGAATTGTGGGCTTGCCTGATGGAAGAGAAC GGCTGCAACCTGTCCGATATGCCGTGCTTCCAACGTGAGTCGTCGTTTTG ATTCCAACGTTTTATATTCTCGCTCCAACATTCATATTTTCGCTGTCAGC GAGGCACCTTGCCGTTTCCAACTTGAGATATACTCCGGAGTAATTTTGCG TCTAGCTTGAGCTTCAGTCTTTCGGCGCATACTCGGAAGCTGCTCCTGGA CTTTGGCCATCCACCGCACGCAGGATCTCCCTCGTCCTTGTCGAAGGGTA TTCCCGCTGCGCCCTCGATGGGAGGATGCGTCGAATGCCAAACTTTAATT CGGCCGGAATTGAATCGAGTTTGTGCGAGGTTGGACGCCTCTCCTGAACT GCCTACCTCAATCCCGCAAGATTTGAACGCTTTTGCGCGAGTGCCCTCGA AATCGTGAAACCTCAAGACATGTCTCTTTTGTGCCCCTCCCCTCCCCTCC CCTCCCCTCCCTTTCCCCCCGACATGCACGCTGTGGGGCCCCGGTGTGTC GCGAGCAAGCAGAGGACTTCAAGTGAGTGACTGTAGTCCACCCGTAATGT GTATGCCCATGTGTAGTCCCCCCCGTAACCAGGCAGCCGTGGTGCACACG GTTTCCATATTGGTGAAGCACGGGGGGAGTAAACGACGCTCTGTGATGGG TATAATCGCTTGAAACAGAGACACCATTGCCAATATTGCCTTGTGATTGT ACGACGGCGGTGGGGTTTGATCACATCATTCCCCTTCTTGCTTCTCAGTA ATTCACAAGTATTTTCAGGGCAAGTCTTTCCCTCCAAGTACACCCTCCAA GTACAGGATTCCACAGTGGCATCACCTCCCGCGGGTAGCGTGACCACTCC TTTCTTTCTTCGAAGTTTCCAGTAAACCTCCTCGATGACGGGATGCTTCC CACCATATCCCATGCTGCATGAGTGCCGAGAATGTTGTGTATTCGTGCGC ACGTGCCAAAGTTGCAAGCCGCGAGACGATGCCCCCACCCGTCTTCGCTT GTTGACTGTTCGTTTCCATCTGAGTGTTTTTCTAATGCTGTACGTGGACA GACTGGCACCTGATTTGTTCGCGTGTGGATTGCTTCAACTGCTTGCCTCG GTGTAGTTCGAAGGGCTTCACCCCGCTCGTTGCAGCACCTGCGGTGTGGA ATCAGCAGTGGGTACGGGGTAATCGGCAACAGATTGGAGAAACCGGAACT GAATCTACAGAAAATCGACCGGCCGCCTCGCTTGTCGCACGACCAGACCA CAGCACACAGAAACGCTCTAGAATTTGCCTGTGCGTACACTCCAAATGTT TCCAAGCTGACAAGCTGATCGGTGTTCCTCTTGTGTACCACGGACGCGAA GGTACGAGAAACCCTCCCTCTCGAAAAGGGATGGTTCAAATCTGCACTTA CTCGTTAATGCCACCTCCTCCCCCCCCTTCCCTCTCCCCCGAAAGAAAGT GCACGTCACCCCCGCCCCCCCACATTCTCGGACAAACACGCAACCCCATG TGCGGGCACAAACACGTAACTCCCGCTCCCCCCGCGCGCGCTCATGTTTC CTTTGTTCTTCGATGCCTGCAGTGGAGTCTCGGCCCAGCAATCCGGGGCC TCTCGAGGTGCCGCTGCGGCAGGAGCGGCAGCGGCGGCGGCGACCGCTCT CGCGCTTGCGCTCACCGTTACCGGCGGCGGCCTCTTTAGTTTGTGAATTC TGTGTTTGGTCAGGGCGGGGAAGTAGCAACGCTGATGTTGGGTACGGTCC ATCCTTGGAGAGCAGTTTGGTGCTTGAGAGAGTGAGAAACAGTCCGGTGA TCAGCCCGATGTGTGTTTGATTATTCCTAACGATGTGCGTCGTGTTTGAT GAGCCCTGCATGTGCGGAGTTGCTGAAAGATGGTGAATGTGTGTTCTGCT AACTGTAATATGGTGTAAGATTTATCGCGCCCGCCGTGCACGAGAAGTCG ATGAAGCGAGTTTCGCGTTCCGCGTGTGGCTTTGGACGCGTTTTATCTTT CGGGGAAGCAGCGAATGTCGCCCTCCGCCCCACCTCATCCCGCACGGGGG CAGGGCTTCAGCCGCTCCCGTCGCCCCCTCTTGGTCGATGTTGATACGCT TCAGGCAGCAGCAAACCGCAACAGCAAGCAGCACGGGGTTTGGCGGACAT TCGTTGCTTGAGGCCTGCCGAGCTGTTGGAGGCAGCCAGCCAAGCCGGTT CTAATTGCCTTTGCCGGCGGCTTCGTGTTCGCGAAGGCATCACAAGTAGA TGACGTGTTCGACGTTTGAATTGTTTTTCGGTGAAGGCATGGAAATTAGA ACCGGTTCAGTTGTCGAGCCACCTACGCAAGTTTCTAACTGCTGCCGTTG TCGCTGTCGCTGACGCTGCCGTTGTTTCATGCCATCGTTGAATTGGTCTT TGCTGTTTATTGCTGTTTTCTTTGTTCTTCGTTGACGAGGTCCCATTCTT GTACTGTTGTAGGCGCCCGACATTTCTCTTGGGGATTTCGTTGAGCCAGA ATGCCCTCGCGACTTTCGAAGACATGTCTGCCCTCAGTTTGTAGGCTCTC CATGCTTGATATCACCAAATGAGTGCAGGCGGGAAGGCGTGGCAAACGAG GCGGAGTTTATGTATACTCCCGAACAATCGCGAACGCTTTTCGCCCAACG GGTGCAGAACTGCCTCGACTTTTTGCCAACCGACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:2220746..2227730-

>mRNA_P-fluviatile_contig18.3335.1 ID=mRNA_P-fluviatile_contig18.3335.1|Name=mRNA_P-fluviatile_contig18.3335.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1092bp|location=Sequence derived from alignment at P-fluviatile_contig18:2220746..2227730- (Porterinema fluviatile SAG_2381)
ATGGCCCCGCATCACGCCCGAAAGACGGAGACATCCAACAGGGGGGGCTG
GTTGCTGTCCGCTCTCGCCCTCGTAGCGCTCCTCTGCAACGGAGCGGCGG
CGGCTGCGCCCGATCCGTTCCGCCAGCTGCAGACCGCGACTACTTTGGAT
TGCTCCCCCGAGACCAGATCGTGCACTGAAAACGACGTATGCAACAATTG
CATCATATCCTTCGAAGCCATGGCCCCGCATCACGCCCGAAAGACGGAGA
CATCCAACAGGGGGGGCTGGTTGCTGTCCGCTCTCGCCCTCGTAGCGCTC
CTCTGCAACGGAGCGGCGGCGGCTGCGCCCGATCCGTTCCGCCAGCTGCA
GACCGCGACTACTTTGGATTGCTCCCCCGAGACCAGATCGTGCACTGAAA
ACGACGTATGCAACAATTGCATCATATCCTTCGAAGCCGAGGGATTGACG
TGCACGGATTACGATTACGACAAGACGAATGAGTGCCAGGTCCGAGGCGT
GGCCTACTGCTGCGGGGCGGAGGGCACCGGGAGGGATTGACGTGCACGGA
TTACGATTACGACAAGACGAATGAGTGCCAGGTCCGAGGCGTGGCCTACT
GCTGCGGGGCGGAGGGCACCGGCGACCCGGATGAGTGCCTCGTGGACGCC
TCCACGCTGGAATTGTGGGCTTGCCTGATGGAAGAGAACGGCTGCAACCT
GTCCGATATGCCGTGCTTCCAACGTGAGTCGTCCGACCCGGATGAGTGCC
TCGTGGACGCCTCCACGCTGGAATTGTGGGCTTGCCTGATGGAAGAGAAC
GGCTGCAACCTGTCCGATATGCCGTGCTTCCAACGTGAGTCGTCTGGAGT
CTCGGCCCAGCAATCCGGGGCCTCTCGAGGTGCCGCTGCGGCAGGAGCGG
CAGCGGCGGCGGCGACCGCTCTCGCGCTTGCGCTCACCGTTACCGGCGGC
GGCCTCTTTAGTTTGTGATGGAGTCTCGGCCCAGCAATCCGGGGCCTCTC
GAGGTGCCGCTGCGGCAGGAGCGGCAGCGGCGGCGGCGACCGCTCTCGCG
CTTGCGCTCACCGTTACCGGCGGCGGCCTCTTTAGTTTGTGA
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