mRNA_P-fluviatile_contig1.259.1 (mRNA) Porterinema fluviatile SAG_2381
|
Overview
Homology
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Match: D7FK51_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK51_ECTSI) HSP 1 Score: 323 bits (828), Expect = 4.440e-89 Identity = 601/1159 (51.86%), Postives = 644/1159 (55.57%), Query Frame = 3
Query: 426 GDEADLLALLKRLGLARSSCSSSRXXXXXXXXXXXXXXVCGGKSEGDG-PRTDKSM-----------RVPAPISGSQT-PHECAGDDSSPAAGSA----LQGDHSQXXXXXXXXXXXXXXVGNKKSERSSMKNSXXXXXXXXXXXXNGYNHNGHERSQSDGGVGIGNRYPHRXGXXIGSDSNSCRAPPRRQRYGLRRDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVAG----------DGMVDLMRREITAREALLLGPILRAATGVTCLKLCYNHLKDGGAEAVSEAIERHPSLHTMDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAXXXCXVASALVASNLILSDLHMSDNEIGDAGVEGLALALKRNTSVRLLELCFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLGLETVDVAFNNVGTAGVAALVQATVNSPCFTSLSLSGNALDAEAAKAIQAALAQPRCALRRLFLDHTSLGRASEGFIASGVLSNRSLALVTLTGFRLGSSFVRLGMPPQVESFTNGKALEQVRVYWRNHLNLAAGGGGVGASRSXXXXXXXXXXXXPVAARVGREVAAVEGGSGLRDDEGRSGARIGGGTGTDVPRTLAPSQVRHRHPQHTERGGAGXXXXXXXXXETKGAHTAPPEYLNQRQQHLLQQEQQQQEHCQHVWPDASGRAAPVAAQAEGSSEPAPGVAPNGSGXXXXXXXXXXXXXXXRRLGRAASERVPASAAXXXXXXXXXXXXXXXXXXXXXGTEREAVVDAVRGPLVHALHQIAQLPFGAAELWSLHQFYFSPPRGNPRSP-----PASATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLPLLPATGGCGDGGDVDDGGVA--PGARRSRRSASMGHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSKTRIACFPLVEARIRALKSKPDDRRILTTLRQLRYLQTVVGEGGGDEADGSSXXXXXXXXXXXXXXXXXXXXXXXXGSDDPKDAPTWNVPTNVLLTDAEIENILLEEL 3800
GDEADLLALL+RLGLA S S XXXXXXXXXXXXXX PR K PAPI+GSQ P AG ++G+A Q H Q V N+ S +N G++H+GHERSQSDGGV NRYPHR G IG S+ P Q G++ ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DGMVDLMRREITAREALLLGPIL AATGVTCLKLCYNHL+DGGAEAVS AIERHPSLHTMDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D A+ RNTS+RLLELCF XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALPTLGLET+DV F++VGTAGVAAL+QAT NSP FTSLSLSGNALDAEAAKAIQAALAQPRC+LR L+LDHTSLGRASEGFIA+GVLSNRSLALVTLTGFRLGSSF RLGMPPQV +F+N +ALEQ + N + G G XXXXXXXXXXX V R E A GG G XXXX AV +A+R LV ALHQIAQLPF AAELWSLHQ YFSPP + SP P SA XXXXXXXXX G P AT +G + GV PG S E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +KTRIACFP VEAR+RALKSKPDDR ILT LRQL++LQT EGG + XXXXXXXXXXXXXXXXX G+ PK+ NV NVL TDA+IE ILLEEL
Sbjct: 24 GDEADLLALLQRLGLALSPSSXXXXXXXXXXXXXXXXXXXXXXXXXSPMPRASKPAVXXXXXXXXXXXXPAPINGSQAAPGISAGKKVPGSSGAAEWAPWQSTHIQQQQKQKQVPSAGRRVNNQPPRSSGRRNGA------------GHSHSGHERSQSDGGVRPANRYPHRCGGGIGGSSSLDMDDPS-QSVGMQVGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDGMVDLMRREITAREALLLGPILWAATGVTCLKLCYNHLRDGGAEAVSGAIERHPSLHTMDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC------------------------------------------------------------DXXXXXXXRAVARNTSIRLLELCFNRITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIALPTLGLETLDVGFSHVGTAGVAALMQATANSPSFTSLSLSGNALDAEAAKAIQAALAQPRCSLRCLYLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQVANFSNDQALEQQKA---NPPGVREGALGAAXXXXXXXXXXXXXXXPGVPRRAVSEDAGCRGGVGXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXAVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSPSSRSSPTSAASTPSPSTCPSKAGPGRTWAAXXXXXXXXXGG-GFPNGLATARDTEGRGSNPAGVLGPPGGGSRGCSGDEDAEVGAGARRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKTRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQTASEEGGKE--------VXXXXXXXXXXXXXXXXXVVDDGALGPKN-DVKNVLNNVL-TDAQIERILLEEL 935
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Match: A0A6H5KVK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK7_9PHAE) HSP 1 Score: 322 bits (824), Expect = 1.660e-87 Identity = 611/1192 (51.26%), Postives = 661/1192 (55.45%), Query Frame = 3
Query: 378 QGPPSPEEARAGRASYGDEADLLALLKRLGLARSSCSSSRXXXXXXXXXXXXXXVCGGKSEGDGPRTDKSMR--------------VPAPISGSQT-PHECAGDDSSPAAGSA----LQGDHSQXXXXXXXXXXXXXXVGNKKSERSSMKNSXXXXXXXXXXXXNGYNHNGHERSQSDGGVGIGNRYPHRXGXXIGSDSNSCRAPPRRQRYGLR----RDSSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVAGDGMVDLMRREITAREALLLGPILRAATGVTCLKLCYNHLKDGGAEAVSEAIERHPSLHTMDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAXXXCXVASALVASNLILSDLHMSDNEIGDAGVEGLALALKRNTSVRLLELCFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLGLETVDVAFNNVGTAGVAALVQATVNSPCFTSLSLSGNALDAEAAKAIQAALAQPRCALRRLFLDHTSLGRASEGFIASGVLSNRSLALVTLTGFRLGSSFVRLGMPPQVESFTNGKALEQVRVYWRNHLNLAAGGGGVGASRSXXXXXXXXXXXXPVAARVGREVAAVEGGSGLRDDEGRSGARIGGGTGTDVPRTLAPSQVRHRH-PQHTERGGAGXXXXXXXXXETKGAHTAPPEYLNQRQQHLLQQEQQQQEHCQHVWPDASGRAAPVAAQAEGSSEPAPGVAPNGSGXXXXXXXXXXXXXXXRRLGRAASERVPASAAXXXXXXXXXXXXXXXXXXXXXGTEREA--VVDAVRGPLVHALHQIAQLPFGAAELWSLHQFYFSPPRGNPRSPPAS-------------------------ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGLPLLPATGGCGDGGDVDDGGVAPGARRSRRSASMGHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSKTRIACFPLVEARIRALKSKPDDRRILTTLRQLRYLQTVVGEGGGDEADGSSXXXXXXXXXXXXXXXXXXXXXXXXGSDDPKDAPTWNVPTNVLLTDAEIENILLEEL 3800
+G +P +A A GDEADLLALL+RLGLA S S XXXXXXXXXXXXXX PR PAP +GSQ P AG +AG+A Q H Q V N+ RS +N G+ H+GHERSQSDGGV NRYPHR G IG S+S QR G++ ++ XXXXXX XXXXXXXXXXXXXXXXXXXXXXT DGMVDLMRREITAREALLLGPIL AATGVTCLKLCYNHL+DGGAEAVS AIERHPSLHTMDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ALPTLGLET+DV F++VGTAGVAAL+QA ALAQPRC+LR L LDHTSLGRASEGFIA+GVLSNRSLALVTLTGFRLGSSF RLGMPPQV +F+N +ALEQVR+YW NH+N AA XXXXXXXXXXXX + D G G+RIG G G D + + H PQ ++ G E P EY R HL + Q Q +H Q+ P G E A G A G XXX R + V A A GTER A V +A+R LV ALHQIAQLPF AAELWSLHQ YFSPP + SP + A XXXXXXXXXX G+P P G G GD +D V G RRSRRSASMG E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TRIACFP VEAR+RALKSKPDDR ILT LRQL++LQT EGG + XXXXXXXXXXXXXX G PK+ NV NVL TDA+IE ILLEEL
Sbjct: 6 EGEEAPTQAAAAAEEGGDEADLLALLQRLGLALSP--SXXXXXXXXXXXXXXXXXXXXXXXXXXPRASXXXXXXXXXXXXXXXXTTAPAPSNGSQAAPGVSAGKKVPGSAGAAEWAPWQSTHIQQQKQVPSAGKR---VNNQPPRRSGRRNGA------------GHCHSGHERSQSDGGVRPANRYPHRCGGGIGG-SSSLDKDDLSQRVGMQVGTAAAAAAVTPENAWQSGTSDGGASSPSAAXXXXXXVSTSPAQARGXXXXXXXXXXXXXXXXXXXXXXTTTEDGMVDLMRREITAREALLLGPILWAATGVTCLKLCYNHLRDGGAEAVSGAIERHPSLHTMDLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAI-ALPTLGLETLDVGFSHVGTAGVAALMQA---------------------------ALAQPRCSLRCLCLDHTSLGRASEGFIANGVLSNRSLALVTLTGFRLGSSFARLGMPPQVANFSNDQALEQVRLYWANHVNQAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRDPGDGGSRIGDGAGKD----FTGGALNNAHQPQRRQQCMGGGSPTAAVVTEKAIPPHPPSEY---RPHHLSRYHQHQGDHQQNANPP-------------GVREAALGAAATGH---------HGXXXGGRHHPGVSGRAVSADAGCQGGVGSSGGD----------GTERAAAAVPEALRASLVEALHQIAQLPFSAAELWSLHQHYFSPPLDHHPSPSSXXXXXXXXXXXXXXXCPSNAGPGRTWAAXXXXXXXXXXGGGFVHGSAIARDTEGRDSNPAGVPGPPGGGSRGCSGD-EDAEVGAGGRRSRRSASMGQEQDLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------TRIACFPSVEARVRALKSKPDDRGILTVLRQLKHLQTACEEGGKE----------FGXXXXXXXXXXXXXXVVDDGVLGPKNEVK-NVSNNVL-TDAQIERILLEEL 1082
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Match: A0A7S4ALF8_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALF8_9STRA) HSP 1 Score: 101 bits (252), Expect = 9.470e-18 Identity = 70/228 (30.70%), Postives = 110/228 (48.25%), Query Frame = 3
Query: 1638 CXVASALVASNLILSDLHMSDNEIGDAGVEGLALALKRNTS---VRLLELCFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLG-LETVDVAFNNVGTAGVAALVQATVNSPCFTSLSLSGNALDAEAAKAIQAALAQPRCALRRLFLDHTSLGRASEGFIASGVLSNRSLALVTLTGFRLGSSFVRLGMPPQVESFTNGKALEQVRVYWRNH 2309
C S L+ N L L + + +IGD V LAL++K N + + L+L F + +P + +E +DV FN++ T G+ L+++ S SLSLSGNA+DA AAK++ ALA C+L+ +FL H S+G + IA+G++SN AL L GF +GS + LG P ++++TN + + + W H
Sbjct: 434 CQAVSRLLEKNSYLRVLSLPNCDIGDEEVRMLALSIKANKNELPLESLQLSFNNITHHGLEAMANALWGSTTMRELKVDNNMIGDRGAHQMAAIIPAMKVIEVLDVGFNSITTPGLTILMKSVAESKKLLSLSLSGNAIDATAAKSVAYALAY-NCSLKSIFLVHCSIGHEEQRHIAAGIVSNSRTALDRLNGFEIGSILLTLGFPEALKNWTNEQVFNFIHLMWDKH 660
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Match: A0A482T3A6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3A6_9ARCH) HSP 1 Score: 80.5 bits (197), Expect = 1.640e-12 Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 3
Query: 1908 ALPTLGLETVDVAFNNVGTAGVAALVQATVNSPCFTSLSLSGNALDAEAAKAIQAALAQPRCALRRLFLDHTSLGRASEGFIASGVLSNRSLALVTLTGFRLGSSFVRLGMPPQVESFTNGKALEQVRVYWRNH 2309
ALP + L+ +++AFN + + G+ A++ + S C L+LSGN +D + ++ A + L L++DHT+L + E I SG+ NR L LTG LG V+LG P Q+ +N AL + W H
Sbjct: 47 ALPHMQLQDLNIAFNEIDSEGLLAIINSVTQSVCLKVLTLSGNTIDNTVSVSV-AHMLSLNATLSALYIDHTNLTSSGEKIIGSGIARNRRGVLQLLTGMDLGKVLVQLGSPAQLGDMSNENALRYLAQIWAIH 179
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Match: A0A7S4EKP8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EKP8_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.460e-12 Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 3
Query: 1638 CXVASALVASNLILSDLHMSDNEIGDAGVEGLALALKRNTS---VRLLELCFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALPTLG-LETVDVAFNNVGTAGVAALVQATVNSPCFTSLSLSGNALDAEAAKAIQAALAQPRCALRRLFLDHTSLGRASEGFIASGVLSNRSLALVTLTGFRLG 2216
C S L+ N L L + + +IGD V LAL++K N + + L+L F + +P + +E +DV FN++ T G+ L+++ S SLSLSGNA+DA AAK++ ALA C+L+ +FL H S+G + IA+G++SN AL L GF +G
Sbjct: 360 CQAVSRLLEKNSYLRVLSLPNCDIGDEEVRMLALSIKANKNELPLESLQLSFNNITHHGLEAMANALWGSTTMRELKVDNNMIGDRGAHQMAAIIPAMKVIEVLDVGFNSITTPGLTILMKSVAESKKLLSLSLSGNAIDATAAKSVAYALAY-NCSLKSIFLVHCSIGHEEQRHIAAGIVSNSRTALDRLNGFEIG 555
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Match: A0A448YZK4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZK4_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 7.130e-12 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 3
Query: 1968 GVAALVQATVNSPCFTSLSLSGNALDAEAAKAIQAALAQPRCALRRLFLDHTSLGRASEGFIASGVLSNRSLALVTLTGFRLGSSFVRLGMPPQVESFTNGKALEQVRVYWRNH 2309
G+ L+++ S SLSLSGNA+DA AAK++ ALA C+LR LFL H S+G + IA+G++SN L L GF +G + LG P ++++TN + + + + W H
Sbjct: 502 GLTVLMKSVAESKMLLSLSLSGNAIDATAAKSVAYALAY-NCSLRSLFLVHCSIGHEEQRHIAAGIVSNSRTKLDQLNGFEIGPILLTLGFPEPLKNWTNEQVFKFIHLMWNKH 614
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Match: A0A7S4QPC4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QPC4_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.150e-7 Identity = 40/130 (30.77%), Postives = 71/130 (54.62%), Query Frame = 3
Query: 1911 LPTLGLETVDVAFNNVGTAGVAALVQATVNSPCFTSLSLSGNALDAEAAKAIQAALAQPRCALRRLFLDHTSLGRASEGFIASGVLSNRSLALVTLTGFRLGSSFVRLGMPPQVESFTNGKALEQVRVYW 2300
L ++ LE +D+ FN + T G+ AL+++ + SL+LSGN +D+ S+G A++ I +G++SN L+L +TGF +G+ V LG+P +E++TN + L+ +R+ W
Sbjct: 25 LTSVKLEVLDLGFNRITTGGIKALMKSLAENDTLLSLTLSGNPXXXXXXXXXXXXXXXXXX-XXXXXVDNCSVGYAAQRHITAGIVSNSQLSLRVITGFHIGAIAVTLGLPSALENWTNEQVLKFIRLMW 153
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Match: A0A1E7FR04_9STRA (RNI-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR04_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.400e-7 Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query: 1911 LPTLGL-ETVDVAFNNVGTAGVAALVQATVNSPCFTSLSLSGNALDAEAAKAIQAALAQPRCALRRLFLDHTSLGRASEGFIASGVLSNRSLALVTLTGF 2207
+PT+ + + +DV FN + +G+ L++ S SLS+SGNA+D+ AAK++ ALA C+L+ +FL H S+G IA+G++SN +L +TGF
Sbjct: 238 IPTMKVFKILDVGFNKITASGLTVLMKTIAESQTLESLSVSGNAIDSNAAKSVAFALAY-NCSLQSIFLIHCSIGHEELRHIAAGIVSNSRTSLHRMTGF 336 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.259.1 >prot_P-fluviatile_contig1.259.1 ID=prot_P-fluviatile_contig1.259.1|Name=mRNA_P-fluviatile_contig1.259.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1191bp MHQHPVFLGIASVRETSVMSGKMPWGWPGGNGGSGGGEDRQPSNQFDTAQback to top mRNA from alignment at P-fluviatile_contig1:3177724..3190811- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig1.259.1 ID=mRNA_P-fluviatile_contig1.259.1|Name=mRNA_P-fluviatile_contig1.259.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=13088bp|location=Sequence derived from alignment at P-fluviatile_contig1:3177724..3190811- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig1:3177724..3190811- >mRNA_P-fluviatile_contig1.259.1 ID=mRNA_P-fluviatile_contig1.259.1|Name=mRNA_P-fluviatile_contig1.259.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=7146bp|location=Sequence derived from alignment at P-fluviatile_contig1:3177724..3190811- (Porterinema fluviatile SAG_2381)back to top |