mRNA_P-fluviatile_contig18.3136.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3136.1
Unique NamemRNA_P-fluviatile_contig18.3136.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig18.3136.1 vs. uniprot
Match: D7G7T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T2_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 1.860e-60
Identity = 113/185 (61.08%), Postives = 133/185 (71.89%), Query Frame = 1 
Query:   40 MMLLTEENSTSGTIYRRAFLLALLSTMPQLGAGFTAAAATTAAEVAATCNFNLFKARYPLEGGPPQVKLHVAIIVEDTTRGLNKG---------SGRR-VLFDFLPEEPTALPTALRLLTGQDVQGNLRERELRFLPPGSVCVGKSSATLQEMKDFVAEYPDRLSLISNNCFSFVDAFVERHRLE 564
            M++L +  +     +  A LL LLS++ QLG  F +A    A    +  NF +FKARYPLEGGPPQVKLH+AIIVED+     KG         +GRR VLFDFLP+EPTA  T LRLLTG DV GNLRERELRFLPPGSV VG+S AT+ +M+ FVA+YPDRLSL+SNNCFSFVDAFV RHRLE
Sbjct:    1 MVILGQRAAALAGPWHAALLLLLLSSLRQLG--FCSALLGVAPPHRS--NFKMFKARYPLEGGPPQVKLHIAIIVEDSRSTGEKGGRPNSEDRDTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYVGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7T2_ECTSI1.860e-6061.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:314345..315265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_000390.1
Exons1
Model size921
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3136.1prot_P-fluviatile_contig18.3136.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 314384..314941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.7441838-UTR-P-fluviatile_contig18:314344..3143831622815752.7441838-UTR-P-fluviatile_contig18:314344..314383Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 314345..314383 +
1693563188.269547-UTR-P-fluviatile_contig18:314344..3143831693563188.269547-UTR-P-fluviatile_contig18:314344..314383Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 314345..314383 +
1622815752.7644484-UTR-P-fluviatile_contig18:314941..3152651622815752.7644484-UTR-P-fluviatile_contig18:314941..315265Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 314942..315265 +
1693563188.283917-UTR-P-fluviatile_contig18:314941..3152651693563188.283917-UTR-P-fluviatile_contig18:314941..315265Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 314942..315265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815752.7546113-CDS-P-fluviatile_contig18:314383..3149411622815752.7546113-CDS-P-fluviatile_contig18:314383..314941Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 314384..314941 +
1693563188.2768314-CDS-P-fluviatile_contig18:314383..3149411693563188.2768314-CDS-P-fluviatile_contig18:314383..314941Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 314384..314941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3136.1

>prot_P-fluviatile_contig18.3136.1 ID=prot_P-fluviatile_contig18.3136.1|Name=mRNA_P-fluviatile_contig18.3136.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=186bp
MMLLTEENSTSGTIYRRAFLLALLSTMPQLGAGFTAAAATTAAEVAATCN
FNLFKARYPLEGGPPQVKLHVAIIVEDTTRGLNKGSGRRVLFDFLPEEPT
ALPTALRLLTGQDVQGNLRERELRFLPPGSVCVGKSSATLQEMKDFVAEY
PDRLSLISNNCFSFVDAFVERHRLEEEEEGLRAAC*
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mRNA from alignment at P-fluviatile_contig18:314345..315265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3136.1 ID=mRNA_P-fluviatile_contig18.3136.1|Name=mRNA_P-fluviatile_contig18.3136.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=921bp|location=Sequence derived from alignment at P-fluviatile_contig18:314345..315265+ (Porterinema fluviatile SAG_2381)
TGACTCCGTACACAACACCCTCCCTAGGTACTTATCCCGATGATGCTGCT
CACGGAGGAAAACTCGACCTCGGGGACGATCTATCGGCGTGCATTTCTCC
TGGCTCTGCTTTCAACTATGCCGCAATTAGGTGCGGGGTTCACGGCGGCG
GCAGCAACGACGGCAGCCGAAGTGGCGGCGACGTGCAATTTCAATTTGTT
CAAGGCTAGATACCCCCTGGAGGGGGGACCACCGCAGGTCAAACTACACG
TCGCTATCATCGTCGAAGATACGACGAGAGGTCTGAACAAGGGCAGCGGC
CGGCGGGTTTTGTTCGATTTTCTGCCGGAGGAGCCCACCGCTTTGCCTAC
CGCCCTTAGACTGCTCACGGGCCAAGACGTCCAGGGGAACTTGCGAGAGC
GAGAGCTCCGATTTTTGCCTCCCGGGTCGGTATGCGTGGGGAAGAGCAGC
GCAACCTTGCAGGAGATGAAAGATTTCGTCGCAGAGTATCCCGACCGACT
GTCGCTGATTTCGAATAATTGCTTCTCGTTTGTCGATGCGTTTGTTGAGA
GGCATCGCCTTGAGGAGGAGGAGGAGGGGCTGAGGGCGGCGTGTTAGGTC
CAGGAACGTCACTCGAGTCCATTGCATTGATAGAGGCTGCTCGTCAGACT
GTCTTGCTGAGCTAAAACAAGTGCGAGGAAGCGACGAAGGCTCCGTTCAA
CAAAGGGCGCTGGAGTTAACACTTACATTCGCTGGTTGGTGTTGGTGATT
GGACGATGGCATACATATCGAGAACGAGGCACCTCAGACAGGTTCGACCG
TCAGAAGCCTGTGACTTGCATGGTGACGTTGATGTCATGACTCGATCCAG
CGACCCAGTGCAGATCAGGATTGACCTTTGCACAAGGCGTCGACATCCAA
AGTATGATCACTTCCCTCGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:314345..315265+

>mRNA_P-fluviatile_contig18.3136.1 ID=mRNA_P-fluviatile_contig18.3136.1|Name=mRNA_P-fluviatile_contig18.3136.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1116bp|location=Sequence derived from alignment at P-fluviatile_contig18:314345..315265+ (Porterinema fluviatile SAG_2381)
ATGATGCTGCTCACGGAGGAAAACTCGACCTCGGGGACGATCTATCGGCG
TGCATTTCTCCTGGCTCTGCTTTCAACTATGCCGCAATTAGGTGCGGGGT
TCACGGCGGCGGCAGCAACGACGGCAGCCGAAGTGGCGGCGACGTGCAAT
TTCAATTTGTTCAAGGCTAGATACCCCCTGGAGGGGGGACCACCGCAGGT
CAAACTACACGTCGCTATCATCGTCGAAGATACGACGAGAGGTCTGAACA
AGGGCAGCGGCCGGCGGGTTTTGTTCGATTTTCTGCCGGAGGAGCCCACC
GCTTTGCCTACCGCCCTTAGACTGCTCACGGGCCAAGACGTCCAGGGGAA
CTTGCGAGAGCGAGAGCTCCGATTTTTGCCTCCCGGGTCGGTATGCGTGG
GGAAGAGCAGCGCAACCTTGCAGGAGATGAAAGATTTCGTCGCAGAGTAT
CCCGACCGACTGTCGCTGATTTCGAATAATTGCTTCTCGTTTGTCGATGC
GTTTGTTGAGAGGCATCGCCTTGAGGAGGAGGAGGAGGGGCTGAGGGCGG
CGTGTTAGATGATGCTGCTCACGGAGGAAAACTCGACCTCGGGGACGATC
TATCGGCGTGCATTTCTCCTGGCTCTGCTTTCAACTATGCCGCAATTAGG
TGCGGGGTTCACGGCGGCGGCAGCAACGACGGCAGCCGAAGTGGCGGCGA
CGTGCAATTTCAATTTGTTCAAGGCTAGATACCCCCTGGAGGGGGGACCA
CCGCAGGTCAAACTACACGTCGCTATCATCGTCGAAGATACGACGAGAGG
TCTGAACAAGGGCAGCGGCCGGCGGGTTTTGTTCGATTTTCTGCCGGAGG
AGCCCACCGCTTTGCCTACCGCCCTTAGACTGCTCACGGGCCAAGACGTC
CAGGGGAACTTGCGAGAGCGAGAGCTCCGATTTTTGCCTCCCGGGTCGGT
ATGCGTGGGGAAGAGCAGCGCAACCTTGCAGGAGATGAAAGATTTCGTCG
CAGAGTATCCCGACCGACTGTCGCTGATTTCGAATAATTGCTTCTCGTTT
GTCGATGCGTTTGTTGAGAGGCATCGCCTTGAGGAGGAGGAGGAGGGGCT
GAGGGCGGCGTGTTAG
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