mRNA_P-fluviatile_contig18.3356.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3356.1
Unique NamemRNA_P-fluviatile_contig18.3356.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig18.3356.1 vs. uniprot
Match: D7FPS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS2_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.960e-17
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 2 
Query:   41 PPPLRSLPLHIIVSVLQFAVPEILSLGEARVLCAGAASALACASFWRGMTVALDRDEGDVEPPTSS 238
            P P   LPLH++V+VLQFAVPE++SL EAR+LC GA+S+LA  SFWRGMTV L RDEG  EPP +S
Sbjct:    5 PSPSSRLPLHVVVTVLQFAVPEVVSLSEARLLCKGASSSLASPSFWRGMTVNLTRDEG-YEPPLNS 69
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPS2_ECTSI2.960e-1766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:2415373..2416273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.0596504-CDS-P-fluviatile_contig18:2415372..24155011622815748.0596504-CDS-P-fluviatile_contig18:2415372..2415501Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2415373..2415501 -
1693563178.650899-CDS-P-fluviatile_contig18:2415372..24155011693563178.650899-CDS-P-fluviatile_contig18:2415372..2415501Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2415373..2415501 -
1622815748.0712178-CDS-P-fluviatile_contig18:2416153..24162731622815748.0712178-CDS-P-fluviatile_contig18:2416153..2416273Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2416154..2416273 -
1693563178.6587121-CDS-P-fluviatile_contig18:2416153..24162731693563178.6587121-CDS-P-fluviatile_contig18:2416153..2416273Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 2416154..2416273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3356.1prot_P-fluviatile_contig18.3356.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 2415373..2416273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3356.1

>prot_P-fluviatile_contig18.3356.1 ID=prot_P-fluviatile_contig18.3356.1|Name=mRNA_P-fluviatile_contig18.3356.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=83bp
MFTLSLSLHGVVSSSSAEESSPPYYCLSLAVRCTRDIVAGGGPRPLRGGC
LRPRLRLLLARHDRRPRPRRGRRRAADFLFLLL
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mRNA from alignment at P-fluviatile_contig18:2415373..2416273-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3356.1 ID=mRNA_P-fluviatile_contig18.3356.1|Name=mRNA_P-fluviatile_contig18.3356.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=901bp|location=Sequence derived from alignment at P-fluviatile_contig18:2415373..2416273- (Porterinema fluviatile SAG_2381)
ATGTTCACTCTGTCTCTATCCCTCCATGGCGTTGTCTCATCCTCCTCCGC
TGAGGAGTCTTCCCCTCCATATTATTGTCTCAGTCTTGCAGTTCGCTGTA
CCCGAGATATTGTCGCTGGGGTGAGTCGCCAGCATGTGTGGCAGAGCACC
CTCATAACCCTCTACACATGACTTCCGACGGTCGACTTTACAACCGCCGA
GGGAGATCGGACGTGTTGGAAAGATTGAAGATTTTGTCTGTGGATGTGTT
GGAAAGATTTCGATCGATACGGAGCTATTTCAAATATGTGCTTACACCAC
GTAGTGATGTTGAGGTATACAGAGCGTTGAAAATCTGTGCAGCAAGGTCG
ATGCGAGTGTAATATGTTGTGTCACGCGGTCGCTGTGCATCAGCAGCCTG
CGTGATGATGGCATGTTGCGGTACATGTGTGCGTCATTCCTATTTCACTT
CACGTGTGTGTCGGCAGTGCTACTGCTTGTGGGTGTGCAGCATTAGCATC
GAAATTGAGTACTCTCCCTTGTCGTGCGGCGGTCGTAGACCATTTCACAC
ACAGTGGAAAAACGAATGTCCCATGTCTTCCAGGTAGTATGTGTAGTGTT
CACCCTGAGCAAAGACATTCCCTGCCGCACGCCGTTCCACTCCAACCCAC
TCCACCCCACCCTCCGCAATCCATCTCTCCGCGGCCGTGGAGGATGCGGT
CGCTTACCACCGCCGTTGACGCCTTCACACCCAACACACGTGAACTCTAT
CTTTGTCCTCGGCCACGCACAGGGAGGCCCGCGTCCTCTGCGCGGGGGCT
GCCTCCGCCCTCGCTTGCGCCTCCTTCTGGCGCGGCATGACCGTCGCCCT
AGACCGAGACGAGGGAGACGTCGAGCCGCCGACTTCCTCTTTCTCCTGCT
T
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:2415373..2416273-

>mRNA_P-fluviatile_contig18.3356.1 ID=mRNA_P-fluviatile_contig18.3356.1|Name=mRNA_P-fluviatile_contig18.3356.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=498bp|location=Sequence derived from alignment at P-fluviatile_contig18:2415373..2416273- (Porterinema fluviatile SAG_2381)
ATGTTCACTCTGTCTCTATCCCTCCATGGCGTTGTCTCATCCTCCTCCGC
TGAGGAGTCTTCCCCTCCATATTATTGTCTCAGTCTTGCAGTTCGCTGTA
CCCGAGATATTGTCGCTGGGATGTTCACTCTGTCTCTATCCCTCCATGGC
GTTGTCTCATCCTCCTCCGCTGAGGAGTCTTCCCCTCCATATTATTGTCT
CAGTCTTGCAGTTCGCTGTACCCGAGATATTGTCGCTGGGGGAGGCCCGC
GTCCTCTGCGCGGGGGCTGCCTCCGCCCTCGCTTGCGCCTCCTTCTGGCG
CGGCATGACCGTCGCCCTAGACCGAGACGAGGGAGACGTCGAGCCGCCGA
CTTCCTCTTTCTCCTGCTTGGAGGCCCGCGTCCTCTGCGCGGGGGCTGCC
TCCGCCCTCGCTTGCGCCTCCTTCTGGCGCGGCATGACCGTCGCCCTAGA
CCGAGACGAGGGAGACGTCGAGCCGCCGACTTCCTCTTTCTCCTGCTT
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