mRNA_P-fluviatile_contig18.3272.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3272.1
Unique NamemRNA_P-fluviatile_contig18.3272.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: D7FZ07_ECTSI (RanBP2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ07_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 9.680e-106
Identity = 188/219 (85.84%), Postives = 200/219 (91.32%), Query Frame = 1 
Query:   55 MADPAPYDPEAAAVPXXXXXXXXXXXXXXXXXXXXXXXVAIEGIAELDASLGRGAPVPPAGGGGKPLAK-EQKDFRGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAFGGGVLGGTSLAPTGKPPIPGQFDDASPAPSVTTYDQFGRPNLAG 708
            M++   YDP AAAVP    XXXXXXXXXXXXXXXXXXX  I GIAELDAS+GRGAPVPPAGGGGKPL K EQKDFRGPAGLFK+GDWTCT CGNVNWERR+TCNKC NPKPNLA+TDEAREGLGGGFNERQDRASVATVEVDEDG+DDFGRKKIKARADKKAKE+AALARL K+FGGG+LGGTSLAP GKPP+ GQFDDASPAPSVTTYD+FGRP LAG
Sbjct:    1 MSEGEAYDPAAAAVPAGGRXXXXXXXXXXXXXXXXXXXX-IAGIAELDASMGRGAPVPPAGGGGKPLLKKEQKDFRGPAGLFKKGDWTCTACGNVNWERRATCNKCNNPKPNLAATDEAREGLGGGFNERQDRASVATVEVDEDGFDDFGRKKIKARADKKAKEDAALARLRKSFGGGILGGTSLAPVGKPPVRGQFDDASPAPSVTTYDKFGRPRLAG 218
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: A0A6A3KYH4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KYH4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.970e-35
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:  220 PVPPAGGGGKPLAKEQKDFRGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAF 576
            P P   GG KP  K   DFRGP GLF+ GDW C  CGNVNWERR+ CN C++ KP +   DE R+G GGGFNERQ R + A  EV +DGYDDFG KK K +A K  +E AALARL +++
Sbjct:   39 PRPEGVGGEKPKPKGGVDFRGPPGLFQPGDWACNTCGNVNWERRNECNMCKSSKPGMTGLDEKRDGAGGGFNERQQRVASAKTEVGDDGYDDFGMKKKKVKASKAEREAAALARLQQSY 157
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: M4BNB3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BNB3_HYAAE)

HSP 1 Score: 143 bits (360), Expect = 3.110e-35
Identity = 67/114 (58.77%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:  235 GGGGKPLAKEQKDFRGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAF 576
            GG  KP +K   DFRGP GLF+ GDWTC  CGNVNWERRS CN C++ KP +   +E R+G GGGFNERQ+R + A  EV EDGYDDFG +K K +A K  +E AALARL +++
Sbjct:   36 GGSDKPKSKGGSDFRGPPGLFQPGDWTCNTCGNVNWERRSECNMCKSSKPGMPGLEERRDGAGGGFNERQERVASAKKEVGEDGYDDFGVRKKKVKASKAEREAAALARLQQSY 149
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: A0A6A3Y7K4_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Y7K4_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.420e-35
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:  220 PVPPAGGGGKPLAKEQKDFRGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAF 576
            P P   GG KP  K   DFRGP GLF+ GDW C  CGN+NWERR+ CN C++ KP +   DE R+G GGGFNERQ R + A  EV +DGYDDFG KK K +A K  +E AALARL +++
Sbjct:   40 PRPEGVGGEKPKPKGGADFRGPPGLFQPGDWACNTCGNINWERRNECNMCKSSKPGMTGLDEKRDGAGGGFNERQQRVASAKTEVGDDGYDDFGMKKKKVKASKAEREAAALARLQQSY 158
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: A0A7S2CIC2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIC2_9STRA)

HSP 1 Score: 139 bits (350), Expect = 7.260e-35
Identity = 69/103 (66.99%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:  271 DFRGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAFG 579
            D RGPAGLF   DW C  CGNVNW RRSTCN C   KP+LA  D+AREGLGGGF ERQ++AS++TVEV EDGYDDFGRK      DK AKE AALARL  ++G
Sbjct:   25 DHRGPAGLFVAADWDCPGCGNVNWARRSTCNMCNTKKPDLADPDDAREGLGGGFLERQEQASLSTVEVAEDGYDDFGRKIKSKNKDKAAKEAAALARLTASYG 127
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: G4Z0Q3_PHYSP (RanBP2-type domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z0Q3_PHYSP)

HSP 1 Score: 146 bits (369), Expect = 1.110e-34
Identity = 69/119 (57.98%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:  220 PVPPAGGGGKPLAKEQKDFRGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAF 576
            P P    G KP  K   DFRGP GLF+ GDWTC  CGNVNWERR+ CN C++ KP +A  DE R+G GGGFNERQ+R + A +EV EDGYDDFG +K K +A K  +E AALARL +++
Sbjct:  231 PRPEGASGEKPKPKGGADFRGPPGLFQPGDWTCNTCGNVNWERRNECNMCKSAKPGMAGLDEKRDGAGGGFNERQERVASAKMEVGEDGYDDFGMRKKKVKASKAEREAAALARLQQSY 349
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: A0A3M6V943_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V943_9STRA)

HSP 1 Score: 141 bits (355), Expect = 7.820e-34
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:  220 PVPPAGGGGKPLAKEQKDFRGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAF 576
            P P   GG K   KE  D RGP GLF+ GDWTC  CGN+NWERRS CN C++ KP +   DE R+G GGGFNERQ R + A  EV EDGYDDFG +K K +A K  +E AALARL +++
Sbjct:   74 PRPEVIGGDKSKPKEGTDLRGPPGLFQSGDWTCITCGNINWERRSECNMCKSSKPGMPGLDEKRDGAGGGFNERQQRVASAKKEVGEDGYDDFGVRKKKVKASKAEREAAALARLQQSY 192
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: A0A4D9D5Z5_9STRA (RanBP2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Z5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 9.860e-34
Identity = 68/109 (62.39%), Postives = 80/109 (73.39%), Query Frame = 1 
Query:  259 KEQKDF-RGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVA-TVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAFG 579
            +E+ DF +GP GLFK  DW C  CGNVNWERR  CN C   KP LA + EAREGLGGGF ERQ+R +++  VEV EDG+DDFGRKK K + D+KAKE AALARL   +G
Sbjct:   92 REEMDFSKGPPGLFKASDWNCPSCGNVNWERREFCNMCGGKKPTLAGSGEAREGLGGGFLERQERGAISQAVEVGEDGFDDFGRKKAKEKVDRKAKEMAALARLKATYG 200
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: A0A2D4BNT7_PYTIN (Katanin p60 ATPase-containing subunit, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNT7_PYTIN)

HSP 1 Score: 144 bits (362), Expect = 1.290e-32
Identity = 72/130 (55.38%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:  277 RGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAFGGGVLGGTSLAPTGKPPIPGQFDDASPAPS 666
            RGP GLFK  DWTC +CGNVNWERRS CN C++PKP +   DE R+G GGGFNERQ+R + A  EVDEDGYDDFG KK K +A +  +E AALARL + +   ++G     PTG   +P    +  PAPS
Sbjct:  535 RGPPGLFKSTDWTCVICGNVNWERRSECNICKSPKPGMPGLDEKRDGAGGGFNERQERVASAKTEVDEDGYDDFGMKKKKVKASRAEREAAALARLKQTYSA-IIG-----PTGDSMLPTSIANVPPAPS 658
[Close]
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Match: F0WQ51_9STRA (2-(3-amino-3-carboxypropyl)histidine synthase subunit 1 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WQ51_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.120e-32
Identity = 65/102 (63.73%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:  271 DFRGPAGLFKQGDWTCTVCGNVNWERRSTCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGRKKIKARADKKAKENAALARLHKAF 576
            DFRGP GLFK GDWTCTVCGNVNWERR  CN C+N KP +   DE R+G+ GGFNERQ+R + A  E+ EDGYDDFG KK K  A K  +E AALARL +++
Sbjct:   64 DFRGPPGLFKPGDWTCTVCGNVNWERRQECNICKNAKPGMPGVDERRDGVAGGFNERQERVASAKAEIGEDGYDDFGMKKKKINASKTQREAAALARLQQSY 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ07_ECTSI9.680e-10685.84RanBP2-type domain-containing protein n=2 Tax=Ecto... [more]
A0A6A3KYH4_9STRA2.970e-3557.14Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
M4BNB3_HYAAE3.110e-3558.77Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6A3Y7K4_9STRA5.420e-3556.30Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A7S2CIC2_9STRA7.260e-3566.99Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
G4Z0Q3_PHYSP1.110e-3457.98RanBP2-type domain-containing protein n=1 Tax=Phyt... [more]
A0A3M6V943_9STRA7.820e-3457.14Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A4D9D5Z5_9STRA9.860e-3462.39RanBP2-type domain-containing protein n=1 Tax=Nann... [more]
A0A2D4BNT7_PYTIN1.290e-3255.38Katanin p60 ATPase-containing subunit, putative (F... [more]
F0WQ51_9STRA3.120e-3263.732-(3-amino-3-carboxypropyl)histidine synthase subu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:1649075..1654840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.2
Seed ortholog evalue1.3e-88
Seed eggNOG ortholog2880.D7FZ07
KEGG koko:K13098,ko:K14651
KEGG Pathwayko03022,ko05202,map03022,map05202
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006366,GO:0006367,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023051,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1901796,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.RNA binding
EggNOG OGsKOG1995@1,KOG1995@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-06_002040.1
Exons5
Model size1727
Cds size933
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.6892722-UTR-P-fluviatile_contig18:1649074..16498141622815746.6892722-UTR-P-fluviatile_contig18:1649074..1649814Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1649075..1649814 -
1693563174.9445212-UTR-P-fluviatile_contig18:1649074..16498141693563174.9445212-UTR-P-fluviatile_contig18:1649074..1649814Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1649075..1649814 -
1622815746.7510042-UTR-P-fluviatile_contig18:1654786..16548401622815746.7510042-UTR-P-fluviatile_contig18:1654786..1654840Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1654787..1654840 -
1693563175.0056064-UTR-P-fluviatile_contig18:1654786..16548401693563175.0056064-UTR-P-fluviatile_contig18:1654786..1654840Porterinema fluviatile SAG_2381UTRP-fluviatile_contig18 1654787..1654840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.7002738-CDS-P-fluviatile_contig18:1649814..16498871622815746.7002738-CDS-P-fluviatile_contig18:1649814..1649887Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1649815..1649887 -
1693563174.9573102-CDS-P-fluviatile_contig18:1649814..16498871693563174.9573102-CDS-P-fluviatile_contig18:1649814..1649887Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1649815..1649887 -
1622815746.711585-CDS-P-fluviatile_contig18:1650618..16507231622815746.711585-CDS-P-fluviatile_contig18:1650618..1650723Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1650619..1650723 -
1693563174.9688988-CDS-P-fluviatile_contig18:1650618..16507231693563174.9688988-CDS-P-fluviatile_contig18:1650618..1650723Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1650619..1650723 -
1622815746.722208-CDS-P-fluviatile_contig18:1651927..16521931622815746.722208-CDS-P-fluviatile_contig18:1651927..1652193Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1651928..1652193 -
1693563174.9793613-CDS-P-fluviatile_contig18:1651927..16521931693563174.9793613-CDS-P-fluviatile_contig18:1651927..1652193Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1651928..1652193 -
1622815746.7320793-CDS-P-fluviatile_contig18:1652664..16528021622815746.7320793-CDS-P-fluviatile_contig18:1652664..1652802Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1652665..1652802 -
1693563174.9880831-CDS-P-fluviatile_contig18:1652664..16528021693563174.9880831-CDS-P-fluviatile_contig18:1652664..1652802Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1652665..1652802 -
1622815746.7416017-CDS-P-fluviatile_contig18:1654435..16547861622815746.7416017-CDS-P-fluviatile_contig18:1654435..1654786Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1654436..1654786 -
1693563174.9968557-CDS-P-fluviatile_contig18:1654435..16547861693563174.9968557-CDS-P-fluviatile_contig18:1654435..1654786Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 1654436..1654786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3272.1prot_P-fluviatile_contig18.3272.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 1649815..1654786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3272.1

>prot_P-fluviatile_contig18.3272.1 ID=prot_P-fluviatile_contig18.3272.1|Name=mRNA_P-fluviatile_contig18.3272.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=311bp
MADPAPYDPEAAAVPAPAAAAGSGGRGRGRGRGRGGGGVAIEGIAELDAS
LGRGAPVPPAGGGGKPLAKEQKDFRGPAGLFKQGDWTCTVCGNVNWERRS
TCNKCQNPKPNLASTDEAREGLGGGFNERQDRASVATVEVDEDGYDDFGR
KKIKARADKKAKENAALARLHKAFGGGVLGGTSLAPTGKPPIPGQFDDAS
PAPSVTTYDQFGRPNLAGSSSRSGGDGGGGNRDTSASSGGGMNGRGGDGR
DRDRNGDKDRRDSDRVRGGGEKDRRRGGRSRSRSKERSSRDEKDRSRRRR
SRSRSRDRRR*
back to top

mRNA from alignment at P-fluviatile_contig18:1649075..1654840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3272.1 ID=mRNA_P-fluviatile_contig18.3272.1|Name=mRNA_P-fluviatile_contig18.3272.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5766bp|location=Sequence derived from alignment at P-fluviatile_contig18:1649075..1654840- (Porterinema fluviatile SAG_2381)
ACGCATATCCTGTGGACCGGCCAACGCGAGACTCCCGCTCGAAAAGCACA
AAGGATGGCGGATCCGGCACCCTACGATCCAGAGGCTGCTGCTGTCCCTG
CCCCAGCCGCGGCTGCCGGCAGCGGCGGCAGGGGGAGAGGAAGAGGGAGA
GGGAGGGGTGGAGGAGGCGTCGCAATCGAAGGAATCGCGGAGCTCGACGC
CAGCCTGGGCAGGGGAGCTCCCGTCCCCCCCGCAGGGGGCGGCGGGAAGC
CTCTCGCCAAGGAGCAAAAGGACTTTCGCGGGCCAGCGGGGCTGTTCAAG
CAGGGCGACTGGACGTGCACGGTGTGCGGGAACGTGAACTGGGAGCGCCG
GTCGACGTGCAACAAGTGCCAGAACCCGAAGCCCAACCTTGCCAGCACGG
ACGAGGTGTGCGTGTGCATTTTCGTGTGTGTTCGTGTGTGTGCTTGGCCA
GGGATAGTGTTACAGTGTACTATTAATGGGAAGGAGGGGCTGTCTTGCAA
TCTTTCGGCAACAGTCAGCGTCGCCTCGCCTCGCCCGGCCGGTGCGTACT
CTGCGCAGCGTACGTGCAGTCCACGTTGCATGTATCAGCAACGTTTGCTT
CCGTTTGAGCACTGATTGGTGTCCGGCCGTGCGTCTTGCTTTCTGTCTCT
CGTGAAAGAGGATTTACGGTTCAAGAATGCGCAAGATACCACACCGCGTG
GGTCAAGTGCCGCAGCTCATTTCCTCAACAGCAGCTAGTCTATAAGGTTA
CCAAAACAATACGGAACGATGCGTCATTACAAAGCTCTCAGCATGATATT
TCGAAGTGTGCCTTACTTGACGCCAATCCCTCTCTCATCGCCAATATATA
GATCGCCCCTTGGAAATCGGCGGAGGGGATTTTGTGCAATCTCTACTGCT
CACGGGTTTGATTTCCGCCGCCCTCCGCGTACCGCTTTCTTTCCTGCCAA
GCTCAAGAATTTATTGTGACAGGGCTTACTACCTTTTTCCAAAAGCCACA
ACAGTAGGCCACGGTGCCCGACGTAGTCAAAGCTGGAAGGGTGCTGCCTG
CTACACATGTTTGCACGTCGAGTTGGGCTGCGTTCTGAAATTGTTTCGCA
CTTTCCCTTGCCCGACAGTCGTCGAAAGTCACGGTTGCCCTCTCAACCTC
CCTCGAGATGAAGGCGGCGGAATGGTAAACTATCTTGATTGAAGCACGTA
GTAGGGTGTACTAACAGTACTTTCTTGTTGCAGCACGTGGCAGGGTGCGC
AAAAAGTACTTTGGATTTGGATTCGTTTGTTCATTTTTTTTCGCCGTCTT
GCCAGGCTACGGAAACGCACGCAAAATCTCGATTTTGTCAAGCCTGTTGC
CGTCGCTCACCACACCCGAACGACTTCCGGATTGTAATCGTAGACGATTG
CGAAAACATCGTAGCGTGAACCGAGATCGTCGTGGAGTTTGACGACACGA
CTTGGCCCACCATGCCCCGGTCTATCCGCGGCTCTCCCTCCGCCCCGTCG
TGCGATGTTTCCATCAAGGCTAATTTTCAGCCCGTCCAAGTCAGCAGGTA
GTAAGTAGGACGCTGCAGGAGTCGGGGTGTAGGCCACAGGGACTTCAGAA
AAACACGGTGCATGAAGCATACTCGGCCGAGGCTAATTTGCTCCCCGCAG
CCATTTTTGGGACATTGCCTTCTCACCATTCCTGACTTGAATCGATGGCT
TGGCAATACCTAGGAGAAGAGTTGGCACGCCCCACGATCGCCACCGAAAC
GTACGTAGTGCCTACCACATGTCCTTCTCTTCATCAAATATCAAAACCAA
GGAAGCAGAATCCACGGCGTTTCCCATGCAGAGTCCCCTCCCAGAAAGGT
CTCCGCCGAACTTCCTTTGACTCCCCACCCTCGAGCGCCCCATTCCTTCG
CAGTGACAGATTCGCAAAAGGCAGAATTCAAACAGCGCCCCATGCAGAGC
CATCTCCCAGAGAAATCTTCGAAGATATTTTCTTTCGCCACGCGCCACCC
TCCCACTCCTTCGCTCGCCTCTTGGCTGCTGCTGTCAGGCTCGAGAGGGG
CTCGGTGGCGGTTTCAACGAGCGACAGGACCGAGCCTCGGTGGCAACCGT
GGAGGTGGACGAGGACGGCTACGACGACTTCGGGCGGAAGAAGATCAAGG
CCCGGGCCGACAAGAAGGCCAAGGAAGTGAGCTAACGAGCCGAAAGTGGA
ACAGAGTCGAGTCGTACACCAAGTCGATTCGGACAGGGTCTACTCAGATC
GAGTACGGGGTCGAATTGATGTGTCCGGCACCCTTTCCTCGATATGGCCC
CAGGGGATCACACCGTGATGTCAATTTTATCTCTTGAGTTTATCCGGGAC
CAGGACGTGAAACAGATACCGTAATTTTTGGCTTCAAAATGCGAAAAATA
TTAAAATATGCAACGTTCCCCCGTTCTGCAACGACCTCTCTTGCCGCGAA
AAGGCACCAGTATAAGCTTGTCTGCAAGGGTACAAATGTGTTTGCGCGAG
CCGCCTCCAACGTTCCGACGGTCCCAGCGTCCCCCTTCCGGCACCCGAGC
AAACCTTTTCCGACTCCGCCACCCCCGCTTTACCCTGGCTCATAAATTAC
AACAACAAACTCAACTCTCTCCTTCACACACGCACACGCAAACACAGAAC
GCGGCCCTTGCGCGCCTCCACAAGGCGTTCGGGGGCGGGGTGCTGGGCGG
GACGAGCCTGGCCCCTACCGGAAAGCCGCCGATTCCGGGGCAGTTCGACG
ACGCGTCGCCGGCGCCGTCGGTCACCACCTACGATCAGTTCGGCCGCCCC
AATCTCGCGGGTTCCTCCTCGCGGAGCGGTGGCGATGGCGGTGGCGGTAA
CAGAGATACATCGGCGAGCAGCGGCGGAGGAATGAATGGGCGTGGCGGGG
ACGGCAGAGACAGGTGGGGTGGTGGATGCCCGCACTCCCGATTTGTCGCC
GAAGTATTTTACGACGGCCTGTAGCTTTCACCACCTGGGCACGCTACTTG
GGTACGTTCATCTGTGCGTGTTTGTGTGTGCCTTATTGGACGGGGCGGGG
GGAGGCGGGGTGTACTCATAGTCGTGCATGCCGTAGTAGTTAGACCATTG
ACCTCGCATTTCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGA
TCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGGTATTCGGCGAGT
CGCATGAAGGGTGCGCTGCATCCTGCTCAGGATGTTCGGCATCTTGTGCT
TACTTCCTTGCAAACGGATGACAGCTGCGTATGGCTTAATTTATTTTCTG
ATGCTTTCACTTCCAGAGACAGTTGTAAGCACTGTGTAACTGCCTCGAGG
GTGCTTGACCATTTTAACACAACGTGGTGCGATCATCCCTCTTGCGCGGA
GTGAGGGTTCTCCACCCCTCATAACATGATCTACTCGACCACCATTATGG
TCACCGCCAAAAAAAAACAGAGGAAACAAAAATACGGTAACCTGGTTGCC
GAGTTCACGAAGTGAATTGGCTTGTTTTACAACGTCGTTGCCAAGCGACG
AAAACCCAATCCCGATGGCAGACACCGAAGTGAGAGCCAGCGCGAGGGGG
AGGGGGGTGTCAAGTGGACGGCGGGCAGGGGCGGGTCGATATTGTCGCTA
CTTAAATAGCAGAACAAGAGATCTCGTTGGCGTCTGCGCCTTTCTTGTCA
CTTTTTGCTCGATCGAACGGACGAGGGGGCAACGCGGTACCCATCTTCGA
AAGCGTTTCACGGGACGCCACGGTGGGAGAGCCGTAGCCGCGAGCGAGCA
CGGAAGATGTTCAACATTGGCTTCAGACCGATGTGTGCGTGTTCGTTGTC
TCCTCTGGTTAGTACAAGCCGAGTTCGAGAATGTGCGTTTTTGAAGTGGT
CACGGGATGTGTCCGCCGAGACCGAGCGGCGACCAATAGCTAACCCGGCC
CTAAACCCTATCCCCAAGCCATCTGATGCCCACAGTATCCTGTTTGTGTT
CCTACACCTGGCCCGTCGAGCCGTTCCTCGACGTGTGATCGAATTCTTCT
CCGCGCGCACGGCTCTGTATTAACGTGTCGCGTCGGGCCCCGTGGATGAA
AATTTGGACGGCCCAAGGGATAGGAATGGGGACAAGGATAGGCGAGACAG
CGACCGCGTCCGAGGAGGAGGGGAGAAGGACCGGCGAAGAGGCGGGAGGA
GCAGAAGCAGGAGTAAAGAGCGGTGAGAGAGAGCTCACATGACCGGTTGT
CCCCTCTGTGCGCGGTATTATGACAGCCCTGGTAGGCACGATTGCGATTC
AGCTGAGAGGACGCTCCTCTGTAAATACCCGCGCGGATGTGAAACAGGTG
CGCTCATGGCGCTGTGCTGCGTGCTTGTTTGCCTCAGTGTTCATCTGCTC
GCGGCGATGAAAGGGAAAGGAGGGGAGGGAGGGGGGGGAGGGGGGCTGAG
CGAAGTCTTCTTCCACTTGGAGGCGCTCCTCTGCCACCAGCTCTGCTTGC
ACCAATTGATAAAGCAATCAAGCACGACATCCTTGGAAGTAGAAAGCAGA
AGATGTCAATGAAAGGCCACAGTTTCCCCTCTCCGTCCCCCTGTCCCACC
TCTCGTCGCCCTATACTAGCGGCAGGTCAAAGGACCGGCAGACCGAACTT
TCTATTTGCCTTTCCTCATTTTTTTTCGCCTTCCTACGCGTGTGTGCGCC
CCGTCTTGCGCCAGCAAATAACACCATCCCCCACGCTGACACACGCGTAG
CTTCCAACCTCGAGCGTGACGTGAGATGTCAGTCTCTAGCAGCCGACGAG
ATTGTTTCACGCGGTGGCTGGGCATAGTTAGTTGGTCGGAGGACAAACGA
GCGCAGAACCCCCCCGTTTTCATGCGCTTGTCTTCACAAGATCACGCACT
CTCGCGGCGTCCCCCCCGCTTTCAATCGTAACACCATTCCGATGGCACAA
TAGGAGCAGCAGGGACGAGAAAGACAGGTCGAGGAGGAGGCGCAGTCGTT
CAAGGAGCCGAGACCGTCGTCGCTGAGATGTCGTTTTGAGTCGAGGGGCG
ACGTCTTAGCACACGGTGAAATCGGCGGGCCCAAGGAACGAGCGTCATCC
ATAGTGTCAAGAGCTTGTACTGTTATCTTGCCCGGCCAGGAATGATGGGC
CGACGGGAGACGCGGCGACGGCCGTTTCAGAGCGGCGGGTGCGTCGACTG
CTCGTTTGCGAAGAGGACTAAGGGCCACGAAACGAAGCATGAAGCGGTGA
TCGACATTTATTTCTGCACGTGGCCCACACGCTGTTCCTTGAAGCTATCA
CTGCAAATGTTTTGAATGTTCTCCATTGCTGTGTGAAGGGAGTGGAGGAG
TTTTTTCGGGCGCGGCACCGTGCACGTTGCGATTTTAATTAAGGTTTGCA
TCATTTCCAGGCTGGACAGGTGGCGATATCCTGCCGTCGCCGAAGTCGCG
TCGTGTTGCTTTGGTGCCCTGTAGGTGAAGAGTCATTCCACACAGGCAAC
GAGACACACGCCTCCTCCAGCGGAAGGAATGTTGATCACAAGTTGATGAC
ACAAGGGGATCGAAAACTACACCCGATTCTTGGATTCTGCGGGCCAACTA
TTGGGATTAGAGCTTTGGGGGTATACGGAGTAATTGGCTTCCGGCGACGC
GAAGGGAACAGTTCGACCAATCAAATCGTTTCAGAATTCTCCTCGCTTTC
ATGGACTCCCCTCCCGTTGCTCCCGCAAAAGCCGGAAAAACAGCCGAACT
TTATGTGACGTGAAAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig18:1649075..1654840-

>mRNA_P-fluviatile_contig18.3272.1 ID=mRNA_P-fluviatile_contig18.3272.1|Name=mRNA_P-fluviatile_contig18.3272.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1866bp|location=Sequence derived from alignment at P-fluviatile_contig18:1649075..1654840- (Porterinema fluviatile SAG_2381)
ATGGCGGATCCGGCACCCTACGATCCAGAGGCTGCTGCTGTCCCTGCCCC
AGCCGCGGCTGCCGGCAGCGGCGGCAGGGGGAGAGGAAGAGGGAGAGGGA
GGGGTGGAGGAGGCGTCGCAATCGAAGGAATCGCGGAGCTCGACGCCAGC
CTGGGCAGGGGAGCTCCCGTCCCCCCCGCAGGGGGCGGCGGGAAGCCTCT
CGCCAAGGAGCAAAAGGACTTTCGCGGGCCAGCGGGGCTGTTCAAGCAGG
GCGACTGGACGTGCACGGTGTGCGGGAACGTGAACTGGGAGCGCCGGTCG
ACGTGCAACAAGTGCCAGAACCCGAAGCCCAACCTTGCCAGCACGGACGA
GATGGCGGATCCGGCACCCTACGATCCAGAGGCTGCTGCTGTCCCTGCCC
CAGCCGCGGCTGCCGGCAGCGGCGGCAGGGGGAGAGGAAGAGGGAGAGGG
AGGGGTGGAGGAGGCGTCGCAATCGAAGGAATCGCGGAGCTCGACGCCAG
CCTGGGCAGGGGAGCTCCCGTCCCCCCCGCAGGGGGCGGCGGGAAGCCTC
TCGCCAAGGAGCAAAAGGACTTTCGCGGGCCAGCGGGGCTGTTCAAGCAG
GGCGACTGGACGTGCACGGTGTGCGGGAACGTGAACTGGGAGCGCCGGTC
GACGTGCAACAAGTGCCAGAACCCGAAGCCCAACCTTGCCAGCACGGACG
AGGCTCGAGAGGGGCTCGGTGGCGGTTTCAACGAGCGACAGGACCGAGCC
TCGGTGGCAACCGTGGAGGTGGACGAGGACGGCTACGACGACTTCGGGCG
GAAGAAGATCAAGGCCCGGGCCGACAAGAAGGCCAAGGAAGCTCGAGAGG
GGCTCGGTGGCGGTTTCAACGAGCGACAGGACCGAGCCTCGGTGGCAACC
GTGGAGGTGGACGAGGACGGCTACGACGACTTCGGGCGGAAGAAGATCAA
GGCCCGGGCCGACAAGAAGGCCAAGGAAAACGCGGCCCTTGCGCGCCTCC
ACAAGGCGTTCGGGGGCGGGGTGCTGGGCGGGACGAGCCTGGCCCCTACC
GGAAAGCCGCCGATTCCGGGGCAGTTCGACGACGCGTCGCCGGCGCCGTC
GGTCACCACCTACGATCAGTTCGGCCGCCCCAATCTCGCGGGTTCCTCCT
CGCGGAGCGGTGGCGATGGCGGTGGCGGTAACAGAGATACATCGGCGAGC
AGCGGCGGAGGAATGAATGGGCGTGGCGGGGACGGCAGAGACAGAACGCG
GCCCTTGCGCGCCTCCACAAGGCGTTCGGGGGCGGGGTGCTGGGCGGGAC
GAGCCTGGCCCCTACCGGAAAGCCGCCGATTCCGGGGCAGTTCGACGACG
CGTCGCCGGCGCCGTCGGTCACCACCTACGATCAGTTCGGCCGCCCCAAT
CTCGCGGGTTCCTCCTCGCGGAGCGGTGGCGATGGCGGTGGCGGTAACAG
AGATACATCGGCGAGCAGCGGCGGAGGAATGAATGGGCGTGGCGGGGACG
GCAGAGACAGGGATAGGAATGGGGACAAGGATAGGCGAGACAGCGACCGC
GTCCGAGGAGGAGGGGAGAAGGACCGGCGAAGAGGCGGGAGGAGCAGAAG
CAGGAGTAAAGAGCGGGATAGGAATGGGGACAAGGATAGGCGAGACAGCG
ACCGCGTCCGAGGAGGAGGGGAGAAGGACCGGCGAAGAGGCGGGAGGAGC
AGAAGCAGGAGTAAAGAGCGGAGCAGCAGGGACGAGAAAGACAGGTCGAG
GAGGAGGCGCAGTCGTTCAAGGAGCCGAGACCGTCGTCGCTGAGAGCAGC
AGGGACGAGAAAGACAGGTCGAGGAGGAGGCGCAGTCGTTCAAGGAGCCG
AGACCGTCGTCGCTGA
back to top