mRNA_P-fluviatile_contig18.3100.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig18.3100.1
Unique NamemRNA_P-fluviatile_contig18.3100.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig18.3100.1 vs. uniprot
Match: A0A6H5JVL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL5_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 2.860e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   49 GFGVGCNPPNNGDHAEYLTPFFRSVGGDVTLDRGRHT 159
            G   G    N+G+ A+YL+PF RSVGGD+T+DR RHT
Sbjct:  103 GLATGSVSSNHGEAADYLSPFTRSVGGDLTMDRHRHT 139
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BLAST of mRNA_P-fluviatile_contig18.3100.1 vs. uniprot
Match: A0A6H5K871_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K871_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 4.520e-5
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 RKDSGTTSRAEHNARNGFGVGCNPPNNGDHAEYLTPFFRSVGGDVTLDRGRHT 159
            R+  G   R +H  R   G G    NNG+ AEYL+PF  ++GGDVTL   RHT
Sbjct:   54 REFQGMDGRVKHITRKDPGTGRYSSNNGEPAEYLSPFTSAIGGDVTLLDARHT 106
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig18.3100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVL5_9PHAE2.860e-556.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K871_9PHAE4.520e-547.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig18contigP-fluviatile_contig18:57265..58146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size161
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.0328772-CDS-P-fluviatile_contig18:57266..573431622815746.0328772-CDS-P-fluviatile_contig18:57266..57343Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 57267..57343 -
1693563173.944864-CDS-P-fluviatile_contig18:57266..573431693563173.944864-CDS-P-fluviatile_contig18:57266..57343Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 57267..57343 -
1622815746.0462227-CDS-P-fluviatile_contig18:58064..581461622815746.0462227-CDS-P-fluviatile_contig18:58064..58146Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 58065..58146 -
1693563173.953627-CDS-P-fluviatile_contig18:58064..581461693563173.953627-CDS-P-fluviatile_contig18:58064..58146Porterinema fluviatile SAG_2381CDSP-fluviatile_contig18 58065..58146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig18.3100.1prot_P-fluviatile_contig18.3100.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig18 57267..58146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig18.3100.1

>prot_P-fluviatile_contig18.3100.1 ID=prot_P-fluviatile_contig18.3100.1|Name=mRNA_P-fluviatile_contig18.3100.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=53bp
RKDSGTTSRAEHNARNGFGVGCNPPNNGDHAEYLTPFFRSVGGDVTLDRG
RHT
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mRNA from alignment at P-fluviatile_contig18:57265..58146-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig18.3100.1 ID=mRNA_P-fluviatile_contig18.3100.1|Name=mRNA_P-fluviatile_contig18.3100.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=882bp|location=Sequence derived from alignment at P-fluviatile_contig18:57265..58146- (Porterinema fluviatile SAG_2381)
AGGAAGGACTCTGGGACGACCAGCCGGGCGGAGCACAACGCAAGGAATGG
TTTCGGGGTGGGGTGCAATCCACCTAACAACGGTAAGGGTGCTAATTCAG
GGTCTGTAAAATATTCCAAGCAAGATGGGCGTAGCTACCCTGTCGAGCAT
GCGATTCTGGGGCGAGAAAAATCACCTTGTACGGGTTCCGGAGGAACGGA
CGGACCTGACCGTTCGGGCAGTAGTGTAGCGAGGACTAGTACCCCAAGCA
AATCTATTGGTCTGTGCAAGCGTCACGTGCAGAACCTCGCTAAGAGGAGA
TTGGCTGTTTATGCAACCCTCCGAGTGTGGCAGGGGAAGTGGGCGTTCCC
CCTTCGTATGATCAAGCGAAGCGCGATGTTACCTCAAATAGTGGTGGGGC
CCGGGGTGATGTCAAACCATCGGGGAGTGTACGGAATTTACGACAGAGTA
GTCCGAGATACAAGGCAAACTCCCCGCCTAACGCTTCCTTTCAGTGTGAC
CCTCTGCCGGAAGACGAAGCGTTGTGGGAAAATGGTGCCAATGGGGAGAG
TAAAGAAGAGGGGTATTTTCTGATTGAAGAAAAATCCGAGGAAGAGGAGG
GGGCAAATATTGATGCATCCAACTTTGGCTTTTCTTCTGCCAGTCCTGCT
TTGAGAGCACAAGTTCCACAGGATAGTGGTATTTTTGGTGAAGTCGGCGG
TGAAACGATGGACAGAATCCATGTTCTAAATGATAACACTGAAAATCCAC
CCGGGTCGGGTACCTGTCCGGTGCTTCCTCCGCCTGTGCTAAATTTGGTG
AAGGTGATCACGCGGAGTACCTGACGCCCTTCTTTAGGTCTGTGGGTGGC
GACGTTACTCTGGATCGAGGACGACACACCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig18:57265..58146-

>mRNA_P-fluviatile_contig18.3100.1 ID=mRNA_P-fluviatile_contig18.3100.1|Name=mRNA_P-fluviatile_contig18.3100.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=318bp|location=Sequence derived from alignment at P-fluviatile_contig18:57265..58146- (Porterinema fluviatile SAG_2381)
AGGAAGGACTCTGGGACGACCAGCCGGGCGGAGCACAACGCAAGGAATGG
TTTCGGGGTGGGGTGCAATCCACCTAACAACGAGGAAGGACTCTGGGACG
ACCAGCCGGGCGGAGCACAACGCAAGGAATGGTTTCGGGGTGGGGTGCAA
TCCACCTAACAACGGTGATCACGCGGAGTACCTGACGCCCTTCTTTAGGT
CTGTGGGTGGCGACGTTACTCTGGATCGAGGACGACACACCGTGATCACG
CGGAGTACCTGACGCCCTTCTTTAGGTCTGTGGGTGGCGACGTTACTCTG
GATCGAGGACGACACACC
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