mRNA_P-fluviatile_contig17.2960.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig17.2960.1 vs. uniprot
Match: D8LQR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR7_ECTSI) HSP 1 Score: 219 bits (557), Expect = 5.840e-55 Identity = 161/379 (42.48%), Postives = 197/379 (51.98%), Query Frame = 1
Query: 2413 VDLQEMLPGSSRLSAGR--------GGXXXXXXXXXEKESWRSFRVGADEDGVIRHYVNPMNLKRIISPVRWMREPPSGCRGGCSRQYFHFRQPSHCLSALTISCVDLRQQXXXXXXXXXXVTAKQKGFS-------EERIEFLAEKALGGSAGRSRRRGGADASSAAGTEDLTSWGATDYDGEDLEMASRRLLDALWMSAKRGSDTLQISVADGRSLLMGILTGIAPPPPPEYDPVTGRVVADS---KWFPGPLVDLGIPLPA-----------------------ALAALRAASPAGN----YGSSSTFQEKPLRPVLVGASGPFARAAREAGRGRXXXXXXXXSVSGARRREVAALQRAMELALGIASEKGTDPRR 3414
V + + GS R GR GG ++ S V ++ D + HYVNPMNL+R +P + P G GG + H H L L LR+ T + KG ++R+EFLA+KAL S G RG D +G E+L D+DG++L+MA RRLLDALWMSAKRGSDTLQ+SV DGR+LL G+L G+APPPP E DP TG+ + P PLVDLGIPLP ALAAL AA AG +GS+ +K +RP+LVGASGPFARAAREAGRG S S ARRRE AALQRAMELA+G+ SEK RR
Sbjct: 430 VGARAGVVGSGRFRLGRVGRGSGMTGGRAGGRDWSGKELSRNDSTVSSEGDEM--HYVNPMNLRRRSAPH--INSHPKGGSGGGGSRSVHPEHRGHGLPNLLRKFTFLRRSWRGGKQQRQGTTERGKGGLNNGTMNYDQRMEFLADKALRTSVGG---RGSGDGV-VSGLEELGLGATADFDGDELDMACRRLLDALWMSAKRGSDTLQLSVVDGRALLSGLLMGLAPPPPLEIDPATGKAQEKEXXEELSPSPLVDLGIPLPRGVSTDFSYAVRLGVYARISNLPQALAALTAARAAGTAAKQFGSTPGLHQKAMRPILVGASGPFARAAREAGRGGSSREGSTRSSSSARRREKAALQRAMELAMGVESEKEVKARR 800
BLAST of mRNA_P-fluviatile_contig17.2960.1 vs. uniprot
Match: A0A6H5KPM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM5_9PHAE) HSP 1 Score: 218 bits (554), Expect = 4.480e-54 Identity = 153/319 (47.96%), Postives = 181/319 (56.74%), Query Frame = 1
Query: 2539 DGVIRHYVNPMNLKRIISPVRWMREPPSGCRGGCSRQYFHFRQPSHCLSALTISCVDLRQQXXXXXXXXXXVTAKQKG-----FSEERIEFLAEKALGGSAGRSRRRGGADASSAAGTEDLTSWGATDYDGEDLEMASRRLLDALWMSAKRGSDTLQISVADGRSLLMGILTGIAPPPPPEYDPVTGRVVADSKWF---PGPLVDLGIPLPAALAALRAASPAGN----YGSSSTFQEKPLRPVLVGASGPFARAAREAGRGRXXXXXXXXSVSGARRREVAALQRAMELALGIASEKGTDPRR-----TGGGARSASK 3444
+G HYVNPMNL+R +P + P G GG S H H L L LR+ T + KG +R+ LA+KAL S G +G D +G E+L D DG++L+MA RRLLDALWMSAKRGSDT Q+SV DGR+LL G+L G+APPPP E +P TG+ P PLVDLGIPLP ALAAL AA AG +GS+ +K +RPVLVGASGPFARAAREAGRG S S RRRE AALQRAMELA+G+ SEK RR T GGA +A K
Sbjct: 563 EGDEMHYVNPMNLQRRSAPHINLY-PKGGSSGGGSGSA-HSEHRGHGLPKLLRKFTFLRRSWRGGKQQGQGTTERSKGGLNNGAMNQRMGSLADKALRTSVGG---KGSGDGG-ISGPEELGLGATADLDGKELDMACRRLLDALWMSAKRGSDTFQLSVVDGRALLSGLLVGLAPPPPFEINPATGKAXXXXXXXXXXPSPLVDLGIPLPRALAALTAARAAGTAAKQFGSTPGLHQKAMRPVLVGASGPFARAAREAGRGGSSWEGSTRSSSSVRRRETAALQRAMELAMGVESEKEVKARRMRERATEGGATTAMK 875 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.2960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig17.2960.1 >prot_P-fluviatile_contig17.2960.1 ID=prot_P-fluviatile_contig17.2960.1|Name=mRNA_P-fluviatile_contig17.2960.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1242bp MLPGSHSAALQISREGFKLSPSSSAAAAAAATAAAAPSSANKLEANVVKTback to top mRNA from alignment at P-fluviatile_contig17:773241..788877- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig17.2960.1 ID=mRNA_P-fluviatile_contig17.2960.1|Name=mRNA_P-fluviatile_contig17.2960.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=15637bp|location=Sequence derived from alignment at P-fluviatile_contig17:773241..788877- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig17:773241..788877- >mRNA_P-fluviatile_contig17.2960.1 ID=mRNA_P-fluviatile_contig17.2960.1|Name=mRNA_P-fluviatile_contig17.2960.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=7452bp|location=Sequence derived from alignment at P-fluviatile_contig17:773241..788877- (Porterinema fluviatile SAG_2381)back to top |