mRNA_P-fluviatile_contig1.212.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.212.1
Unique NamemRNA_P-fluviatile_contig1.212.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.212.1 vs. uniprot
Match: D7G071_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G071_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 4.890e-87
Identity = 149/211 (70.62%), Postives = 171/211 (81.04%), Query Frame = 1 
Query:   22 RAIAGGAVAVLTVLLRHHQ-GQAFFVGRAAAGSLVYRAPATAVATSAVSAQRRSRRP----ARLTATMTPPEKTEVVSVLNDDGSRKTGEQIREEYFMAALTGQERGLPAGSYLNDTVEAGPGVPEVTIVWQPYEDQVLAPAGSSLLRSAISCGAMTIDNTFCLTGQCEACMAEIDGEVVLSCMVPVPSDGRSDVEALVCNSDAAWEDMMV 639
            RA+A  AVA   V L H Q GQAFFVG  A    + R    +   +A S  ++ RR     ARLTATM P E+T+ V+VLNDDG+RK+GEQIREE+FMAA+TGQERGLP GSYLNDTVEAGPGV +V++VWQPYED+VLAPAGSSLL+SA  CGAM IDNTFCLTGQCEACMAE+DGEVVLSCMVPVP+DGR+DVEALVCNSDAAW+DMMV
Sbjct:    5 RAVAASAVAAFGVFLSHQQRGQAFFVGTPAVD--LRRTAVYSRGLAAGSISKKGRRAGVVRARLTATMAP-EQTDTVNVLNDDGTRKSGEQIREEFFMAAMTGQERGLPPGSYLNDTVEAGPGVEQVSVVWQPYEDKVLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 212
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BLAST of mRNA_P-fluviatile_contig1.212.1 vs. uniprot
Match: A0A388KU81_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KU81_CHABU)

HSP 1 Score: 80.5 bits (197), Expect = 3.870e-15
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  433 GSSLLRSAISCGAMTIDNTFCLTGQCEACMAEID-GEVVLSCMVPVPSDGRSDVEALVCNSDAAWEDMMV 639
            GS++L++A+  GA+TIDN FCLTGQC+ C  E++ GE++ SCM  +PS G+S +  LV +SD AWE M V
Sbjct:    4 GSNILKAAVEAGALTIDNRFCLTGQCDVCCVEMEHGEIIRSCMHAIPS-GKSSITVLVVDSDEAWEAMSV 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G071_ECTSI4.890e-8770.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A388KU81_CHABU3.870e-1552.86Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2694519..2699385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.8
Seed ortholog evalue5.3e-73
Seed eggNOG ortholog2880.D7G071
EggNOG OGs2F1MW@1,2T2MF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionBeta-grasp domain
Ec32 orthologEc-05_004050.1
Exons5
Model size1704
Cds size633
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.3053184-UTR-P-fluviatile_contig1:2694518..26955801622815305.3053184-UTR-P-fluviatile_contig1:2694518..2695580Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2694519..2695580 -
1693561457.9651694-UTR-P-fluviatile_contig1:2694518..26955801693561457.9651694-UTR-P-fluviatile_contig1:2694518..2695580Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2694519..2695580 -
1622815305.3721747-UTR-P-fluviatile_contig1:2699376..26993851622815305.3721747-UTR-P-fluviatile_contig1:2699376..2699385Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2699377..2699385 -
1693561458.549615-UTR-P-fluviatile_contig1:2699376..26993851693561458.549615-UTR-P-fluviatile_contig1:2699376..2699385Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 2699377..2699385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.3208382-CDS-P-fluviatile_contig1:2695580..26956411622815305.3208382-CDS-P-fluviatile_contig1:2695580..2695641Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2695581..2695641 -
1693561458.5003097-CDS-P-fluviatile_contig1:2695580..26956411693561458.5003097-CDS-P-fluviatile_contig1:2695580..2695641Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2695581..2695641 -
1622815305.3321834-CDS-P-fluviatile_contig1:2696642..26968061622815305.3321834-CDS-P-fluviatile_contig1:2696642..2696806Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2696643..2696806 -
1693561458.5136096-CDS-P-fluviatile_contig1:2696642..26968061693561458.5136096-CDS-P-fluviatile_contig1:2696642..2696806Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2696643..2696806 -
1622815305.3423736-CDS-P-fluviatile_contig1:2697191..26973201622815305.3423736-CDS-P-fluviatile_contig1:2697191..2697320Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2697192..2697320 -
1693561458.5235546-CDS-P-fluviatile_contig1:2697191..26973201693561458.5235546-CDS-P-fluviatile_contig1:2697191..2697320Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2697192..2697320 -
1622815305.3518527-CDS-P-fluviatile_contig1:2698331..26984251622815305.3518527-CDS-P-fluviatile_contig1:2698331..2698425Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2698332..2698425 -
1693561458.5323842-CDS-P-fluviatile_contig1:2698331..26984251693561458.5323842-CDS-P-fluviatile_contig1:2698331..2698425Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2698332..2698425 -
1622815305.3610482-CDS-P-fluviatile_contig1:2699191..26993761622815305.3610482-CDS-P-fluviatile_contig1:2699191..2699376Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2699192..2699376 -
1693561458.5410626-CDS-P-fluviatile_contig1:2699191..26993761693561458.5410626-CDS-P-fluviatile_contig1:2699191..2699376Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2699192..2699376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.212.1prot_P-fluviatile_contig1.212.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2695581..2699376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.212.1

>prot_P-fluviatile_contig1.212.1 ID=prot_P-fluviatile_contig1.212.1|Name=mRNA_P-fluviatile_contig1.212.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=211bp
MGPGRAIAGGAVAVLTVLLRHHQGQAFFVGRAAAGSLVYRAPATAVATSA
VSAQRRSRRPARLTATMTPPEKTEVVSVLNDDGSRKTGEQIREEYFMAAL
TGQERGLPAGSYLNDTVEAGPGVPEVTIVWQPYEDQVLAPAGSSLLRSAI
SCGAMTIDNTFCLTGQCEACMAEIDGEVVLSCMVPVPSDGRSDVEALVCN
SDAAWEDMMV*
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mRNA from alignment at P-fluviatile_contig1:2694519..2699385-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.212.1 ID=mRNA_P-fluviatile_contig1.212.1|Name=mRNA_P-fluviatile_contig1.212.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4867bp|location=Sequence derived from alignment at P-fluviatile_contig1:2694519..2699385- (Porterinema fluviatile SAG_2381)
AAAAAACAAATGGGTCCCGGTAGAGCAATTGCCGGGGGCGCCGTGGCGGT
TTTAACCGTCCTCCTGCGCCACCACCAAGGCCAGGCATTCTTCGTCGGGA
GGGCGGCCGCGGGGTCGCTGGTTTACCGAGCTCCGGCAACGGCGGTGGCA
ACTTCAGCCGTATCCGCGCAAAGGCGATCGCGGCGACCAGCAAGGTCGGT
GTGTTCATATTCAGCCGCGGCGTTTAGCGGGGGGCTCTTTAGCCGGCCGA
GTGGTACAGTGCGGGTGAAATCAATTGGCGTGACAGTTCTCTTTTACAGA
GGCTCTGTTTATTTCCCACTTCTGGATAGTGCGGGTGCTCGCTACAGTGC
GGGCGAAAAATCGCTCTTGTGGAATGGATTTCGGCGGTGTGAGGTCGTTT
GAAGCCCCTCCCCGGCGCGCGTGCTTTTCCTGGACGCGATACGATTGATC
ATTTGTCGAGGACTCAGCGGTGCCCTTCGATGATGGATAAATGTGGTGAT
GCGCGCTTCACAAGCGGCGGGGATGAACGCGTGTTAGCAAAGCAAATACG
AAGGCCTTGCTCACAAACAAGCCTACCTTACGAGGGAAGAAAGCACACCA
CGCGATAAAGTTTTGGGTTCTTCATTTTTTTCGCCGGATATGTCTACGTG
TGGGAGGTATGATCCCTTTCTTAGCCCTGTCACTTTATCCTGAAGGATTT
TTTTTTCGGAGCTCATTTGGACGCTTGGAAACGGGGCACCGGGTGTGCTT
TCGTGCGTGGAATTGTACTTTCTCGTGTGGGTTTGTTATTTTGCATCGTT
TACGGCAACGCCCGACGCCGTTGTTTAATTGTCGTGCTTTACGGACTCCC
CTCGTCGTCCAGAGCTGTGTCTTGCTGCTGTCTGTGTAGCTCCTAACAGA
AGTGTGCCTTATGTTTGCTGCCACCCTCCCCCCTCGTCCACTTGATGCTG
GCGCAACCAGGTTGACCGCCACAATGACTCCACCTGAGAAGACGGAGGTC
GTTAGCGTCCTCAACGACGACGGCAGCAGAAAAACTGGGGAGCAGATCCG
AGAGGTGATTACCACACAGCAGCAGCACTATTATAATGGCGTTGTCGTCG
TGGACAGCTCGATCAGCATCTCGTGTTCATCTCCTCGGTTCGTGGGTATT
TCTGTCCCGATGCACGAGTGACAACAACTTGAGACTAATCTTTTTCTTGG
GTGGGGGGAGGGCGGGGGGCTGACGCTTTTAGCTATTTGCGCGCAATCGA
GCAGAGGAGAACCTAACAAGGGGGGCCAGAAAAATCGAATCCGTCTGGAC
AAGCATTGCCTCTCCCGTTTCCACCGGTGCGTACCCACGCCCATCGTCGT
GGTTTCCCTCCCGAAGCAATTGTTTAGTTGGCCGCCGTTCGCCGAGCGGA
TTGGAGGACTACCGAACTCCCCCCCCCCTTGCACCACGGGCGGCCCGCAC
CACGTGGCCAGGGGCCAAGAAGCGAAGGGCGCCGCGTAAAGGCGGGCCTT
GGGTGGGTTTACCCATCGATCCACAGGAGAGTGACAGGCCCAGCTTTCCG
AGCCACCCGAGTTGGGAATAGAGGAACAGGAAACTCTTGCGGGGGTCGTC
ATCGCCTAGAGTACGAGATGTACCGGCGGAGATGGGAACGGCAGACGTGA
AATGGGCGCATCAGAAATGAAGCCGACTTCACTGACAGGGCAGGGAAGCG
ATATGGAATGCTGCCACAAGCAAGCAAGATCGTACTTGAGTTATCTTGCC
AAAATGAAGGGAACAAAAACAAGAGAGCCTCTTCCTCACAATCAACCAAC
CAACCAACTCACCAACCGATGAAAAAAATAAACACACCAAATAACGGCAC
AAGCAAGCTACCTTGTGCTTGATTTAACGCTGTTGCCCCTGCCGTCAAGT
CGGAAGTCGGCCTCGTCCTGTGTCCTTTGGCGGTTCGGAGTACACGGCAC
CCGTGGTAGCAATTGACCGTGCCATTACTTCTCTGTGCGCGTGCGCGTGC
TTGCGCGTACGCGTGACTAACGCGTGGCTCTCTCTTTCTCTCCCTCCTCC
GTCCCTTTTTGGCAGGAGTATTTCATGGCGGCGTTGACGGGCCAGGAGCG
GGGGCTGCCGGCGGGTTCTTACCTGAACGACACCGTCGAGGCGGGGCCCG
GCGTACCGGAAGTGACAATTGTGTGGCAGCCTTACGAAGACCAGGTGCGA
TTCAGCAGGTCAACCCCTCCCCCCTCCGGTTAACGGGTCGCGTCGGTGTG
GCTTCGAAAGGAGATCGCTTGATTTGGTTGCTGTAGGCAGAGAGAGAGAT
TGTGTGTATCTTTTCACAGCATGTGAGTGTGAGGGTGGTGCAGGTCGTAT
TTCGCTCCTGCAGCAACGCGGAGAAGTCAGGGAAGCCTTAGGGGGTTTTC
GTTGATTTTGATCCGTTCCGCGGGGTCGATAACAAGTCAGCAGGTACTCA
CTTCCTGACATCGTCGATAAATCGCTTCAATTTCTGGCGTCGCGCGCCCA
CACACACCGTTGCTTTTCTGTAATTGTCATTGTTTTGGGGGGGGGTTGGG
GGGGTTGTTTTCATTCCCTCGGGCAACAGGTGCTTGCTCCGGCAGGGTCC
AGCTTGCTCCGAAGCGCGATCAGCTGCGGCGCCATGACGATCGATAACAC
CTTCTGCTTGACGGGCCAGTGCGAGGCGTGCATGGCGGAGATCGACGGAG
AGGTCGTGCTGTCCTGCATGGTGCCGGTGCCATCCGATGGGAGGTGAGTG
AGGATGTGCAGGAAGGCTTTTTGTCGGTCCTGAGGAGGTCCCGTCATTGT
TTTTGCGTGCGCTTGTTATCGCCGAGGCAGTAACGCTTGCTTGAAACCCG
GGACCCGGCGACGGATCTCGGGCACTTGACTAACCGGATTTGATTCGGCA
CAAATCAGCACCCGTGGTTTCTTGAACCCCGTGACCATGCCAGTACCCGT
TACGGGACAGCCCAAATTTCCCCACAATCTCGTCGGGTGCCCTGGACGGC
ATACTGGAGCCAGGATGCAACGCTCCATCGCCGAGGCAGGCAGGCTTCAT
CGCACCATCTCCACAAACGATCTTGAGTAGAAAGCCCTTTCTTGCAGGGG
GTGTGATGGGACGGAAAAGTACATCGAAACGTGGATCAGGTGGGTGGGAG
GGGGCCATGAGGAAGGATGGGCACCGGGACAATGCGCAAGGGACTGCGGA
CAGGAAAAGAGCTAGGTGGCAGGTCGATCGCGCGAAGCGTTTGGGCTGGG
AAAATGCCAGGAGTCGGCCGTCGGACGGGAGACTTCAACTCGCAGCAAGA
GGAAGGAAAGCAGCAGGTCGAACGTGCACAAGATGAAGGGAGGAGGAGGA
CGAAGAGGGGCAGGGGCGTCCACGTTGCGAATCAGAGGGAAACGAGGCCC
GACAGAAGCTGATCAAGTCTATGAGTGATTGTGACATATCTTGATGGTTT
GGTGGGTTGATTTTAGGCAGAAGCGGTGTTCTGTCTTGAAAAGGGGTAGA
TGCATGGTCAACAGCAAAATGGCTGCGTTTCAATAGATTGTGCAAATGTA
CAGAACAATCGTTGCCTCAAGAGCCGTGGGTCACTCGGGCTCGCCCTCAC
AAGAAGTCGCCGACCGGGGCAAGGAAATGGCTTCGGGCACCCGGTCGATG
GCCCTGCTGACGCGTTAACCCTCGGGCTTCGCCTGCCCATGCCTGCGCCC
CTTCCTGCTTACAATGGCGTGTCGTGTATCATGCTTGTACTCAGGAGCGA
TGTGGAGGCTTTGGTGTGCAACTCCGACGCCGCGTGGGAGGATATGATGG
TCTAGGCGGCGGCCTTTGCTATTGGCAGGCCTCCTCGTGGTTTCACCTGA
GATGCTGCAGGCGTGCGCCATAGAAGAGGGGGGACGGATGAGCGAAGCGA
ACGGGTGATACCCTGGGCGGTTCTGACATCTTGGTGAAAAACTCGGCGGC
TTTGTTCGCAGATGGTATGTGGAGTTACTCCGGTGCAGACCAGCCGATCC
GGTTTCGGGCGTGGGCGCGTCGGAGGGGGCGGGCACGGGGTTCCCACCGC
TTGCAGGGGACTTCGATGCCGAGTCAGAGGAGATGCACTGTCGCAGGAGG
AGGGGAGATGTGAAGGCAGAGGTGGGGACGGCGGGGGCGAGACTGAAAGT
ATCAAGACCGAGTGTCGAGGTTACTGCTGCTTGGACGACCCCTCACTTAG
GAAACTGCTTACTTGTCGGTAATCTTATCATCTTGACGATCGCCCAGTGC
ACAGTCGAACATGTTAATATGCAGCTTTTGGAGCTTTAAAAGCACACGGC
TTTGAGCTGCAACACATTCAACACCCGTGGAACGTTTACTCAAGTATATC
AATGTTTTATGGGTAGCCGCCTCGCACGCCGTCTAGACGACCGCCTACAG
TACTCCCGATGCATGCCGGACTGCCCACACGTACGCACTTTCTGGCAGCA
GTTTTGTGTTTGCCTCCGATCGAAGTGTTTTGTAGGCATAGGCGAGAGAT
AGATAGAGGCCAGAGCGCGCTCTATGAAGCGCCTCTCGTCTCAGGAGATG
GCACGCCCCGGTTGAGATTGACTGTTGGCGAAAGATTGTGAGCCTGTCCT
TTGGAGCGAGGCTGCGCTTGTCGTTCCCTGGTTCCGGGTTTCTGTTGATG
TCCGTGGTGCGCCTTTTCTTGTGGGTGAGGTGTGAGCTTTGAAGCTGCGT
GTGTTGCGGGTGTAAGAGTGAGCTCTGCCGGAAGGTCACTTTGAGCATGT
TCCGCGACCATCAGGGTCTGCTCCTACTGCTTTCGTCATTCGCAACGGGT
TGGTGCCGTCCTTACTTCGAACACTAAGCTAATCGTGTGTTTTTTCCTTT
TTTCGGCTGTGCCGCAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:2694519..2699385-

>mRNA_P-fluviatile_contig1.212.1 ID=mRNA_P-fluviatile_contig1.212.1|Name=mRNA_P-fluviatile_contig1.212.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1266bp|location=Sequence derived from alignment at P-fluviatile_contig1:2694519..2699385- (Porterinema fluviatile SAG_2381)
ATGGGTCCCGGTAGAGCAATTGCCGGGGGCGCCGTGGCGGTTTTAACCGT
CCTCCTGCGCCACCACCAAGGCCAGGCATTCTTCGTCGGGAGGGCGGCCG
CGGGGTCGCTGGTTTACCGAGCTCCGGCAACGGCGGTGGCAACTTCAGCC
GTATCCGCGCAAAGGCGATCGCGGCGACCAGCAAGATGGGTCCCGGTAGA
GCAATTGCCGGGGGCGCCGTGGCGGTTTTAACCGTCCTCCTGCGCCACCA
CCAAGGCCAGGCATTCTTCGTCGGGAGGGCGGCCGCGGGGTCGCTGGTTT
ACCGAGCTCCGGCAACGGCGGTGGCAACTTCAGCCGTATCCGCGCAAAGG
CGATCGCGGCGACCAGCAAGGTTGACCGCCACAATGACTCCACCTGAGAA
GACGGAGGTCGTTAGCGTCCTCAACGACGACGGCAGCAGAAAAACTGGGG
AGCAGATCCGAGAGGTTGACCGCCACAATGACTCCACCTGAGAAGACGGA
GGTCGTTAGCGTCCTCAACGACGACGGCAGCAGAAAAACTGGGGAGCAGA
TCCGAGAGGAGTATTTCATGGCGGCGTTGACGGGCCAGGAGCGGGGGCTG
CCGGCGGGTTCTTACCTGAACGACACCGTCGAGGCGGGGCCCGGCGTACC
GGAAGTGACAATTGTGTGGCAGCCTTACGAAGACCAGGAGTATTTCATGG
CGGCGTTGACGGGCCAGGAGCGGGGGCTGCCGGCGGGTTCTTACCTGAAC
GACACCGTCGAGGCGGGGCCCGGCGTACCGGAAGTGACAATTGTGTGGCA
GCCTTACGAAGACCAGGTGCTTGCTCCGGCAGGGTCCAGCTTGCTCCGAA
GCGCGATCAGCTGCGGCGCCATGACGATCGATAACACCTTCTGCTTGACG
GGCCAGTGCGAGGCGTGCATGGCGGAGATCGACGGAGAGGTCGTGCTGTC
CTGCATGGTGCCGGTGCCATCCGATGGGAGGTGCTTGCTCCGGCAGGGTC
CAGCTTGCTCCGAAGCGCGATCAGCTGCGGCGCCATGACGATCGATAACA
CCTTCTGCTTGACGGGCCAGTGCGAGGCGTGCATGGCGGAGATCGACGGA
GAGGTCGTGCTGTCCTGCATGGTGCCGGTGCCATCCGATGGGAGGAGCGA
TGTGGAGGCTTTGGTGTGCAACTCCGACGCCGCGTGGGAGGATATGATGG
TCTAGGAGCGATGTGGAGGCTTTGGTGTGCAACTCCGACGCCGCGTGGGA
GGATATGATGGTCTAG
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