mRNA_P-fluviatile_contig16.2763.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2763.1
Unique NamemRNA_P-fluviatile_contig16.2763.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2763.1 vs. uniprot
Match: A0A6H5L0N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N3_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 8.070e-54
Identity = 98/160 (61.25%), Postives = 113/160 (70.62%), Query Frame = 3 
Query:   33 MKPSCVLAVGACGLIAAQAFVFSPAVPSASYRPAPRRQEQARMVARAAEAAATAGAGAVDTDGPSEEKKERVWDMTSWPARSEEYNKMPSDARNWEVQNERLEVWEDAPNPVEELTGRDWYEQFAPSDVEIEAAEMGFDWTDQWFEDNGITRTDL--PEE 506
            M+ SCVLA G CG+ A +AFVF+PA  S   RPA RRQ+         E AA A  G  +TDG     K+R WDM  WP RS+E+  MPSDARNWEV+ ERL+VW+D PNPVEELTG +WY  FAPSDVEIEAAEMGFDWTD+WFE NG+ R DL  PEE
Sbjct:    1 MRASCVLAAGLCGIAATEAFVFNPAAASVGCRPASRRQQMQ-------EVAAAADVGGGETDG-----KQRTWDMHRWPDRSKEFKAMPSDARNWEVEGERLQVWDDEPNPVEELTGNEWYHTFAPSDVEIEAAEMGFDWTDEWFEVNGMARKDLMTPEE 148
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BLAST of mRNA_P-fluviatile_contig16.2763.1 vs. uniprot
Match: D7FTT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTT3_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 8.240e-34
Identity = 62/86 (72.09%), Postives = 70/86 (81.40%), Query Frame = 3 
Query:  255 MTSWPARSEEYNKMPSDARNWEVQNERLEVWEDAPNPVEELTGRDWYEQFAPSDVEIEAAEMGFDWTDQWFEDNGITRTDL--PEE 506
            M  WP RS+E+  MPSDARNWEV+ ERL+VW+D PNPVEELTG +WY  FAPSDVEIEAAEMGFDWTD+WFE N + R DL  PEE
Sbjct:    1 MHRWPDRSKEFKAMPSDARNWEVEGERLQVWDDEPNPVEELTGNEWYHTFAPSDVEIEAAEMGFDWTDEWFEVNEMARKDLMTPEE 86
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BLAST of mRNA_P-fluviatile_contig16.2763.1 vs. uniprot
Match: A0A835ZEX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.220e-5
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 3 
Query:  249 WDMTSWPARSEEYNKMPSDARNWEVQNERLEVWEDAPNPVEELTGRDWYEQFAPSDVEIEAAEMGFDWT--DQWFE 470
            WD  S P ++    ++ +DA +W+ QN+R+EVWED PNP       DW   + P+D E EAA  G+D+   + W E
Sbjct:   45 WDGKSEPKKNPLLEQLAADA-SWDRQNDRVEVWEDKPNPT-----FDWISAYLPTDEEREAAAAGYDFANPEAWLE 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0N3_9PHAE8.070e-5461.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTT3_ECTSI8.240e-3472.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZEX8_9STRA1.220e-539.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:1647401..1652427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001450.1
Exons5
Model size1615
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.3796318-UTR-P-fluviatile_contig16:1647400..16484941622815700.3796318-UTR-P-fluviatile_contig16:1647400..1648494Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1647401..1648494 -
1693562991.8896258-UTR-P-fluviatile_contig16:1647400..16484941693562991.8896258-UTR-P-fluviatile_contig16:1647400..1648494Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1647401..1648494 -
1622815700.4521425-UTR-P-fluviatile_contig16:1652395..16524271622815700.4521425-UTR-P-fluviatile_contig16:1652395..1652427Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1652396..1652427 -
1693562991.9531653-UTR-P-fluviatile_contig16:1652395..16524271693562991.9531653-UTR-P-fluviatile_contig16:1652395..1652427Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1652396..1652427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815700.3920052-CDS-P-fluviatile_contig16:1648494..16485931622815700.3920052-CDS-P-fluviatile_contig16:1648494..1648593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1648495..1648593 -
1693562991.8990295-CDS-P-fluviatile_contig16:1648494..16485931693562991.8990295-CDS-P-fluviatile_contig16:1648494..1648593Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1648495..1648593 -
1622815700.4027805-CDS-P-fluviatile_contig16:1649673..16497541622815700.4027805-CDS-P-fluviatile_contig16:1649673..1649754Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1649674..1649754 -
1693562991.9087572-CDS-P-fluviatile_contig16:1649673..16497541693562991.9087572-CDS-P-fluviatile_contig16:1649673..1649754Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1649674..1649754 -
1622815700.415713-CDS-P-fluviatile_contig16:1650246..16503061622815700.415713-CDS-P-fluviatile_contig16:1650246..1650306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1650247..1650306 -
1693562991.9195194-CDS-P-fluviatile_contig16:1650246..16503061693562991.9195194-CDS-P-fluviatile_contig16:1650246..1650306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1650247..1650306 -
1622815700.4268806-CDS-P-fluviatile_contig16:1651294..16514671622815700.4268806-CDS-P-fluviatile_contig16:1651294..1651467Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1651295..1651467 -
1693562991.9315903-CDS-P-fluviatile_contig16:1651294..16514671693562991.9315903-CDS-P-fluviatile_contig16:1651294..1651467Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1651295..1651467 -
1622815700.4394183-CDS-P-fluviatile_contig16:1652319..16523951622815700.4394183-CDS-P-fluviatile_contig16:1652319..1652395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1652320..1652395 -
1693562991.9428856-CDS-P-fluviatile_contig16:1652319..16523951693562991.9428856-CDS-P-fluviatile_contig16:1652319..1652395Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1652320..1652395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2763.1prot_P-fluviatile_contig16.2763.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 1648495..1652395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2763.1

>prot_P-fluviatile_contig16.2763.1 ID=prot_P-fluviatile_contig16.2763.1|Name=mRNA_P-fluviatile_contig16.2763.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=163bp
MKPSCVLAVGACGLIAAQAFVFSPAVPSASYRPAPRRQEQARMVARAAEA
AATAGAGAVDTDGPSEEKKERVWDMTSWPARSEEYNKMPSDARNWEVQNE
RLEVWEDAPNPVEELTGRDWYEQFAPSDVEIEAAEMGFDWTDQWFEDNGI
TRTDLPEEGDKK*
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mRNA from alignment at P-fluviatile_contig16:1647401..1652427-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2763.1 ID=mRNA_P-fluviatile_contig16.2763.1|Name=mRNA_P-fluviatile_contig16.2763.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5027bp|location=Sequence derived from alignment at P-fluviatile_contig16:1647401..1652427- (Porterinema fluviatile SAG_2381)
TTTCAAGACAAGCTTGAACAAGGAGAAGGCAGATGAAGCCCTCTTGCGTT
CTTGCCGTGGGTGCCTGCGGGTTGATCGCCGCGCAGGCGTTCGTGTTTAG
CCCTGCCGGTGAGAGCTAGTCGTCGAGACGAACATAAGCAAGGTCCGCTC
CACGAAAGCGCTGTATTTGGTTTCGCTGTTGGACTCGGGGGTGGGGGGAG
GGGGCGGGGAGGTCCTTCCTGTTGGACGGTCGTGGTGGTCACATCGTTGC
AGTGGTTGTCTCCACCATTTTGTGTCGTCTTGCTCCGGTGATCGCTGTCT
CGATGGCTGCTGGTGATTCCCTGGCCGCCGCTATTGGCATTGTTTGTGCT
TGAGCGGGTGCGTCTGCCGTGATTGTTGCCGCGGTGGCGCCATCTTTGTC
AATCTTCAAATGCTATACAACACGGCCTCGTCGCCGCCGGTACCTCGATG
CGACTTTTTTTTTATGTTCAATGGTTCGGAGGGGGGGCGGGGCGACACCC
TGCTTTTGTCGCCATCCATGCACCCATGCCGTGTAACTGTTTTGACGCCA
CGGACATGGCCACCGTCCGTAGTATGGGTACCGCAATCGCAATCGTTGTT
CGCGGGATCGCGTTCGTCGTTCAGAGAGCGCTTCCCCCCCCCTTTTGTGT
TTTTCAAATTGCCGAGATCCCATCTTGATTTGATTCCCTAATGCACCTCG
GATGCTGCCGCCGGCCTTCAAAGGCCGCACGCTTGCTTGTTCAATTTCAG
ACCACGATGCGTCCACACACTCCCTTCAAGGTGTATCCAGAGTATGTTGA
AGCGCCGCTCACCGTGAACTGCGGTGCACAGAGCACTCCACCAGGGCCAA
TTTCAGAAGCCCGATCTACTCAATCGCAGAGAGGATACCCGCTCCCGCAA
GTGATCAGTTCCCCCTACGCCTGCCTCCGGATTTTGCCGTGCCCCTCTGG
TTTGTCCCAGTCCCTTCGGCCTCCTACCGGCCAGCACCCCGAAGGCAAGA
GCAGGCGCGGATGGTGGCGCGGGCGGCGGAGGCGGCGGCGACCGCTGGGG
CGGGGGCGGTGGACACGGACGGCCCGAGCGAGGAGAAGAAGGAGCGCGTG
TGGGACATGACGAGCTGGCCGGCCAGGAGTGAGGTGTGTGTGATAGTCCC
GTTCGCGACGATTCCTTGTTCTATGGTATGTTCGTGTTTTTCATTTTCTC
CGCTAGCAGCGACCGTGTTCTTCCCGTTTCTTCCTGTTCCGAAGTGTGTG
TTTTGCTGAATGGTTGACCCCGGCCCATTTGTATGGTGCATGTGTCGGGA
GATTTCAGTCCCAGCGGGACAATGAAAGCAAAGGCGTTCAGTATTTGCAA
TCACTATGTTGTTGTCCATTGTTACAAGTAGCATTACTATAAGCCGGAGG
GGGAAGTGAATGGAAAGAGGCGAGGTCGACGGATGAAGCGTCTAACACAT
GGACATGTTCGGGTTCAGTTGCGTTTCGAAAATACGACTGTCAATCGATC
GAATGACTTGTGGGTGACGCAGAGTGCGCCTAGCCGCAACTGAAGGATTT
GCTGCTGTTCCAAAATTCACGAAGACTGTGGCGATGTATATTCGCTAGAC
AAGAAGTCGTGAAACGGGTTTTTCGTTTCGTGTGACATGACTCGTCTCCG
GTCGTCCGACGGACTCCTGTTCATTCGCCAAGGAGTTGACTGACCGCCAT
CTAGCCGACGAGTGAATCGGAGTCCTTCTGACGAATGGGCGAATGAATAC
AAGCCCCGACGGTTAGGAGATGCGCGTTCGACAAATGAAAAGAAGCCCGA
TCGACGAACGAAACAGAGCATGTGCGACGAAAACGAACAGAGGCAAGGCT
GACGAATGGAAAAAGTCAGCTTAAGCCGTGTTGAACCGTGGCAGTCGATC
GGTCGAATGGCTATAGGCTGACGAGTGGTGCGCACCTAGCGGCCACTGAA
GGATGGGCTGCTGTTCCAACCACGATGCGCCCGAATTGTTCTGTTCCTCG
TTCTTTGGCTGCCAGCATTATTAATGCAGAGAGGGAGAGAAAGAGAAGAA
TCCGGTGTCATATTCTCAGTGCGAGTCCGTTTTTTTCGGTCGCTTCCGTT
TTCCGCACCCCGCTCTGGCAGGAGTACAACAAGATGCCGTCGGACGCGCG
CAACTGGGAGGTGCAGAACGAACGCTTGGAGGTGAGGCCCTGTGATTCCG
CTCGCGTTCTCGCGAGCGTGGGTGTCAGTGTGCGAAAGGGTAGAGGCGGT
AGTGCGGGTGTAGTGCCGGTACTTCTTCAGCCGTAGTCGCCGCTGGTTGT
TCGTCGTGTTTGGGGGTTGGGGTCTTTGTTTGTGATGCCGGTGTAGATGT
TCGTTGTCCTGTTGTGGGGTGTCCGCTATGTTCATGCTGGTGATGGTTGA
GATGGTAGCGGCGGCGGTGGCATTGCAGCCCCTGTGAACGTTGTTCCTGA
TGAACGTGCTTTAGTGTTGAATAGCAGCGGCGCCAACATCGGCAAGATTT
GCTATCACGTAGCGTTGTGTTTTGCCTTCCGACACGGGACAATATTGGCC
AAAACCGCAATAGCGGCGACGACAACAGCAGCGGTAGCGGCAGCAGGTAC
CGACCGACTAAATCTAGACATCATTGACGACACCATCGCGCCAAAAGCTT
CAATCCGTCGTGTTTCTGCCTAGGTGTGGGAGGATGCGCCCAATCCCGTC
GAGGAGCTGACCGGAAGGGATTGGTACGAGCAGTTCGCACCCAGCGACGT
CGAGGTGAGTTCGCGGAATGTCACGTGATAGTCCGGTGGCTGTCCTACGA
CGGTAATTTGGCAATCCTGTGATAGTCCTGTGGCAGTCCTGTCACAGCAG
CACAGGTGTTCTCCTAGGGAGAGCCCTGAGATTAGGGGAACCCTCCGCTT
CGAGGGCGCACCTGTGTTCTGTTGGGGCAAGGCGGATGGCGAGGCATCTC
CCCATGAGTGGTCGGGCCGCTTTTCCGCGCTTCATGGTCGCTTAAATTCT
CAAAATACAAGGATAAGGGCCGTTCGAACCAGGACGACTGGACTGTTGTA
GCCCCCGTCGCGGATGTGGGCGTCTATACCTGTCGTGTCGGTATTGTCTT
GTATTGCTTTCGTCGACCTAAAAGGGTTGTCGCAACTGTAATGCCACTGA
TGCTGCCGTTGAGATGAAGTTGGCTGCTTTCACTTGCGCCACTGTCGAGG
TCGACATTCTGGCCTGTTTCTGTTTGGTTTCGAGCTGATGTGGTTCTTGC
CGTTATCAAGTGGTTTCCCGCAGACTGTCGTGCCAGCATGGAACGTTCCC
AGCGATGGAGTGGAAATGATGTCCTGAACTGTGGTGGAAACCCCGGCAAA
CGAAACGGTGCTCAACTTGAATAGGGTCAGGGCAGGTGATACGACCGACT
CGATCCCTGTCGTAGGGCTGATCAATCTGTTGCGAGGTAGAGTGCTCAAC
TGTCGAACATGGGTTCGAAGTTCGAAGGTTGATATCCTCAAATGCGATGT
CGCGTACCCCGCGAGCTGCAAGTCGGGAGAACACGAATGTTTCCCCTGAA
GCCCGATCAGCCCTGAGTTGGTCATCCCATGATGTCGCGATTTCGTTTTT
TATGTGGGAAGAAGGTCGGTTCTTGTGTTTTCATTTGGCATACAAGCGAG
TTTGCGGAATGAATCATCCGATCTCTCCTGGTTTTGCTGTGCTCGAAACG
CACGAAAACGGTTTTGGGGCGACCGTCTTGGTGCCTCGTCGCTCTCTGAT
GTGCTCTTGATTGGTGTGCGGCTCTGAGCATCCGTGTTCCCTCCCCGCTG
CGATTGTGGCCGCGGGTCTTTCTTCGTCGTGCAGATCGAAGCGGCCGAGA
TGGGGTTCGATTGGACCGACCAGTGGTTCGAGGACAACGGGATCACTCGC
ACAGACCTTCCCGAGGAGGGGGACAAGAAGTGAACATGAACAAAATACGC
CGAAAACACCACGAAGGAGGAGGCGGAAGGAGAAGGAGTTGAGGAGCGAC
GATGAGGCTGCGAGGTGGCGAACGGAAAGTATCACCGTAGTGCATTATTC
ATTACTCGTAGAACAGTCTTTGTTTGAATCTGGCTGTCGAGCACATGCGG
GAAGAGAGCGAGGTTGGCTGTTCCTTAAACGGCACGCGACACGCCTGTTG
TCTCCTGATAATTTGATCAACGCGGAAGAATCGCGCTAAGAACGCGAAGG
CGGGAAGGGGCCTTTTCCTCCAGAGGGGCTCCCGGCGCACACGCTCGCAG
CCGGGGACCGTTTGAGATGCAGGCGCGTCGTCTCTCTGGGTCCTCTTGTT
CCCCCAAGAAGCATTCAGGGAAGGGGAGCGACATGAGAGGAATCTCTTGG
AATTGTGTCAGATGATTTTTGTGGTTTTATGTTTCGCTATCCAGCGCATA
GGAATCTTGGAATGGAGCGCATGCCACGCCTCGGGGAAAGTTGATCCTTC
TTGGCGCCTCAAGGAATATTCACCTGAAGAACTTTTTCCACCGCATCAAA
AACAAGGAAAGACTCGGACTTTCAATCACCACCTTATGTTGTTTGTTTTC
CGTCGGGCCGCGAGGGGGGAGGGGGGAGAGGCTAGCAGTCGTAAATTGAG
CGCCGCCGGGACCTTGTCCTCGTCGTTTTCGTGTCCTCCGGTTGCGTTGT
GAAATCACAGCTTTGATCGTGGCGATTGTCTTCTCTCGTAGAGTGCCACA
CGCCAACTTGTGTGCTTGCCCCCAGGTCCATTTCGTGCGTCTAGCTTTGG
CGTGCTTGGTAGGAGAAGGACTAGGGAATTCGTTCGATGCCTGCAGCTTT
CTCCCAGCCGCGAATCTACGTTCCTGCCCGGTGAATAAAGCGTTTGCGGC
CTTTGGCCATTTGTTTCGTGCTGGAGCCTGTCGCCGCGCAGAGGAACGCA
GACGGGGAGGTGGTGCGGTGTGTTTCTGAGCGGAGCTTGTCTGGGGCTAT
GTCGGGACTGACTCGTCTCGCGACTTGTACGCGCCGTTCCCGTCCGCTCA
AGACCCAAGAACGCCTCGAGTAGGTCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:1647401..1652427-

>mRNA_P-fluviatile_contig16.2763.1 ID=mRNA_P-fluviatile_contig16.2763.1|Name=mRNA_P-fluviatile_contig16.2763.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=978bp|location=Sequence derived from alignment at P-fluviatile_contig16:1647401..1652427- (Porterinema fluviatile SAG_2381)
ATGAAGCCCTCTTGCGTTCTTGCCGTGGGTGCCTGCGGGTTGATCGCCGC
GCAGGCGTTCGTGTTTAGCCCTGCCGATGAAGCCCTCTTGCGTTCTTGCC
GTGGGTGCCTGCGGGTTGATCGCCGCGCAGGCGTTCGTGTTTAGCCCTGC
CGTCCCTTCGGCCTCCTACCGGCCAGCACCCCGAAGGCAAGAGCAGGCGC
GGATGGTGGCGCGGGCGGCGGAGGCGGCGGCGACCGCTGGGGCGGGGGCG
GTGGACACGGACGGCCCGAGCGAGGAGAAGAAGGAGCGCGTGTGGGACAT
GACGAGCTGGCCGGCCAGGAGTGAGTCCCTTCGGCCTCCTACCGGCCAGC
ACCCCGAAGGCAAGAGCAGGCGCGGATGGTGGCGCGGGCGGCGGAGGCGG
CGGCGACCGCTGGGGCGGGGGCGGTGGACACGGACGGCCCGAGCGAGGAG
AAGAAGGAGCGCGTGTGGGACATGACGAGCTGGCCGGCCAGGAGTGAGGA
GTACAACAAGATGCCGTCGGACGCGCGCAACTGGGAGGTGCAGAACGAAC
GCTTGGAGGAGTACAACAAGATGCCGTCGGACGCGCGCAACTGGGAGGTG
CAGAACGAACGCTTGGAGGTGTGGGAGGATGCGCCCAATCCCGTCGAGGA
GCTGACCGGAAGGGATTGGTACGAGCAGTTCGCACCCAGCGACGTCGAGG
TGTGGGAGGATGCGCCCAATCCCGTCGAGGAGCTGACCGGAAGGGATTGG
TACGAGCAGTTCGCACCCAGCGACGTCGAGATCGAAGCGGCCGAGATGGG
GTTCGATTGGACCGACCAGTGGTTCGAGGACAACGGGATCACTCGCACAG
ACCTTCCCGAGGAGGGGGACAAGAAGTGAATCGAAGCGGCCGAGATGGGG
TTCGATTGGACCGACCAGTGGTTCGAGGACAACGGGATCACTCGCACAGA
CCTTCCCGAGGAGGGGGACAAGAAGTGA
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