mRNA_P-fluviatile_contig16.2689.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2689.1
Unique NamemRNA_P-fluviatile_contig16.2689.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:875070..875547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2689.1prot_P-fluviatile_contig16.2689.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 875111..875494 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.055116-UTR-P-fluviatile_contig16:875069..8751101622815679.055116-UTR-P-fluviatile_contig16:875069..875110Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 875070..875110 +
1693562884.302906-UTR-P-fluviatile_contig16:875069..8751101693562884.302906-UTR-P-fluviatile_contig16:875069..875110Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 875070..875110 +
1622815679.0838366-UTR-P-fluviatile_contig16:875494..8755471622815679.0838366-UTR-P-fluviatile_contig16:875494..875547Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 875495..875547 +
1693562884.325711-UTR-P-fluviatile_contig16:875494..8755471693562884.325711-UTR-P-fluviatile_contig16:875494..875547Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 875495..875547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.068665-CDS-P-fluviatile_contig16:875110..8754941622815679.068665-CDS-P-fluviatile_contig16:875110..875494Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 875111..875494 +
1693562884.3125432-CDS-P-fluviatile_contig16:875110..8754941693562884.3125432-CDS-P-fluviatile_contig16:875110..875494Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 875111..875494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2689.1

>prot_P-fluviatile_contig16.2689.1 ID=prot_P-fluviatile_contig16.2689.1|Name=mRNA_P-fluviatile_contig16.2689.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=128bp
MTYLEIKRPARLSNAPKPPAVAGQWLGNPAITPEGLLETKRQSTRGRREE
PGKAKTSDRKATSPIANNERVQLTDRYMGPRNQAKRTQTTLNESARTAVS
KHAPTTHANYPRWQTRHTPCGRRKSSP*
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mRNA from alignment at P-fluviatile_contig16:875070..875547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2689.1 ID=mRNA_P-fluviatile_contig16.2689.1|Name=mRNA_P-fluviatile_contig16.2689.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=478bp|location=Sequence derived from alignment at P-fluviatile_contig16:875070..875547+ (Porterinema fluviatile SAG_2381)
GCGGGGTTAAGCTCGGACATGACAGAAATGACACCGCATTCATGACATAT
TTGGAGATAAAACGCCCGGCAAGGCTGTCAAATGCTCCAAAACCGCCCGC
AGTTGCTGGCCAATGGTTGGGAAATCCCGCGATAACACCGGAAGGGTTGC
TTGAAACAAAGCGTCAAAGTACTCGGGGACGGAGAGAAGAGCCGGGGAAA
GCCAAAACCTCCGATCGGAAAGCTACATCGCCAATCGCGAACAACGAGCG
AGTACAACTGACGGACAGGTACATGGGCCCAAGAAACCAAGCCAAGCGCA
CCCAAACTACACTAAATGAATCAGCGAGGACAGCTGTCTCCAAGCACGCG
CCAACCACCCATGCGAACTACCCAAGGTGGCAGACACGCCACACACCTTG
CGGCCGTCGAAAGTCCTCGCCCTGAGGCTGGCCGCTGCCTTGGAGGCCGA
GTCGACAGAGTCGAAGGCCACGAACACG
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:875070..875547+

>mRNA_P-fluviatile_contig16.2689.1 ID=mRNA_P-fluviatile_contig16.2689.1|Name=mRNA_P-fluviatile_contig16.2689.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=768bp|location=Sequence derived from alignment at P-fluviatile_contig16:875070..875547+ (Porterinema fluviatile SAG_2381)
ATGACATATTTGGAGATAAAACGCCCGGCAAGGCTGTCAAATGCTCCAAA
ACCGCCCGCAGTTGCTGGCCAATGGTTGGGAAATCCCGCGATAACACCGG
AAGGGTTGCTTGAAACAAAGCGTCAAAGTACTCGGGGACGGAGAGAAGAG
CCGGGGAAAGCCAAAACCTCCGATCGGAAAGCTACATCGCCAATCGCGAA
CAACGAGCGAGTACAACTGACGGACAGGTACATGGGCCCAAGAAACCAAG
CCAAGCGCACCCAAACTACACTAAATGAATCAGCGAGGACAGCTGTCTCC
AAGCACGCGCCAACCACCCATGCGAACTACCCAAGGTGGCAGACACGCCA
CACACCTTGCGGCCGTCGAAAGTCCTCGCCCTGAATGACATATTTGGAGA
TAAAACGCCCGGCAAGGCTGTCAAATGCTCCAAAACCGCCCGCAGTTGCT
GGCCAATGGTTGGGAAATCCCGCGATAACACCGGAAGGGTTGCTTGAAAC
AAAGCGTCAAAGTACTCGGGGACGGAGAGAAGAGCCGGGGAAAGCCAAAA
CCTCCGATCGGAAAGCTACATCGCCAATCGCGAACAACGAGCGAGTACAA
CTGACGGACAGGTACATGGGCCCAAGAAACCAAGCCAAGCGCACCCAAAC
TACACTAAATGAATCAGCGAGGACAGCTGTCTCCAAGCACGCGCCAACCA
CCCATGCGAACTACCCAAGGTGGCAGACACGCCACACACCTTGCGGCCGT
CGAAAGTCCTCGCCCTGA
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