mRNA_P-fluviatile_contig16.2657.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2657.1
Unique NamemRNA_P-fluviatile_contig16.2657.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:507302..508396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size430
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2657.1prot_P-fluviatile_contig16.2657.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 507302..507604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.908296-CDS-P-fluviatile_contig16:507301..5076041622815678.908296-CDS-P-fluviatile_contig16:507301..507604Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 507302..507604 -
1693562884.2489457-CDS-P-fluviatile_contig16:507301..5076041693562884.2489457-CDS-P-fluviatile_contig16:507301..507604Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 507302..507604 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.9202359-UTR-P-fluviatile_contig16:507604..5077031622815678.9202359-UTR-P-fluviatile_contig16:507604..507703Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 507605..507703 -
1693562884.2643735-UTR-P-fluviatile_contig16:507604..5077031693562884.2643735-UTR-P-fluviatile_contig16:507604..507703Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 507605..507703 -
1622815678.9307544-UTR-P-fluviatile_contig16:508370..5083961622815678.9307544-UTR-P-fluviatile_contig16:508370..508396Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 508371..508396 -
1693562884.2728665-UTR-P-fluviatile_contig16:508370..5083961693562884.2728665-UTR-P-fluviatile_contig16:508370..508396Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 508371..508396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2657.1

>prot_P-fluviatile_contig16.2657.1 ID=prot_P-fluviatile_contig16.2657.1|Name=mRNA_P-fluviatile_contig16.2657.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=101bp
MSLALSGFFGKNVHLLTILTSNYSSRMECFHRCGPGWSFDFSLFRRCLDS
CPLPPSQLGQALGETLDGQLFFNRPHTMQRIAHFIASALPLHQSSPSPVY
S
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mRNA from alignment at P-fluviatile_contig16:507302..508396-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2657.1 ID=mRNA_P-fluviatile_contig16.2657.1|Name=mRNA_P-fluviatile_contig16.2657.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1095bp|location=Sequence derived from alignment at P-fluviatile_contig16:507302..508396- (Porterinema fluviatile SAG_2381)
GACTACCGGAGATTGAAGTCGAAGCGGTGAGAATCCCGCCAAGTATCAGA
GGGAGATATCGGGTAGAAGTTTTGATTCATCAAACAGAGAGAAAACATCC
GGGCGTGTCTCATCATGCTTGACCACATTGCATGGGTCTGCCAACATCCC
CACAGCAGGCGAGGCAATGAGTACAACCACTGCCTCCCTGCCTCCCCTCG
GAGTCGTGATTGCTTTTCTTCCCTTCCTCTGGGTCTTAAGCGGCTAGAAA
TTAGCCTGATGTCAACTGACAAATCCTCGCTGCAGCAGCAGCGTTCTCGT
GCGCTTCGTGCATGCACTGCTCTTTCTGGCACAATGCAAGGCGGTTGGTG
TTCTCGCCTTGCATTATCCTCGCGCCCTGTTGGGTGCGAGCTCGCCGACT
CGTAACAGATTGATTTTTTCTGAACTGAAAGTCTCATGTGAGGGTTGATT
TTCCCTTGTTTGCCCTCGTTTCATTTCAACTGCTGAGTCTACATGTTGCA
GGCGCCCATTCCTTCATGATCGGCCTCATTCCCCTCGAAACGGCACGGCT
GCCTAATCGATCTTGTGTGCATGTTAAAGTTCCCTTGATTCGAGCCGCAG
ACAATCCCAACTGTTGTGCTCCCTTTTTCTTCGAGTAGGACTCTAGTCAG
ACAAAGCTCATTGGACCACTGGTGCGCAATTCTTGCTTGACAGGCTTGGA
CTCAGAAGTTGCTCCCGTCGACCACACGCTCACCAGGCACGGACGACGAC
GGTATACACCCGAGATTGTCCGTGTTCTCGTGAACGGGCTTTATGTCCCT
TGCGCTCAGCGGCTTCTTTGGCAAGAACGTCCATCTTTTGACCATCTTGA
CGTCAAATTATTCTTCGCGAATGGAGTGCTTCCACCGCTGTGGGCCCGGT
TGGTCGTTTGATTTTTCATTGTTTCGACGATGTCTCGACAGCTGCCCCCT
CCCCCCATCTCAGTTGGGACAGGCTTTAGGAGAGACTTTAGACGGACAGC
TTTTTTTTAACCGCCCGCATACAATGCAACGCATTGCACACTTCATTGCG
TCAGCACTTCCTTTGCATCAATCTTCGCCGTCGCCGGTGTATTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:507302..508396-

>mRNA_P-fluviatile_contig16.2657.1 ID=mRNA_P-fluviatile_contig16.2657.1|Name=mRNA_P-fluviatile_contig16.2657.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=606bp|location=Sequence derived from alignment at P-fluviatile_contig16:507302..508396- (Porterinema fluviatile SAG_2381)
ATGTCCCTTGCGCTCAGCGGCTTCTTTGGCAAGAACGTCCATCTTTTGAC
CATCTTGACGTCAAATTATTCTTCGCGAATGGAGTGCTTCCACCGCTGTG
GGCCCGGTTGGTCGTTTGATTTTTCATTGTTTCGACGATGTCTCGACAGC
TGCCCCCTCCCCCCATCTCAGTTGGGACAGGCTTTAGGAGAGACTTTAGA
CGGACAGCTTTTTTTTAACCGCCCGCATACAATGCAACGCATTGCACACT
TCATTGCGTCAGCACTTCCTTTGCATCAATCTTCGCCGTCGCCGGTGTAT
TCGATGTCCCTTGCGCTCAGCGGCTTCTTTGGCAAGAACGTCCATCTTTT
GACCATCTTGACGTCAAATTATTCTTCGCGAATGGAGTGCTTCCACCGCT
GTGGGCCCGGTTGGTCGTTTGATTTTTCATTGTTTCGACGATGTCTCGAC
AGCTGCCCCCTCCCCCCATCTCAGTTGGGACAGGCTTTAGGAGAGACTTT
AGACGGACAGCTTTTTTTTAACCGCCCGCATACAATGCAACGCATTGCAC
ACTTCATTGCGTCAGCACTTCCTTTGCATCAATCTTCGCCGTCGCCGGTG
TATTCG
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