mRNA_P-fluviatile_contig16.2653.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2653.1
Unique NamemRNA_P-fluviatile_contig16.2653.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:471643..472132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.8624008-UTR-P-fluviatile_contig16:471642..4718141622815678.8624008-UTR-P-fluviatile_contig16:471642..471814Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 471643..471814 +
1693562884.227684-UTR-P-fluviatile_contig16:471642..4718141693562884.227684-UTR-P-fluviatile_contig16:471642..471814Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 471643..471814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.8739026-CDS-P-fluviatile_contig16:471814..4721321622815678.8739026-CDS-P-fluviatile_contig16:471814..472132Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 471815..472132 +
1693562884.2406187-CDS-P-fluviatile_contig16:471814..4721321693562884.2406187-CDS-P-fluviatile_contig16:471814..472132Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 471815..472132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2653.1prot_P-fluviatile_contig16.2653.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 471815..472132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2653.1

>prot_P-fluviatile_contig16.2653.1 ID=prot_P-fluviatile_contig16.2653.1|Name=mRNA_P-fluviatile_contig16.2653.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
MKAGGGPPQSVQASTRQMQVPAVAVAIAGCWLDERAPRETRETHDGRVGA
SKKHVHTPSDTNPKACISSSLSMPNPVALSLPLSRGSGHICIPPSCPQNR
GLPPHQ
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mRNA from alignment at P-fluviatile_contig16:471643..472132+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2653.1 ID=mRNA_P-fluviatile_contig16.2653.1|Name=mRNA_P-fluviatile_contig16.2653.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=490bp|location=Sequence derived from alignment at P-fluviatile_contig16:471643..472132+ (Porterinema fluviatile SAG_2381)
ACACGCAGGAGTTCATTCAACCGGGCACACGGTTCGATACGGGCTCGATT
CGCGTGCCGTCGAACGCCAACCATTGCACGTTTCTTGCTCCCGTGCGCAA
CACGCGTGAGGGTTCCATGCGAAAGGCGGGGAATCGAAGGATTTTGTCCG
CGTCAACTGAAATGGTATACATATGAAGGCGGGAGGTGGCCCTCCCCAAA
GCGTTCAGGCATCGACGCGACAGATGCAAGTGCCGGCGGTAGCAGTCGCC
ATTGCGGGATGTTGGTTGGACGAACGGGCTCCTCGCGAGACGCGGGAGAC
GCACGACGGGAGGGTGGGTGCGTCAAAGAAACACGTGCACACACCCTCCG
ATACCAACCCTAAAGCCTGTATCTCGAGTTCCTTGTCGATGCCAAATCCT
GTCGCACTCTCTCTCCCTCTTAGCCGGGGCTCTGGCCACATATGTATCCC
CCCGTCTTGTCCTCAAAATCGCGGGTTGCCCCCACACCAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:471643..472132+

>mRNA_P-fluviatile_contig16.2653.1 ID=mRNA_P-fluviatile_contig16.2653.1|Name=mRNA_P-fluviatile_contig16.2653.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig16:471643..472132+ (Porterinema fluviatile SAG_2381)
ATGAAGGCGGGAGGTGGCCCTCCCCAAAGCGTTCAGGCATCGACGCGACA
GATGCAAGTGCCGGCGGTAGCAGTCGCCATTGCGGGATGTTGGTTGGACG
AACGGGCTCCTCGCGAGACGCGGGAGACGCACGACGGGAGGGTGGGTGCG
TCAAAGAAACACGTGCACACACCCTCCGATACCAACCCTAAAGCCTGTAT
CTCGAGTTCCTTGTCGATGCCAAATCCTGTCGCACTCTCTCTCCCTCTTA
GCCGGGGCTCTGGCCACATATGTATCCCCCCGTCTTGTCCTCAAAATCGC
GGGTTGCCCCCACACCAAATGAAGGCGGGAGGTGGCCCTCCCCAAAGCGT
TCAGGCATCGACGCGACAGATGCAAGTGCCGGCGGTAGCAGTCGCCATTG
CGGGATGTTGGTTGGACGAACGGGCTCCTCGCGAGACGCGGGAGACGCAC
GACGGGAGGGTGGGTGCGTCAAAGAAACACGTGCACACACCCTCCGATAC
CAACCCTAAAGCCTGTATCTCGAGTTCCTTGTCGATGCCAAATCCTGTCG
CACTCTCTCTCCCTCTTAGCCGGGGCTCTGGCCACATATGTATCCCCCCG
TCTTGTCCTCAAAATCGCGGGTTGCCCCCACACCAA
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