mRNA_P-fluviatile_contig1.148.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.148.1
Unique NamemRNA_P-fluviatile_contig1.148.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.148.1 vs. uniprot
Match: A0A6H5K2H0_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H0_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 3.160e-63
Identity = 106/134 (79.10%), Postives = 115/134 (85.82%), Query Frame = 3 
Query:    3 CENAKERGGRIPQGKLRWGIGGPGGHSMKWYCIRPKCLPADQVKDMLVPEKCGSAPAMDGVSELPDGFREATITCLEFINEDKADQLDPAVLAKLDEVGPLIPVVPRATAAATRGDAAPTPPSVGRQGLRRTRR 404
            CEN+KER GRIPQGKLRWGIGGPGGHSM+WYC+RP CLP D+VKDMLVPEKC SA  MDGVSELPDGFREATITCLEFINEDKADQLD A LAKLDEV P+IP+ PR+   A R D  P+PP +GRQGLRR RR
Sbjct:   23 CENSKERQGRIPQGKLRWGIGGPGGHSMRWYCVRPACLPFDEVKDMLVPEKCRSAAEMDGVSELPDGFREATITCLEFINEDKADQLDAATLAKLDEVCPMIPIPPRS---AVR-DPTPSPPIIGRQGLRRARR 152
[Close]
BLAST of mRNA_P-fluviatile_contig1.148.1 vs. uniprot
Match: D7G9H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H8_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 4.320e-23
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 3 
Query:   84 MKWYCIRPKCLPADQVKDMLVPEKCGSAPAMDGVSELPDGFREATITCLEFINE 245
            M+WYC+RP CLP D+VKDMLVPEKC SA  MDGVSELPDGFREATITCLEFINE
Sbjct:    1 MRWYCVRPACLPFDEVKDMLVPEKCRSAAEMDGVSELPDGFREATITCLEFINE 54
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2H0_9PHAE3.160e-6379.10PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G9H8_ECTSI4.320e-2385.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1959313..1962667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_000970.1
Exons4
Model size459
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.148.1prot_P-fluviatile_contig1.148.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1959317..1960206 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.3095298-UTR-P-fluviatile_contig1:1959312..19593161622815296.3095298-UTR-P-fluviatile_contig1:1959312..1959316Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1959313..1959316 -
1693561434.7416084-UTR-P-fluviatile_contig1:1959312..19593161693561434.7416084-UTR-P-fluviatile_contig1:1959312..1959316Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1959313..1959316 -
1622815296.3646681-UTR-P-fluviatile_contig1:1960206..19602131622815296.3646681-UTR-P-fluviatile_contig1:1960206..1960213Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1960207..1960213 -
1693561434.7871323-UTR-P-fluviatile_contig1:1960206..19602131693561434.7871323-UTR-P-fluviatile_contig1:1960206..1960213Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1960207..1960213 -
1622815296.3744147-UTR-P-fluviatile_contig1:1962591..19626671622815296.3744147-UTR-P-fluviatile_contig1:1962591..1962667Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1962592..1962667 -
1693561434.8000364-UTR-P-fluviatile_contig1:1962591..19626671693561434.8000364-UTR-P-fluviatile_contig1:1962591..1962667Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1962592..1962667 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.3222313-CDS-P-fluviatile_contig1:1959316..19593581622815296.3222313-CDS-P-fluviatile_contig1:1959316..1959358Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1959317..1959358 -
1693561434.7530513-CDS-P-fluviatile_contig1:1959316..19593581693561434.7530513-CDS-P-fluviatile_contig1:1959316..1959358Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1959317..1959358 -
1622815296.3328884-CDS-P-fluviatile_contig1:1959432..19596001622815296.3328884-CDS-P-fluviatile_contig1:1959432..1959600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1959433..1959600 -
1693561434.7624996-CDS-P-fluviatile_contig1:1959432..19596001693561434.7624996-CDS-P-fluviatile_contig1:1959432..1959600Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1959433..1959600 -
1622815296.3477693-CDS-P-fluviatile_contig1:1960044..19602061622815296.3477693-CDS-P-fluviatile_contig1:1960044..1960206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1960045..1960206 -
1693561434.7725089-CDS-P-fluviatile_contig1:1960044..19602061693561434.7725089-CDS-P-fluviatile_contig1:1960044..1960206Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1960045..1960206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.148.1

>prot_P-fluviatile_contig1.148.1 ID=prot_P-fluviatile_contig1.148.1|Name=mRNA_P-fluviatile_contig1.148.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=124bp
MKWYCIRPKCLPADQVKDMLVPEKCGSAPAMDGVSELPDGFREATITCLE
FINEDKADQLDPAVLAKLDEVGPLIPVVPRATAAATRGDAAPTPPSVGRQ
GLRRTRRPTARWRRRRRCRGSGQ*
back to top

mRNA from alignment at P-fluviatile_contig1:1959313..1962667-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.148.1 ID=mRNA_P-fluviatile_contig1.148.1|Name=mRNA_P-fluviatile_contig1.148.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3355bp|location=Sequence derived from alignment at P-fluviatile_contig1:1959313..1962667- (Porterinema fluviatile SAG_2381)
CTTGCGAAAACGCGAAGGAGAGAGGCGGTCGCATCCCCCAGGGCAAGCTC
CGCTGGGGCATAGGGGGACCAGGAGGGTGAGAGACTGCGCGAGTTAGAGG
AGGGTGGATCCTGCGCTGCTCTAGCAGTAGCAGGGGCGAAGCTTGAGGGC
ATGAAGGACGTGCGAGTGCCAAACATGATCGCTTTTTCGAACGCGGATGT
TTCATGTCTTGGGCTCGATGCCAAGCATCTTGTCATGTTGTCTCGTCTTC
AACGCACGAGCTCTGCCGCGCCCGCCTTCGCTGCTGATACGCGGATCACC
GCCGCGGAGGACGAATTACGTCGTGCCTTCAAGGCGGTACTGGACGAGTT
TCCCACGTCCGGGGTGTGCAGGGTTTCTAGGGCCAGCGGGAGGGGGGGCA
GAAAAACGCGTGTGTGTGTCGCTCTTTTTTTTCTCACGTTGCAGCAAAGA
TTTAGGCAAAGATTTCATTGCGCCGCTGCTCTCTTTTGCATTATTGATCA
TTTGCAGTTGGGCGGAACACACACAGAGTTGTACACAAATACCCAAGCAT
CGCTCCCGGAAAGGGTAAAGTCCGAGAATTGCTTTTCCTTGAACCATGGT
GGTCTGCATCTAACTATCCATGTGCGTCAGGAGCTTCAAGCGTGAGGGTT
CTTTGTTGGAGTGAAAACGCGATCTCGTCGAGCTCAAGGACCAAATACGG
CTGGGGGAGATTCGCTTTTTCTCTTAATCCCGAGAGGATGTCGAATAATA
TACAGAGCACTCCGTACTTTTCGCATCGACGCCGGGGCTGATCGGCCGAC
AAGCAGGCATGTTTGCGCGTTGTGATGAGTCGATGTGTCGGTGTTGCGTT
TTTCTCGGAACGTTTTTATGTTGATGATGTGTTGGGAATCAGCAAGAGGG
GAAGAGCGAGAGAGAGACCAACCACCTACCAGTAGGTGCATGTAACATGC
AGGCATTCCTCACTACTTGAAACATTTACACCATTCGCGCATGTTCTTAT
TTGAAGTACGGGACCCCTACCTGGCGTGTTGTAGGAGATAGCTCGCTGCT
GCGTCATGAGGGATGGAGCTGCTGATCGCCCGTCGAGATCTAAAGACGGT
GGCGGCTGGAAAACAAACTCTCATCCTCAGTGTGCGCGACCCACACCCGC
ACGGCGCTTTCCGCCCACTGTTGGCAACTTTATCCTGGTTCGAGCGATAC
GGCATCACAAAAGTAGAGAGCAACGCAACATCCAGGGAGCCGAGGACAGC
ATTCTTCGAAGTACGAAAAACCGAAGCAGTTGAAGCTTCCTCAAGCCTTC
GCAGATGTGCTCGAAACACCTGTCTACGCGTGCCATGCCACCGTGGTGAG
GGTTCCGTGTGGCGGCAAGAGCAGTTCTATGCCCCACACACAAGAACCAG
GTCACATCCAGAACCCTTTCCTGCACAACGCCACATTCGGGTACGCTCTT
TTTGTACCTTCATGTCTGACGTCGCGTTACCCTGCGGATCACTCGCGGTG
TTGGGTTCGCCCCGGATCACGGGTAACTTCGTTGTTTAGCTAGGACGTAC
ACCTTCGTCCCGGCTCAATCGCCGCTTCTCTGTGGAAGGTACACCCTCTT
TACGTACCTCAAGAAGGTACACGCGTTTCCGAAAATGTTTTCTCCTCTTG
AATGGAGCATGCCTGTGCGGTACCTTGTCCGTGTACGGCTATCACGAGAA
AGGTGCCCCTTTGCGGTTGTTTTCTTGCCATCTATTGTCTTGTTGGGCGA
CGGCGCTGTTTTGCCTCATTGTGGCGTAGACGCAGACAACACAAGCCGTC
AAACGGCTGCAAGCCTGGCCCTTGAAGCCGACACTTGCGTGGTATGTGGG
CTTCGAGGAAGGCTCTAGGTAGGTCTCCGTGGACATGGCGTAGGTTGGAG
GTCGACGGGCTTGTAGGGGACGTTGACATCGGCCCTGCATCTTGTCATCT
TTAGACATCGGTTCATCCCTCGACTCCCCTCACTCCCCACACAATGCTTG
TCGAGAAATGGGGACAAAAATAAACCGGCGATCGGCTCAAAGCAGGTTTT
TTGCCGGCACAGCTACGGACGAACGAACACACTTGCGCATGCATGCTCAG
CATCGAAGCTGCTCTCTGGACGAATAATGCCTTTCCGATGTGGCAGTGAT
CGGAAAGGTTTCGGTGTGAAGCAACAACGACATCCCGCTCTCGGACCTTC
CCCTCTTTTGTTAATCTCCGCCACACGTGTTCCCCCTCGCCGTCAAAAGT
AACCTTCCGCGGAAGCTAAGAGAGGAAAAAGGTGAACGCGCATTCGATAC
CGCCGTGTGATGCATGTGCCACATCCCGTCATACGCAAGCAGGAGCTCAC
GAACCTCTCCTTGGACCTTTTCCCGTTTTCTTCCCTCCTGCTTTCACTTC
CTTTCCACATTGCTTTCTATGTTTTTTTTTGTTTTCGTTGCTGTGTTCAA
TCAGGCACTCTATGAAGTGGTACTGCATCCGACCCAAATGTCTCCCGGCG
GACCAGGTCAAGGACATGCTGGTGCCCGAGAAGTGCGGGTCGGCGCCGGC
GATGGACGGGGTGTCTGAGCTACCCGACGGCTTCAGGGAGGCCACCATCA
CTTGCTTGGAGTTTATCAACGAGGTGATCTTCAGTGAGGCCTGGCACCAC
TCCCATTTCCTGCTGTGGCTGCTGCTGCTCTCTCTCTCTCCTCGTGTACC
TGCTGTTGACTTTCGGGTCAACTTTGAATCTACCGCTGTTTCACCATGGG
AACCCTCCCTTCCACAAAAGAAAACTCCAATTTTTATCTCCTTGCCTGAG
TGGCCGCCCCGCCTGGAATGGCGACAAACCACCGGAGAAGGTAAGAGTGA
AATGGCGCTGGATAGAACATCAGACGGCATATACGATGATCTTTCGCCGG
CGCCGCCGGCGCCCCCCCCCCCCCTGCCGCTTTCGATCGTGCGCTCATGA
AGCCACGCCGTAGCTCCATCGCTATCTCTATCGCCGTGCACCTTTCCTCC
TCTCCCTTCCCCTTCTCACACGTAACACCGTACTGCTCTTGTCCGTGCTT
TCACGTTTGCTACGCAGGACAAGGCGGACCAGCTTGACCCCGCCGTGCTG
GCCAAGCTTGACGAGGTGGGTCCGCTGATTCCCGTAGTGCCTCGCGCCAC
AGCCGCCGCAACCCGCGGGGACGCCGCTCCCACGCCCCCATCCGTCGGCC
GCCAGGGGCTCCGCCGAACGAGACGTCCCACGGCGGCGGCTGCCGCCGCT
GCCTCCGGCGGCGGCGGCGGTGGCACTGCCGTGTCCTCTGTCAGCGGCGG
CGGCGGCAGCGATGGCGACGGAGACGAAGATGCCGAGGATCAGGACAGTG
ACGAA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:1959313..1962667-

>mRNA_P-fluviatile_contig1.148.1 ID=mRNA_P-fluviatile_contig1.148.1|Name=mRNA_P-fluviatile_contig1.148.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=744bp|location=Sequence derived from alignment at P-fluviatile_contig1:1959313..1962667- (Porterinema fluviatile SAG_2381)
ATGAAGTGGTACTGCATCCGACCCAAATGTCTCCCGGCGGACCAGGTCAA
GGACATGCTGGTGCCCGAGAAGTGCGGGTCGGCGCCGGCGATGGACGGGG
TGTCTGAGCTACCCGACGGCTTCAGGGAGGCCACCATCACTTGCTTGGAG
TTTATCAACGAGATGAAGTGGTACTGCATCCGACCCAAATGTCTCCCGGC
GGACCAGGTCAAGGACATGCTGGTGCCCGAGAAGTGCGGGTCGGCGCCGG
CGATGGACGGGGTGTCTGAGCTACCCGACGGCTTCAGGGAGGCCACCATC
ACTTGCTTGGAGTTTATCAACGAGGACAAGGCGGACCAGCTTGACCCCGC
CGTGCTGGCCAAGCTTGACGAGGTGGGTCCGCTGATTCCCGTAGTGCCTC
GCGCCACAGCCGCCGCAACCCGCGGGGACGCCGCTCCCACGCCCCCATCC
GTCGGCCGCCAGGGGCTCCGCCGAACGAGACGTCCCACGGCGGACAAGGC
GGACCAGCTTGACCCCGCCGTGCTGGCCAAGCTTGACGAGGTGGGTCCGC
TGATTCCCGTAGTGCCTCGCGCCACAGCCGCCGCAACCCGCGGGGACGCC
GCTCCCACGCCCCCATCCGTCGGCCGCCAGGGGCTCCGCCGAACGAGACG
TCCCACGGCGCGATGGCGACGGAGACGAAGATGCCGAGGATCAGGACAGT
GACGATGGCGACGGAGACGAAGATGCCGAGGATCAGGACAGTGA
back to top