mRNA_P-fluviatile_contig15.2349.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2349.1
Unique NamemRNA_P-fluviatile_contig15.2349.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2349.1 vs. uniprot
Match: Q8QKW1_ESV1K (EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K)

HSP 1 Score: 272 bits (696), Expect = 2.710e-91
Identity = 135/176 (76.70%), Postives = 153/176 (86.93%), Query Frame = 1 
Query:    1 MFKAAGSRVFSGGARGALFGVAAGFVLGAVGNVFSDGLATVDVVTWKDQRGRTKKFTHLDTLEPFDIYKDLLTLHNGRECDEEAFNDACSHIQSVAYLYKRFIDKEE--AAIMDHRKITNYSVMATKSMNALLVSSRAKNYPQSSDVEESMMHIHLTFEEIINGVRHVSKDVLPSL 522
            MFK A S+ F GGARGA+FG+  GFVLGAVGNVF+DGL+TVDVV WKD+RG TKKF  L+ LE FDIYKDLL +H+ RECD EAFNDAC HIQSVAYLYKRF+DK E  A+IMD RKITNYS+MATKSMNALL+S RAKNYP+SSDVE+SMM +HLTFEEIINGVRHVSKD+LP +
Sbjct:    1 MFKNAASKAFGGGARGAMFGILGGFVLGAVGNVFADGLSTVDVVYWKDRRGTTKKFADLEVLESFDIYKDLLVIHSARECDMEAFNDACRHIQSVAYLYKRFLDKGEDKASIMDCRKITNYSIMATKSMNALLISCRAKNYPESSDVEKSMMQLHLTFEEIINGVRHVSKDILPEI 176
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BLAST of mRNA_P-fluviatile_contig15.2349.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.070e-45
Identity = 84/114 (73.68%), Postives = 94/114 (82.46%), Query Frame = 1 
Query:  151 GRTKKFTHLDTLEPFDIYKDLLTLHNGRECDEEAFNDACSHIQSVAYLYKRF-IDKEEA-AIMDHRKITNYSVMATKSMNALLVSSRAKNYPQSSDVEESMMHIHLTFEEIING 486
            G+ +KF  L+ LE FDIYKDLL LH+ RECDEEAF DAC HIQSV YLY RF +DK    +IM   KITNYS+MATKSMNALL+S RAKNYPQSSDVE+SMMHIHLTFE+IING
Sbjct:  155 GQNQKFADLEVLESFDIYKDLLELHSARECDEEAFCDACRHIQSVIYLYNRFLVDKTRTVSIMKSHKITNYSIMATKSMNALLISCRAKNYPQSSDVEKSMMHIHLTFEDIING 268
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BLAST of mRNA_P-fluviatile_contig15.2349.1 vs. uniprot
Match: Q6XM43_9PHYC (FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC)

HSP 1 Score: 81.6 bits (200), Expect = 3.130e-16
Identity = 56/173 (32.37%), Postives = 91/173 (52.60%), Query Frame = 1 
Query:   19 SRVFSGGARGALFGVAAGFVLGAVGNVFSDGLATVDVVTWKDQRGRTKKFTHLDTLEPFDIYKDLLTLHNGRECDEEAFNDACSHIQSVAYLY-----KRFIDKEEAAIMDHRKITNYSVMATKSMNALLVSSRAKNYPQSSDVEESMMHIHLTFEEIINGVRHVSKDVLPSL 522
            S +  G  +G L+G+  G  LGA G +      T + + W   +G+  +  +L  +     +  ++  H  R  +E AFN+A  +IQ+V  +Y      R  D +   IM   K+TNY+V A+K+M A+ VS    ++ +++  EE+MM I LT EE IN +R  SK  LP++
Sbjct:    3 SALMKGCFKGGLYGLCGGIFLGAAGALTPS--QTPEQLVWTTHQGKKVRLVYLHHVPGLKDHLTVIFQHRTR--NERAFNEAFRNIQNVLSVYHLSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLPTI 171
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QKW1_ESV1K2.710e-9176.70EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K[more]
A0A6H5KJD3_9PHAE4.070e-4573.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XM43_9PHYC3.130e-1632.37FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:22297..22821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size525
Cds size525
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.7456186-CDS-P-fluviatile_contig15:22296..228211622815642.7456186-CDS-P-fluviatile_contig15:22296..22821Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 22297..22821 -
1693562652.293368-CDS-P-fluviatile_contig15:22296..228211693562652.293368-CDS-P-fluviatile_contig15:22296..22821Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 22297..22821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2349.1prot_P-fluviatile_contig15.2349.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 22297..22821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2349.1

>prot_P-fluviatile_contig15.2349.1 ID=prot_P-fluviatile_contig15.2349.1|Name=mRNA_P-fluviatile_contig15.2349.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=175bp
MFKAAGSRVFSGGARGALFGVAAGFVLGAVGNVFSDGLATVDVVTWKDQR
GRTKKFTHLDTLEPFDIYKDLLTLHNGRECDEEAFNDACSHIQSVAYLYK
RFIDKEEAAIMDHRKITNYSVMATKSMNALLVSSRAKNYPQSSDVEESMM
HIHLTFEEIINGVRHVSKDVLPSL*
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mRNA from alignment at P-fluviatile_contig15:22297..22821-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2349.1 ID=mRNA_P-fluviatile_contig15.2349.1|Name=mRNA_P-fluviatile_contig15.2349.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=525bp|location=Sequence derived from alignment at P-fluviatile_contig15:22297..22821- (Porterinema fluviatile SAG_2381)
ATGTTTAAGGCGGCAGGATCGCGCGTTTTCAGCGGAGGAGCAAGGGGGGC
CCTTTTCGGAGTCGCCGCGGGCTTTGTGCTGGGTGCGGTCGGAAACGTCT
TCTCAGACGGCCTGGCAACCGTCGACGTCGTGACGTGGAAAGATCAACGG
GGACGGACGAAGAAATTCACGCACCTCGATACACTGGAGCCCTTCGATAT
CTACAAGGACCTCCTCACCTTGCACAATGGCAGGGAGTGTGACGAAGAGG
CGTTCAACGACGCGTGCAGCCACATACAGAGCGTAGCCTACCTCTACAAG
CGCTTCATCGACAAGGAAGAGGCGGCCATAATGGACCACAGGAAGATCAC
AAACTACTCCGTCATGGCGACCAAGAGCATGAACGCTCTTCTGGTCTCGA
GCAGGGCCAAGAACTACCCACAGAGCTCCGACGTGGAGGAGTCCATGATG
CACATTCACCTGACGTTCGAAGAGATCATCAATGGGGTGAGGCACGTTTC
AAAGGATGTGCTGCCGAGCCTATGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:22297..22821-

>mRNA_P-fluviatile_contig15.2349.1 ID=mRNA_P-fluviatile_contig15.2349.1|Name=mRNA_P-fluviatile_contig15.2349.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1050bp|location=Sequence derived from alignment at P-fluviatile_contig15:22297..22821- (Porterinema fluviatile SAG_2381)
ATGTTTAAGGCGGCAGGATCGCGCGTTTTCAGCGGAGGAGCAAGGGGGGC
CCTTTTCGGAGTCGCCGCGGGCTTTGTGCTGGGTGCGGTCGGAAACGTCT
TCTCAGACGGCCTGGCAACCGTCGACGTCGTGACGTGGAAAGATCAACGG
GGACGGACGAAGAAATTCACGCACCTCGATACACTGGAGCCCTTCGATAT
CTACAAGGACCTCCTCACCTTGCACAATGGCAGGGAGTGTGACGAAGAGG
CGTTCAACGACGCGTGCAGCCACATACAGAGCGTAGCCTACCTCTACAAG
CGCTTCATCGACAAGGAAGAGGCGGCCATAATGGACCACAGGAAGATCAC
AAACTACTCCGTCATGGCGACCAAGAGCATGAACGCTCTTCTGGTCTCGA
GCAGGGCCAAGAACTACCCACAGAGCTCCGACGTGGAGGAGTCCATGATG
CACATTCACCTGACGTTCGAAGAGATCATCAATGGGGTGAGGCACGTTTC
AAAGGATGTGCTGCCGAGCCTATGAATGTTTAAGGCGGCAGGATCGCGCG
TTTTCAGCGGAGGAGCAAGGGGGGCCCTTTTCGGAGTCGCCGCGGGCTTT
GTGCTGGGTGCGGTCGGAAACGTCTTCTCAGACGGCCTGGCAACCGTCGA
CGTCGTGACGTGGAAAGATCAACGGGGACGGACGAAGAAATTCACGCACC
TCGATACACTGGAGCCCTTCGATATCTACAAGGACCTCCTCACCTTGCAC
AATGGCAGGGAGTGTGACGAAGAGGCGTTCAACGACGCGTGCAGCCACAT
ACAGAGCGTAGCCTACCTCTACAAGCGCTTCATCGACAAGGAAGAGGCGG
CCATAATGGACCACAGGAAGATCACAAACTACTCCGTCATGGCGACCAAG
AGCATGAACGCTCTTCTGGTCTCGAGCAGGGCCAAGAACTACCCACAGAG
CTCCGACGTGGAGGAGTCCATGATGCACATTCACCTGACGTTCGAAGAGA
TCATCAATGGGGTGAGGCACGTTTCAAAGGATGTGCTGCCGAGCCTATGA
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