mRNA_P-fluviatile_contig15.2495.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2495.1
Unique NamemRNA_P-fluviatile_contig15.2495.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:1817158..1817537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size380
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2495.1prot_P-fluviatile_contig15.2495.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 1817210..1817518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.077638-UTR-P-fluviatile_contig15:1817157..18172091622815642.077638-UTR-P-fluviatile_contig15:1817157..1817209Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1817158..1817209 +
1693562651.2510173-UTR-P-fluviatile_contig15:1817157..18172091693562651.2510173-UTR-P-fluviatile_contig15:1817157..1817209Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1817158..1817209 +
1622815642.1038496-UTR-P-fluviatile_contig15:1817518..18175371622815642.1038496-UTR-P-fluviatile_contig15:1817518..1817537Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1817519..1817537 +
1693562652.0372674-UTR-P-fluviatile_contig15:1817518..18175371693562652.0372674-UTR-P-fluviatile_contig15:1817518..1817537Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1817519..1817537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.090461-CDS-P-fluviatile_contig15:1817209..18175181622815642.090461-CDS-P-fluviatile_contig15:1817209..1817518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1817210..1817518 +
1693562651.2697875-CDS-P-fluviatile_contig15:1817209..18175181693562651.2697875-CDS-P-fluviatile_contig15:1817209..1817518Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1817210..1817518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2495.1

>prot_P-fluviatile_contig15.2495.1 ID=prot_P-fluviatile_contig15.2495.1|Name=mRNA_P-fluviatile_contig15.2495.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=103bp
MWKDTERARLVCVCQQTATRGRQMVGLADTITQTKASESEPCAQARLPSH
KRTRVKSNCAHMGKTHTRFFSSFLSRSARRVDRTPEWKKNSSTRWVRPID
LR*
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mRNA from alignment at P-fluviatile_contig15:1817158..1817537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2495.1 ID=mRNA_P-fluviatile_contig15.2495.1|Name=mRNA_P-fluviatile_contig15.2495.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=380bp|location=Sequence derived from alignment at P-fluviatile_contig15:1817158..1817537+ (Porterinema fluviatile SAG_2381)
GAGGGGTAAAAGGGAGGGAGAGAGAGAGGGCATTTGGGGGATTGAATGGG
TGATGTGGAAAGACACCGAGCGAGCGAGGCTCGTCTGTGTGTGCCAGCAG
ACAGCCACGAGAGGAAGACAGATGGTTGGACTCGCCGACACAATCACGCA
AACGAAAGCATCGGAGAGCGAGCCGTGTGCACAAGCGCGATTGCCATCAC
ATAAGCGTACCCGTGTCAAGTCAAACTGCGCCCACATGGGGAAAACACAC
ACGCGCTTCTTCTCTTCATTTCTGTCGCGCTCTGCGCGTCGCGTCGATCG
AACCCCTGAATGGAAAAAAAACTCGTCAACCAGATGGGTGCGCCCTATTG
ACTTGCGATAGAAGGGACAGCCGATCCCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:1817158..1817537+

>mRNA_P-fluviatile_contig15.2495.1 ID=mRNA_P-fluviatile_contig15.2495.1|Name=mRNA_P-fluviatile_contig15.2495.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=618bp|location=Sequence derived from alignment at P-fluviatile_contig15:1817158..1817537+ (Porterinema fluviatile SAG_2381)
ATGTGGAAAGACACCGAGCGAGCGAGGCTCGTCTGTGTGTGCCAGCAGAC
AGCCACGAGAGGAAGACAGATGGTTGGACTCGCCGACACAATCACGCAAA
CGAAAGCATCGGAGAGCGAGCCGTGTGCACAAGCGCGATTGCCATCACAT
AAGCGTACCCGTGTCAAGTCAAACTGCGCCCACATGGGGAAAACACACAC
GCGCTTCTTCTCTTCATTTCTGTCGCGCTCTGCGCGTCGCGTCGATCGAA
CCCCTGAATGGAAAAAAAACTCGTCAACCAGATGGGTGCGCCCTATTGAC
TTGCGATAGATGTGGAAAGACACCGAGCGAGCGAGGCTCGTCTGTGTGTG
CCAGCAGACAGCCACGAGAGGAAGACAGATGGTTGGACTCGCCGACACAA
TCACGCAAACGAAAGCATCGGAGAGCGAGCCGTGTGCACAAGCGCGATTG
CCATCACATAAGCGTACCCGTGTCAAGTCAAACTGCGCCCACATGGGGAA
AACACACACGCGCTTCTTCTCTTCATTTCTGTCGCGCTCTGCGCGTCGCG
TCGATCGAACCCCTGAATGGAAAAAAAACTCGTCAACCAGATGGGTGCGC
CCTATTGACTTGCGATAG
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