mRNA_P-fluviatile_contig1.146.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.146.1
Unique NamemRNA_P-fluviatile_contig1.146.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.146.1 vs. uniprot
Match: D7G9E5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 9.950e-18
Identity = 51/91 (56.04%), Postives = 61/91 (67.03%), Query Frame = 2 
Query:  530 DRVQYLQGLFRTHEKKNMTFEMLAERTDSCLYDRPDIQRAFLGIFAQMTLTDSRRSTYPHDAVAGNVGAAFTTIGDSFAASSRAGETGGRG 802
            DRV+YL+GL RTHEKK+MTF ML ERTDSCLYDR DIQ+ F+ IF +M L D R S Y + A     GA +TT G  +  SSR   + G G
Sbjct:   19 DRVEYLKGLLRTHEKKSMTFRMLTERTDSCLYDREDIQKGFVEIFGEMELPDPRSSAYRNAAAVALPGADYTT-GGGYGVSSRPSRSVGHG 108
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BLAST of mRNA_P-fluviatile_contig1.146.1 vs. uniprot
Match: A0A6H5K2H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.660e-16
Identity = 55/112 (49.11%), Postives = 70/112 (62.50%), Query Frame = 2 
Query:  473 IRPSLSCYLWWGYA--NVFEQDRVQYLQGLFRTHEKKNMTFEMLAERTDSCLYDRPDIQRAFLGIFAQMTLTDSRRSTYPHDAVAGNVGAAFTTIGDSFAASSRAGETGGRG 802
            + P   C++   +A  +    DRV+YL+GL RTHEKK+MTF ML ERTDSCLYDR DIQ+ F+ IF +M L D R S Y + A     GA +TT G  +  SSR+    GRG
Sbjct: 1144 LTPMEKCWMLVDFARRDGLPTDRVEYLKGLLRTHEKKSMTFRMLTERTDSCLYDREDIQQGFVEIFGEMELPDPRSSAYRNAAAVAVPGADYTT-GGGYGVSSRSSRCVGRG 1254
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9E5_ECTSI9.950e-1856.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2H5_9PHAE1.660e-1649.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1929193..1933587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size3027
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.146.1prot_P-fluviatile_contig1.146.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1929596..1931536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.062559-UTR-P-fluviatile_contig1:1929192..19295951622815296.062559-UTR-P-fluviatile_contig1:1929192..1929595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1929193..1929595 +
1693561434.5445585-UTR-P-fluviatile_contig1:1929192..19295951693561434.5445585-UTR-P-fluviatile_contig1:1929192..1929595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1929193..1929595 +
1622815296.1067662-UTR-P-fluviatile_contig1:1931536..19335871622815296.1067662-UTR-P-fluviatile_contig1:1931536..1933587Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1931537..1933587 +
1693561434.582541-UTR-P-fluviatile_contig1:1931536..19335871693561434.582541-UTR-P-fluviatile_contig1:1931536..1933587Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1931537..1933587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815296.073431-CDS-P-fluviatile_contig1:1929595..19297871622815296.073431-CDS-P-fluviatile_contig1:1929595..1929787Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1929596..1929787 +
1693561434.553619-CDS-P-fluviatile_contig1:1929595..19297871693561434.553619-CDS-P-fluviatile_contig1:1929595..1929787Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1929596..1929787 +
1622815296.0854797-CDS-P-fluviatile_contig1:1930545..19306071622815296.0854797-CDS-P-fluviatile_contig1:1930545..1930607Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1930546..1930607 +
1693561434.5630429-CDS-P-fluviatile_contig1:1930545..19306071693561434.5630429-CDS-P-fluviatile_contig1:1930545..1930607Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1930546..1930607 +
1622815296.0965958-CDS-P-fluviatile_contig1:1931217..19315361622815296.0965958-CDS-P-fluviatile_contig1:1931217..1931536Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1931218..1931536 +
1693561434.573402-CDS-P-fluviatile_contig1:1931217..19315361693561434.573402-CDS-P-fluviatile_contig1:1931217..1931536Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1931218..1931536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.146.1

>prot_P-fluviatile_contig1.146.1 ID=prot_P-fluviatile_contig1.146.1|Name=mRNA_P-fluviatile_contig1.146.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=191bp
MSIQRLNSRSTLSGMGVSCDAASIRPSLSCYLWWGYANVFEQDRVQYLQG
LFRTHEKKNMTFEMLAERTDSCLYDRPDIQRAFLGIFAQMTLTDSRRSTY
PHDAVAGNVGAAFTTIGDSFAASSRAGETGGRGQGPSEYPYGTVGVEAPS
SSYHRASSSSAVAAGAPPPAATAIAPAPANGSAFLRDEMA*
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mRNA from alignment at P-fluviatile_contig1:1929193..1933587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.146.1 ID=mRNA_P-fluviatile_contig1.146.1|Name=mRNA_P-fluviatile_contig1.146.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4395bp|location=Sequence derived from alignment at P-fluviatile_contig1:1929193..1933587+ (Porterinema fluviatile SAG_2381)
ACTGGTTTCGTCCTCGTTGTTGTTCCTTGTCGTCGGACGCGGCGGAGTAG
TGATTTTTGTGTTTCGCGTGGTGGGCATGTTACTATAGCCTCTTAGTCTC
ACTTTGTGCTTGCTCCCACGGCATGTCGGGTATGTTTTTGCTCGTTGCCG
ACAACAAAACAAAGGCTTTCGGCGTGCTGCTGTGAAAACGGTTTTCGACT
CACAGCGCGCGTCGAGATTTCGGGAGGGTGGCGTGACATTCGCCGTTCAC
TGCTGTTGTCTGTGCGTGTCTGGACTGTCAAGGCTCGTACCCCCGACCTT
GTACGACGTGAGCGCAGCGAAGCACTCCACGGCCCACGCCCTTGTGATGC
CTTGCACCGAGAGTTTTCGAGACTAACCACGTGCGCGCTGCAGCCCCCCA
CTGATGTCCATCCAACGTCTAAATAGCCGCTCCACGCTCTCGGGTATGGG
TGTTTCTTGCGACGCCGCCTCAATCCGCCCCTCGTTGTCCTGCTATCTGT
GGTGGGGATATGCGAACGTCTTCGAGCAGGACCGGGTGCAGTACCTGCAA
GGACTGTTCAGGACCCACGAGAAGAAGAACATGACCTTCGAAATGGTGAG
AGAAAGGGAACATTCGCGTTCAAAAGGGCGAGCTCGAAATACTCCTAATG
TTAGCCGGTAGTAGCGGCCTGCGTCCAACCGTCAGCATGAAAATCAAAAA
CTTCAGAATCCTCTCCGACATCTTCAACCGCCTGATACAACTACCATCGC
GAGTTTTGATCTGCCGATACAGAGGCGCCTGTTGTGTTCAGTTGGATATA
CGGCAGCTCTGTTGACAATCTGAAATATTACGGTTCGAAATTTTCCAGGG
AGGCGGCAGCGATAATGCTCGCTGCCTTCGTTCGAGCTTTTGCCCCCTTC
AACCTGGTACAAAATTGCCAAGCTTTTATTTTTTTGAAAAAAAAAGGTAG
TGGGTACGCTCGCAGCCACTGCAGCATTCGCGGTGAGTGTGATGGCAGCG
ATTCTGTCGCCACTATACCCGACATCGCACAGCCGTCGGTAGTGGTGTTG
ATGCTCCCACCATGACAAGGCAGCAACCAAGAACTTTGAAACGGCTCCAG
TTCAAAATTCTCGGAGTTCAGCAAAGATCAAGACCGGCCAACACATGGTG
AAGTAGAGTCATGGCAAGCGTTTGCGCCTCAACACCTCCTGTCGTCATCC
GTGTTCCGATCAGTATCGAACTTATAATCTACGCGCCGTTCTGCTTCTTC
CGCGGGCGATCGCTCGCACTGCGATGCTGGTTCTACACCTGATCTTATGG
CGTCACGCGCGTCCTCGATCCGCCATTTATCCCTGCCTCCTCCCTCCCTC
AAGCTGGCGGAGCGCACCGACAGCTGCCTCTACGACCGACCCGACATCCA
AAGGGCTTTTCTCGGGTAAGCAGTTGATGAGGTATTCGTTTTGTTGCGCC
ACGCGTCACCGGATAACCTACCACGTGGTTTCTCGTATTCGGACGTTGAA
ATTGTCGCTTTCGAATTTGAACCAGCAACTGGATACCAAATGTGTGGAAG
TGCGCAACCCAAACAGAGGGGTTAGCAAGCTTCCGCCCGCGGTCGTTTCG
AAATACATGCCGCGGGCTACCGGCGGCTCAGTGAAGTTGTTTTCGTCGGG
GATGAGTTGCTGTGTTGTTGTTTTGTAGGCGCGCACGGCTGTTACCGCTG
CCAGCAAGAGTCTCGTGTGTGTCATGACGTTGTCTCAAGTGATAATGATC
GAGCAATTTTTGTTTCTGAGGGGCAAAAACCTCCACGAGTGCACGCAAGG
AGTAGCGAGACGACGCACCCGTCGCGGCACCAGCTTCTTCATTTCCAGGA
AACCTTTTTACGGCCGTACACCAAGCATTGATCCCTTCTATGATCCGAAA
GCCTTCTGCTTGAAGCTCTGCAGCCTCCAAGGCCTCCTCTCGATCGTTTG
AACGGTTCGTCTCGCTTCCTTTGACCTCTACTAAAATGATTGCGTGCATT
CGTGCCCATGCCCCCCTCTCTCCAGGATTTTCGCGCAGATGACGCTGACG
GACTCCCGGCGCAGCACCTACCCTCACGACGCCGTTGCCGGAAACGTCGG
TGCCGCCTTCACCACCATTGGAGACAGCTTCGCAGCGAGCTCCCGAGCCG
GCGAGACCGGGGGCCGCGGGCAGGGCCCTTCGGAATACCCCTACGGCACC
GTCGGGGTTGAAGCGCCGTCGTCGTCGTACCACCGGGCTTCCTCCTCCAG
CGCTGTCGCTGCCGGCGCTCCTCCTCCTGCTGCGACTGCGATCGCTCCTG
CTCCTGCTAACGGTTCGGCTTTTTTGCGAGATGAGATGGCGTAGCGAGTG
GCCGCGGAGGTGACCGATTCCAAACCAATGTTCCTCTCTTTCGCTGCTGC
TGCCGCTGCTGCTGCTGCTGCTAGCGGACCTGGAGCCGGGGAAGACGGGC
GCTCGGAGACTCAATTGCGAAGCGAACCCCTCGGCGGTGGCCAGGAGTCG
TCGTCGCGGCAGTCAATCTACCCGGCGTAGTCTGATGTAGGATACCTTCA
CGATGTGACTCGGATGGGCAGGCCGTCTGCAGAGGTCTCGGCGAAAACAT
AGGAATACGGTACCGTGCATGGGGAACCTGCGGCAGGAAGAGCGGGAGCA
GCAGGAGGAAGAGGAGGAGGAGGGGCCGCTGTGGCGGTGCCAACAACCCT
CGCTGCCGCTGGAGCCGGTCCTTCCTGACGGCGACGGTTAGCAAGTTGCC
TGGGGTTGCTGTGGGCGTTCCCGCACACGATCCCGTTGTTGGTACGGTTG
GCGATAGCTGGCTAAATCGTGCCGCTCCAATCCGGGATCGGATGCGGTCA
ACACCAAAGGGGCTTTCCCGTAACGAACCAAAGTCGTTATTTGTGAGCAA
AGGCTGCGGATACTCGCTGTACGTCTGTCAAACAGGCCGGCAGTGGCTGC
ACTTGGATTCAAATCTTCGTCAAATGCTGTTGAGGCAGATTGGAAGGGAT
AATTTACGAGCGGGCACGTCAACGCGGACTTGAATGTTAATGGATTTGAA
GGCTATGGTCAAGTGGTTCTTCTCTCCGCCGGCGCTGTTTCGAGATAATT
TGAACGGGGACGCAGCCCAAGCTCTCGCGCTTTGCCTTCAAGACTGGGAG
GGATTTTTGTGACGTTTTGCACGAGGAGCGACAGGCTTCGAATTTCTCAT
GAAGGCAGTATGGTTTCCACAAGGACTCACAGCGCAAGCGTCTCGTGACC
GGGGTGGTGTGGAAAGTGAGGCGAGACAACGATTCCGCTTCGAGAAGTTC
ATCGAACTCATAGATAAAGCCGGTCGTTGCCTCCTGCACGCCGCTTGGGT
GTCGATGGACTTAGCAAGTGGAGCGATTGTGGATGAGGGAAGGAAGATGG
ATATCGAGCAGGTGTGGCTCTGTAGAGGGGAAATGCGCGCAAGGCCAGCC
GGTTTGTTCTGGCTCCAAGTGAACTTTTGGTATCTTTTCGAAATATTGTG
GTCGTTCAGGAGGTTTCGCAGGTTCCATTCGAAAGTTGGCAAGGGACATG
TTTCCCGCCGGAAGGCATGATGTTGCCTCTTCTTTCGCATCAATTTTCGG
GTTTCAACGAAGTTGTCCGAGAAACGGTATTTTGCTCAGCAGGGGTCATC
AATCAACCACTCGAAGACACGAAAAGAAGCAATGGCAGCATTTTTTTTAT
TGTGAGTGGCCTATCTCGGAAAACGCCCATCCGCTGGTGCTGCCTTCCCC
ATCAGTGTCGGTTGTGGTTCTTCTGAAGGCAGAGGCCGACGAAGATAGTG
GACTCAGCTGCGAGCCCTGAGAACTTCAGTCACGGTGAATGAAGCAACAG
AGATGCTCTTGTTTTACAAGTTCCAAGCGTGTGCGAAATTTGAAAGTTTC
GCTCTTGTGATGCGCGGTATGTGTACGCACATTGGCGGAGATTATTTGTT
GAAAACGGGGCCGTGCAGCATGGGAGAAAGAACAGTAGCAATTACTTGAA
TGAGTCTCTTGGCTTAGACATGTTTTTCTTTTTTGGCTCTGTCGTCCCGA
TGGTAGATGATGTCCTCTTGGCTTTATTCTACCAGCCGGGCTCGGGCGGT
GTGTTTTCTTTGATAATTGCGAGCGAGCGTGCACCGCGGTCTCGTGGTGG
GTGTGTTCGGGGTGTCTTGTGTGCGTGATGTGTGCGGGCGGTCGATTATT
TGCTGTTGGAGTACAGTAAAATTAAGAATATTTGTTGTGTTGTTTCTTTC
TTTAACGTAAATTGGACAAACAAGTATCGCCTATTGCGGGTTTGGTTTCG
AGGCGTCTGCCGACGCAACTGACTTGATCGTGCGAATGGATTTCGGCTCC
GGTGACTTGAGAGAATCGAGTGGTTTACATACCGAGACTCGAGAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1929193..1933587+

>mRNA_P-fluviatile_contig1.146.1 ID=mRNA_P-fluviatile_contig1.146.1|Name=mRNA_P-fluviatile_contig1.146.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1146bp|location=Sequence derived from alignment at P-fluviatile_contig1:1929193..1933587+ (Porterinema fluviatile SAG_2381)
ATGTCCATCCAACGTCTAAATAGCCGCTCCACGCTCTCGGGTATGGGTGT
TTCTTGCGACGCCGCCTCAATCCGCCCCTCGTTGTCCTGCTATCTGTGGT
GGGGATATGCGAACGTCTTCGAGCAGGACCGGGTGCAGTACCTGCAAGGA
CTGTTCAGGACCCACGAGAAGAAGAACATGACCTTCGAAATGATGTCCAT
CCAACGTCTAAATAGCCGCTCCACGCTCTCGGGTATGGGTGTTTCTTGCG
ACGCCGCCTCAATCCGCCCCTCGTTGTCCTGCTATCTGTGGTGGGGATAT
GCGAACGTCTTCGAGCAGGACCGGGTGCAGTACCTGCAAGGACTGTTCAG
GACCCACGAGAAGAAGAACATGACCTTCGAAATGCTGGCGGAGCGCACCG
ACAGCTGCCTCTACGACCGACCCGACATCCAAAGGGCTTTTCTCGGCTGG
CGGAGCGCACCGACAGCTGCCTCTACGACCGACCCGACATCCAAAGGGCT
TTTCTCGGGATTTTCGCGCAGATGACGCTGACGGACTCCCGGCGCAGCAC
CTACCCTCACGACGCCGTTGCCGGAAACGTCGGTGCCGCCTTCACCACCA
TTGGAGACAGCTTCGCAGCGAGCTCCCGAGCCGGCGAGACCGGGGGCCGC
GGGCAGGGCCCTTCGGAATACCCCTACGGCACCGTCGGGGTTGAAGCGCC
GTCGTCGTCGTACCACCGGGCTTCCTCCTCCAGCGCTGTCGCTGCCGGCG
CTCCTCCTCCTGCTGCGACTGCGATCGCTCCTGCTCCTGCTAACGGTTCG
GCTTTTTTGCGAGATGAGATGGCGTAGGATTTTCGCGCAGATGACGCTGA
CGGACTCCCGGCGCAGCACCTACCCTCACGACGCCGTTGCCGGAAACGTC
GGTGCCGCCTTCACCACCATTGGAGACAGCTTCGCAGCGAGCTCCCGAGC
CGGCGAGACCGGGGGCCGCGGGCAGGGCCCTTCGGAATACCCCTACGGCA
CCGTCGGGGTTGAAGCGCCGTCGTCGTCGTACCACCGGGCTTCCTCCTCC
AGCGCTGTCGCTGCCGGCGCTCCTCCTCCTGCTGCGACTGCGATCGCTCC
TGCTCCTGCTAACGGTTCGGCTTTTTTGCGAGATGAGATGGCGTAG
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