mRNA_P-fluviatile_contig15.2356.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2356.1
Unique NamemRNA_P-fluviatile_contig15.2356.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2356.1 vs. uniprot
Match: A0A6H5JJ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ87_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.480e-7
Identity = 71/250 (28.40%), Postives = 113/250 (45.20%), Query Frame = 2 
Query: 1079 RDTRAIFRQRMVAHAQAVLLSLLGVALTFTSWHDHEG-PFS-LVERLGRQCVGMKFVGLLFALFVALGAFRKGGVDNGCAGPPILMVWGATAAGLDPSMFCLALCGFSI------ISPKPVNF--DGFLAMTGQMMLSMPVVMFFLVFTIPTALHSQKLLSDAAQHSPV--RCCPGGPWYQVLLRVCSVVLALYTIVSPIVVYISESAVLFRSKSSGAADYILAVLDLIVVIPALPFVGSFVYRIIPVMW 1792
            R T+   R+ ++++    LL+L+   L+  +    +G  F+ L E +      MKFVGLLFAL +A+GA+  G    G  G P+ MVW A     D  M    + GF         S    NF  D  +   G M L+   V F  +       H Q L    +  S     C         +L +  +++ L  +++P+ +   ES +LF S +    D +LA++D+ +   A+PFV SF+   +P MW
Sbjct:   24 RGTKDFQRRAVISN----LLTLVEFVLSLVNAVKRDGFQFATLTEFVFVTSAAMKFVGLLFALVLAVGAYMAGRYRFGNGGSPLAMVWMAKRKNDDFLMRTAVITGFGAQALAVWASAVAYNFASDAGIPAGGGMFLAS--VFFLRMIIYACHRHGQLLPRPTSDPSATTDECS--------ILALGHLIVLLVALIAPLAIEAIESVLLF-SMTESPEDIVLAIIDVGLSFGAIPFVCSFLGNELPEMW 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJ87_9PHAE1.480e-728.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:89962..91768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1808
Cds size918
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.2052672-UTR-P-fluviatile_contig15:89961..908501622815641.2052672-UTR-P-fluviatile_contig15:89961..90850Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 89962..90850 +
1693562648.0355773-UTR-P-fluviatile_contig15:89961..908501693562648.0355773-UTR-P-fluviatile_contig15:89961..90850Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 89962..90850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.2240026-CDS-P-fluviatile_contig15:90850..917681622815641.2240026-CDS-P-fluviatile_contig15:90850..91768Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 90851..91768 +
1693562648.0450711-CDS-P-fluviatile_contig15:90850..917681693562648.0450711-CDS-P-fluviatile_contig15:90850..91768Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 90851..91768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2356.1prot_P-fluviatile_contig15.2356.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 90851..91768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2356.1

>prot_P-fluviatile_contig15.2356.1 ID=prot_P-fluviatile_contig15.2356.1|Name=mRNA_P-fluviatile_contig15.2356.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=306bp
MVLARWEGNKDGWNLDSTLTLFYRARSIFLIAGTDNKKRAEGKGPPEMST
ADEERVALNVDNGRDTRAIFRQRMVAHAQAVLLSLLGVALTFTSWHDHEG
PFSLVERLGRQCVGMKFVGLLFALFVALGAFRKGGVDNGCAGPPILMVWG
ATAAGLDPSMFCLALCGFSIISPKPVNFDGFLAMTGQMMLSMPVVMFFLV
FTIPTALHSQKLLSDAAQHSPVRCCPGGPWYQVLLRVCSVVLALYTIVSP
IVVYISESAVLFRSKSSGAADYILAVLDLIVVIPALPFVGSFVYRIIPVM
WGGDLT
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mRNA from alignment at P-fluviatile_contig15:89962..91768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2356.1 ID=mRNA_P-fluviatile_contig15.2356.1|Name=mRNA_P-fluviatile_contig15.2356.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1807bp|location=Sequence derived from alignment at P-fluviatile_contig15:89962..91768+ (Porterinema fluviatile SAG_2381)
CTCCGCACGAAATGGGTGAAGAAAGCCCGGCCTGGCCATATCTGCGGCGG
GAAATGTTGGGGGCGGCGGGGTGGTAGTAGATTTTTTCTTGCGCAATTGC
ATATAGAAAAAACAAACACCTTCAAGTTCTGGTGGCAGACGGCGTTCCCG
ACCGGTTGTCCGGGAGCGGGGAGCGACGCCACCTGCCTGTAGGACCTACA
AAATACACTAAGAGCACATTCAAAGCCCCTAGGCATTGCACGCTTCTGAC
TGCTGGCCTCCGCGGGAGCCTCTCTTCCATGCTGCCCGCCGCCCAACCCC
ACCTCAAGCCCCACCCTCGCCCCTTCCGACTTTGGGTGGGGCGCCACCGG
TGCTCTGCCCCTCGATTTTCACTGAGCCTCCTCCGGTCACAGCCCCACCT
GCAATTATCCATCGCAAAAAAACACACCCTCAAAAGTCCGGTAGGAGACT
GCGTTTCCGACCTCTCATCTGGGAGCGGGGAGCGAGGCCAGCTGCCTGCA
GGAAAAACAAAATACACAGTATTTATCGAGACAAAAACACATCTTCAAAA
GCCCCCCGGTAGACCACGCTTCTGGCGACGGGTCTCCACGAAAAATATTT
GACATGTTTGGTGGGATCAGCAGTGGAGGGGCGAGGTTCTCGCCCACATG
TAGGCTACTGCGAGTTACTCAGCCTCCACCTCTCGTTGCAACCAAACTTT
CAAGGCAATGTCTCCATCCTACGAAGGGATTTTAGGGCAAAATGATAGAA
AGTTTTCGTCGTAAAAAGCTTGAGCGCACGAACCGCTTCATCGGAAGTTT
TGAAGGTTGCCGTCACAATGAAGCTCGACCGTGTTTACTACCCCGCGAGA
GTTTTCGAGTGTGCCATGTGAGTAGATGTGACCGCGAATATGGTCCTAGC
TCGATGGGAGGGAAACAAGGACGGCTGGAACCTAGACTCAACGCTAACTC
TCTTCTACCGCGCGCGTTCAATCTTCCTCATTGCAGGGACGGATAATAAA
AAACGGGCTGAAGGCAAGGGGCCGCCCGAGATGAGTACTGCGGATGAAGA
GCGTGTGGCTTTGAATGTCGACAACGGGCGCGACACCCGTGCAATTTTCC
GTCAGAGGATGGTTGCGCATGCGCAGGCAGTCCTGCTCAGTCTTCTCGGG
GTCGCCCTGACCTTCACCTCTTGGCACGACCACGAAGGGCCTTTTTCGCT
CGTGGAACGACTCGGCCGTCAGTGCGTTGGAATGAAGTTTGTTGGCCTTC
TGTTTGCGCTCTTCGTTGCCCTGGGGGCATTCAGGAAAGGTGGGGTCGAC
AACGGGTGCGCAGGCCCCCCCATCCTCATGGTGTGGGGAGCGACTGCTGC
TGGATTGGATCCTAGCATGTTTTGCCTAGCACTATGCGGGTTTTCAATTA
TAAGTCCGAAACCAGTAAACTTTGATGGTTTTCTAGCTATGACTGGTCAA
ATGATGTTGTCTATGCCTGTTGTTATGTTCTTTTTGGTTTTCACCATCCC
CACCGCCCTTCACTCACAAAAGCTGTTGAGCGATGCGGCGCAGCACAGCC
CCGTCCGATGCTGCCCAGGTGGGCCGTGGTACCAAGTCCTGCTTAGGGTC
TGTTCTGTTGTATTGGCCCTTTATACGATCGTGTCGCCGATCGTGGTTTA
CATTTCCGAGAGCGCCGTGCTATTTCGCAGCAAGTCTTCTGGGGCTGCCG
ATTACATTCTGGCAGTGCTCGATCTTATCGTGGTGATCCCCGCTTTGCCG
TTTGTGGGCTCTTTTGTCTATCGCATCATTCCTGTAATGTGGGGAGGGGA
TTTGACG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:89962..91768+

>mRNA_P-fluviatile_contig15.2356.1 ID=mRNA_P-fluviatile_contig15.2356.1|Name=mRNA_P-fluviatile_contig15.2356.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1836bp|location=Sequence derived from alignment at P-fluviatile_contig15:89962..91768+ (Porterinema fluviatile SAG_2381)
ATGGTCCTAGCTCGATGGGAGGGAAACAAGGACGGCTGGAACCTAGACTC
AACGCTAACTCTCTTCTACCGCGCGCGTTCAATCTTCCTCATTGCAGGGA
CGGATAATAAAAAACGGGCTGAAGGCAAGGGGCCGCCCGAGATGAGTACT
GCGGATGAAGAGCGTGTGGCTTTGAATGTCGACAACGGGCGCGACACCCG
TGCAATTTTCCGTCAGAGGATGGTTGCGCATGCGCAGGCAGTCCTGCTCA
GTCTTCTCGGGGTCGCCCTGACCTTCACCTCTTGGCACGACCACGAAGGG
CCTTTTTCGCTCGTGGAACGACTCGGCCGTCAGTGCGTTGGAATGAAGTT
TGTTGGCCTTCTGTTTGCGCTCTTCGTTGCCCTGGGGGCATTCAGGAAAG
GTGGGGTCGACAACGGGTGCGCAGGCCCCCCCATCCTCATGGTGTGGGGA
GCGACTGCTGCTGGATTGGATCCTAGCATGTTTTGCCTAGCACTATGCGG
GTTTTCAATTATAAGTCCGAAACCAGTAAACTTTGATGGTTTTCTAGCTA
TGACTGGTCAAATGATGTTGTCTATGCCTGTTGTTATGTTCTTTTTGGTT
TTCACCATCCCCACCGCCCTTCACTCACAAAAGCTGTTGAGCGATGCGGC
GCAGCACAGCCCCGTCCGATGCTGCCCAGGTGGGCCGTGGTACCAAGTCC
TGCTTAGGGTCTGTTCTGTTGTATTGGCCCTTTATACGATCGTGTCGCCG
ATCGTGGTTTACATTTCCGAGAGCGCCGTGCTATTTCGCAGCAAGTCTTC
TGGGGCTGCCGATTACATTCTGGCAGTGCTCGATCTTATCGTGGTGATCC
CCGCTTTGCCGTTTGTGGGCTCTTTTGTCTATCGCATCATTCCTGTAATG
TGGGGAGGGGATTTGACGATGGTCCTAGCTCGATGGGAGGGAAACAAGGA
CGGCTGGAACCTAGACTCAACGCTAACTCTCTTCTACCGCGCGCGTTCAA
TCTTCCTCATTGCAGGGACGGATAATAAAAAACGGGCTGAAGGCAAGGGG
CCGCCCGAGATGAGTACTGCGGATGAAGAGCGTGTGGCTTTGAATGTCGA
CAACGGGCGCGACACCCGTGCAATTTTCCGTCAGAGGATGGTTGCGCATG
CGCAGGCAGTCCTGCTCAGTCTTCTCGGGGTCGCCCTGACCTTCACCTCT
TGGCACGACCACGAAGGGCCTTTTTCGCTCGTGGAACGACTCGGCCGTCA
GTGCGTTGGAATGAAGTTTGTTGGCCTTCTGTTTGCGCTCTTCGTTGCCC
TGGGGGCATTCAGGAAAGGTGGGGTCGACAACGGGTGCGCAGGCCCCCCC
ATCCTCATGGTGTGGGGAGCGACTGCTGCTGGATTGGATCCTAGCATGTT
TTGCCTAGCACTATGCGGGTTTTCAATTATAAGTCCGAAACCAGTAAACT
TTGATGGTTTTCTAGCTATGACTGGTCAAATGATGTTGTCTATGCCTGTT
GTTATGTTCTTTTTGGTTTTCACCATCCCCACCGCCCTTCACTCACAAAA
GCTGTTGAGCGATGCGGCGCAGCACAGCCCCGTCCGATGCTGCCCAGGTG
GGCCGTGGTACCAAGTCCTGCTTAGGGTCTGTTCTGTTGTATTGGCCCTT
TATACGATCGTGTCGCCGATCGTGGTTTACATTTCCGAGAGCGCCGTGCT
ATTTCGCAGCAAGTCTTCTGGGGCTGCCGATTACATTCTGGCAGTGCTCG
ATCTTATCGTGGTGATCCCCGCTTTGCCGTTTGTGGGCTCTTTTGTCTAT
CGCATCATTCCTGTAATGTGGGGAGGGGATTTGACG
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