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Homology
BLAST of mRNA_P-fluviatile_contig1.144.1 vs. uniprot
Match: D7G9E7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E7_ECTSI) HSP 1 Score: 280 bits (717), Expect = 6.690e-90 Identity = 146/174 (83.91%), Postives = 160/174 (91.95%), Query Frame = 2
Query: 128 MAGVVRTSPHLPSVTAVSVDTLFLVVMVCLLVEVVAGFVVWRTSRVTRTEAAMVLQRQTLRAGVAKTNFISTFVENSKLKRLLLKVEKDLERTQAVRERRHKSAAKAVRAVRMCVYGSMVMLMWGRPLISFSPDYLWPSCFSHAVSGGRAAGSVGALSIVAMFVFGLVPRFSPS 649
MAG+V SPHLPSV AVSVDTLFLVVM+C LVEVVAGFV+W+TSRVTRTEAA++ QRQTLR GVAKTN+ +TFVENSKLKRLLLK EKDLER Q+ R+RR KS AKAVRAVR+CVYGSMV+LMWGRPLISFSPDYLWPS FSHA+SGGRAAGSVGALSIVAMF+FGLVPR SPS
Sbjct: 1 MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVPRLSPS 174
BLAST of mRNA_P-fluviatile_contig1.144.1 vs. uniprot
Match: A0A835YKR9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR9_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 3.890e-19 Identity = 62/171 (36.26%), Postives = 93/171 (54.39%), Query Frame = 2
Query: 149 SPHLPSVTAVSVDTLFLVVMVCLLVEVVAGFVVWRTSRVTRTEAAMVLQRQTLRAGVAKTNFISTFVENSKLKRLLLKVEKDLERTQAVRERRHKSAAKAVRAVRMCVYGSMVMLMWGRPLISFSPDYLWPSCFSHAVSGGRAAGS----VGALSIVAMFVFGLVPRFSPS 649
S LP+V A++ L L ++VC++VE+++G R T+ E L+ + KTN+ FVENSKL+R L+KVEK+LER + R R + R +R+ YG++V WG+ I F+P Y+ P AV+GG G+ V +V +F +GL RF S
Sbjct: 4 SAALPAVLAINPVGLILAILVCVIVELISGIAHAMAGRRTQAEVTYSEDVALLKVEIVKTNYPEKFVENSKLQRQLIKVEKELERLRGERAARRTKVQRWTRWLRLAAYGALVAAHWGQTAIRFTPAYVTPL---GAVAGGPLQGTPQGGVSIAGVVVLFWWGLGGRFGSS 171
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-28_000670.1 |
| Exons | 4 |
| Model size | 1435 |
| Cds size | 525 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815295.7032104-UTR-P-fluviatile_contig1:1910959..1911086 | 1622815295.7032104-UTR-P-fluviatile_contig1:1910959..1911086 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 1910960..1911086 + |
| 1693561434.2155902-UTR-P-fluviatile_contig1:1910959..1911086 | 1693561434.2155902-UTR-P-fluviatile_contig1:1910959..1911086 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 1910960..1911086 + |
| 1622815295.7596471-UTR-P-fluviatile_contig1:1915912..1916695 | 1622815295.7596471-UTR-P-fluviatile_contig1:1915912..1916695 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 1915913..1916695 + |
| 1693561434.2699103-UTR-P-fluviatile_contig1:1915912..1916695 | 1693561434.2699103-UTR-P-fluviatile_contig1:1915912..1916695 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig1 1915913..1916695 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815295.7170517-CDS-P-fluviatile_contig1:1911086..1911185 | 1622815295.7170517-CDS-P-fluviatile_contig1:1911086..1911185 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 1911087..1911185 + |
| 1693561434.2251697-CDS-P-fluviatile_contig1:1911086..1911185 | 1693561434.2251697-CDS-P-fluviatile_contig1:1911086..1911185 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 1911087..1911185 + |
| 1622815295.7271821-CDS-P-fluviatile_contig1:1914650..1914749 | 1622815295.7271821-CDS-P-fluviatile_contig1:1914650..1914749 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 1914651..1914749 + |
| 1693561434.2348561-CDS-P-fluviatile_contig1:1914650..1914749 | 1693561434.2348561-CDS-P-fluviatile_contig1:1914650..1914749 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 1914651..1914749 + |
| 1622815295.736599-CDS-P-fluviatile_contig1:1915084..1915222 | 1622815295.736599-CDS-P-fluviatile_contig1:1915084..1915222 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 1915085..1915222 + |
| 1693561434.244136-CDS-P-fluviatile_contig1:1915084..1915222 | 1693561434.244136-CDS-P-fluviatile_contig1:1915084..1915222 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 1915085..1915222 + |
| 1622815295.7482302-CDS-P-fluviatile_contig1:1915723..1915912 | 1622815295.7482302-CDS-P-fluviatile_contig1:1915723..1915912 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 1915724..1915912 + |
| 1693561434.2538378-CDS-P-fluviatile_contig1:1915723..1915912 | 1693561434.2538378-CDS-P-fluviatile_contig1:1915723..1915912 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig1 1915724..1915912 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig1.144.1 >prot_P-fluviatile_contig1.144.1 ID=prot_P-fluviatile_contig1.144.1|Name=mRNA_P-fluviatile_contig1.144.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=175bp
MAGVVRTSPHLPSVTAVSVDTLFLVVMVCLLVEVVAGFVVWRTSRVTRTE AAMVLQRQTLRAGVAKTNFISTFVENSKLKRLLLKVEKDLERTQAVRERR HKSAAKAVRAVRMCVYGSMVMLMWGRPLISFSPDYLWPSCFSHAVSGGRA AGSVGALSIVAMFVFGLVPRFSPS* back to topmRNA from alignment at P-fluviatile_contig1:1910960..1916695+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig1.144.1 ID=mRNA_P-fluviatile_contig1.144.1|Name=mRNA_P-fluviatile_contig1.144.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5736bp|location=Sequence derived from alignment at P-fluviatile_contig1:1910960..1916695+ (Porterinema fluviatile SAG_2381) CTTCGGCCGAGCGTGGTGCAAGGAGGGGAGCCAGCGAGACAAAGAGAGCA
ACGGGAAGTGAGGCAAGGAGGGACGGGCGGAGAGGGAGAGCGAGCGGCGG
GCAGCAAGCGGAGAGGCGGGCTGACAAATGGCAGGCGTCGTGCGCACGTC
GCCTCACTTGCCGTCGGTGACGGCCGTGAGTGTCGACACACTCTTCTTGG
TCGTGATGGTATGCTTACTCGTGGAGGTGAGCGAAGCTGGGGGCGCGGCA
CGCGCGCGTTCTGCTCAAGTCGAGTCAAGTTCTGACCAGCGGAAGGGCGG
CTCTTGGTTCAGAAACCTGTGCTGCTGCAGCAGCAGCAGCAGTTTGCAAA
ACCTTATCTGTAAAGAAGACCTGTCGAGGCTGCGTGAGTCCAGTATGGCG
GCGAGACACAACCTTGGCTTTTACGACTGAGTCTTTCGCCGCGGGTGGGA
AACAAATGGTTTCGTGTCTGATGTCCATCACATACCAAAGTGAGAGCACT
CGTTTCAGCAACAATGGCGCCGGGAGCAAGCCCTAGTCAGCGCCCCCCGT
TCACTTATACCGCGCAGCTGGCTCGGTGCTCTTTCCTGGCGACACTCATG
GGCCGTGCATCGTCTGTTGTTGCAACATGTCGGCCGAAGAAGGCCTCCGA
TGGGCCCGCCGAAGCCTACGTTTCATGTCAGCTTTGTGGGTGCCAGGGTT
GCATCCCAGCTTGCATAATGGACGGGCCCCGGGTAGTTGGGGGCCCGGGT
TCTATCGGGGACAACTCAAATACCCGACTTGGGACAGCCCAATTTCCCCA
CAGACCGGTTTGGTACCCGAGCCAGAATATGGGAGCCGGGATGCAACCCT
TGTGGGCGCTGGGAAGTTGCATTCACTCAATTTAGTCCTCGGCACACGCC
TGCATTTATGGAGGTTTGACCTGAATCCCGGCTTGTTGCCGCCTGTCATT
CTGCAACAAATACAGCACTTGCTGCTTATGCAACGTAGTCACTACAGCAG
CCGATGACACACTCGACGCAAGCAGTGAGGCGCGAACACTCCGGAATCGT
TCCTTGGGCAACTTCAGCGGGAAAATCTCATTGTTGTGCCTGGACACACT
AATACACAAGGAAGTCCAAGGCAGCTTCTATTGTGGTGGGTTTAGACACC
GACTGATTGGGTTTTTACTTCAAAGCGATGGTAGAACAGAAGACGACGTA
AAAATACAGCAGAGTGAACACCGCCACGGCGGCTTAGCGCCATGGTTGCA
TCTTCTAAATTGAGTTCTCGCCGGAAACCTCGCTCTTTCTTTCTGTTTTG
TCTCAGCCAACAAGTAAGAATACTCCGTATTTAACAACAATAATGTGCGT
ACACACCTCGAAATCAAAATCGAAGATGCACATGGTTGGTGACCTCCTTG
TTTCGGCGTTTGGGGGTGATGGTGCGTCCGTACCTCGCGGGCGAACTAGT
GAGAGCTGTTGATGGCTCATCAGCAGCAGATCATGTCTCGAAGATCATCG
CACAGGTATATTAATATTGGCGTGCTAAAATCGGAAAGCCATATCGCCAT
GAATTTGTGCCGCGAATGTGCAGGCGCACCTGGAACAGATATGTCCGCGT
TTAGTGTTTTGGAAGTGCAAAAGGAGAAAATAAATGCTGGGCGCTGCATG
GAACACCTTACCAAAATCCCGTGAATTTGCTCCGAACATTGTCGAGTAGA
AGCACCTTGGTAGCCAGGACAAAGCGGGTTCTAGCTTGTTGAGTGCGAAG
CATAAAGGCAGCTTCCCTTTCCTTGATATTGCACGGGCTAGTTTCTGATC
CGCACTTACCAGCGACGTCCAAGAGACCAGGCTTAGCAAACACTAGCGCC
CTTCGGAAAGTTGTCAGTAGTCCGTTGTCCCTTTACCTCATGCGTTTCTT
GTCGGTCGAGGTCTCGTCGCGCATTCGCGTTCTTCTTAGTTTTGTTGGCT
TCGGACGTATGATTCTCCGCGCGACGGCCGCATCAAAGGTACGGCTACCG
CGGGAGGTTTTAAGCCTGTCATGGGAGGGCCCCAACCATCCACGGTATAC
CTCGACAAAATAACTTTACTACATGATGACGCGATGGCTCGGGTATGGGG
TCTCCTTTTGTCAGTATCAAGACTTTAGATAGCACCATCCATCTGTACAA
GCGGCGAATGCCGCACTTTCGCCCCAGGTGCCGACAGACGAGCCTTACGG
CTGCCATTTTATTCGGCCAGCGGAACGCTGGTTAATCACGCCGTCTCTGT
TGCAAAAATACTTGTGTACGAGAAGTGTTCGACCGTAAGTGCTTGTTGCC
TCATCCGTGTGCGGTTGACTAATTCCATAATTTGGTTCTCCTTACTTTAT
GCGCACCCCCGTGCTAAGTCAGGATACCTTGTGATAACAAGAACCCCCGT
GCGAAAATGGACTTCAGCTGCTGACGCCTAGTTTTCAAACCACTGTGAAA
GCAAGGACCGCTTGCGTCCACTGGTGCTGCACAGACCTCCGCCTGCACTT
CTAATACCAGTGATTGTCTGCCACGAAACTCATAACACACGGACAGATAG
AGACACCTGAAGTTCATCAGAGCACTGCATCACCGTATCACGAACACAGA
AACGCGGTGCGACAAAGAGGAGGCGGCGAAATGCAAAAGTGTTTTTTTCT
CTCTCTCTCTTTTGTGTGGGAGGGTAGAAATCGGATACGATACGAATCAG
CGGCGTCCGTGCCGTGCTGTCTCTTGCAAGAAACCTTATTATGTCCTGCA
GGCGTTGTGATGGGATGTGTGATGCCGTTGCCTTGTGGGTGGGAGTCGAT
ATCCCTACCGCCAACATCTTCGTTACTTTTTTTTTTGCCTATGGGAAATT
CAGTCAGTCTCGTATCGTTTAAAGTTTGCATAGGATTCCGGAGGAAATGG
CACGGATTCAAACACGAGATACCGGCACGATGTGTCTTAAAGCCAACGTC
TCAGGCATGGCCGGCCTCGCGGCGGCAGAGCAATCTTGCGAAATCAATGG
GAATCATGCCGAATCGTACCACCCCCGGGAGATATCAACCCCGCGCGAAA
ATAGAATCAAATCATTTGGTTCTTAGTTTTCATTGGCACCCTGTACCAAA
TCAACGCACCGTGCCAAATCAAGCACTCTTGCGGTATCCTACTGCGGTGT
TGGCTCACGCATGCCGCCTCGCGAAGGTGCTCGCGAGCTGAAACCGTCGG
AACCTCGCCTGCATGCGCACCAAACGTGGAAATTATGAATTGTTAGGTGG
TTGTCTACATGACCTCGCAGCCACGGCGGCAATGGCGTAGACGTGCTCAA
TGAAGATCGACTGCAGTTTTGATGCAGAATGGTCAGGTTTTTACCAACGC
TCGCCGCGCGACAAAGACCTGACCAAAGATCGGTGGATATCTGGGTGGTT
CCTGGCTGGGATGAGTTTATGTCGCACGAACACTGGTGTGTCGAGGGCCG
ACACATGCGCCTTTTTGCGCTCGTCGAGCGGGGCCGGGAAGCAGGTGGTA
TTGTCCGCTGCAACGTCTGCAACGTCTGCAACGTCTATTTTTCTCTCTCT
CAGCTGAGAATGCATCTCCTCTCGGGGCGTTGCAGCCCACCAATGTGCTG
TTGAACAAGTTTGCGCCATGCATGCAGAAGTTGGTGCGAAAGCGATGGTG
TGCTGTGTTGACATTCTGGATGCTGCTCGGCTGCTTTCCAGGTTGTCGCT
GGGTTCGTGGTGTGGAGGACTTCCAGGGTGACCCGGACGGAAGCAGCTAT
GGTACTGCAACGCCAAACCTTGAGGGCAGGGGTCGCCAAGGTGAGTGGAT
TAAAGGTCTTGTGTGCCTTGTCACCGTTCATTTCAGATTGTGGCAGGGTA
CGTCATCAACATTGAACGGTCCTCGCTATGTGATGCTGATGCCAATCAGC
AGCCGCTGCTTCAACCTCTTCGAGATGCCGTTTACTGCTACCTGCCGATC
CAGCGCTGAGCTGCACGCACCCAGCCCTACGAACCACCACGTGCCCTCGA
ACTCCTTGGCGCCCCAGCTTCCTCTTCCTCCTGTCGCCCGAAATAATGGT
AGCCCTAAACCACCTCTCCGCGTGCGATTGACACCGGCGTGACAAAGCTT
TTGCTTGCCACTTCTACACCGGCAGACCAACTTCATTTCGACGTTCGTGG
AGAACTCAAAGCTGAAACGACTCTTGCTCAAGGTGGAGAAGGATCTCGAA
AGGACGCAGGCCGTCAGGGAGAGACGGCACAAGTCCGCGGCAAAGGCGGT
CCGTGCCGTCCGGGTGAGCTCCATTTCGATGTTTTCGTTGTGTCGTTAAG
CTTTGCTTACCATTGAGTTTACGCCACAGCCATCTCCGCCTTGAGGGCGC
AACGGGTTTTTTGTTGAATTGTCAAGCTCCCTCAACGCCTGATAAGGGAC
GCCGGTGGCTTTTATGATTCAGTGGAACGTACAGCATGACCCCTGCTTCA
AAAGATCGAGGTGTCCTTACAGCGCGGAGTGTCCTATTGGTGTTATTGAA
CCGAGGACATCTGTACTCCAATGATGCAGGAGTTGCGGTATCCCGAAATC
TCCTCACGTCTTGGCAAGGGGGTCGATTGGTGTCATTGTAGAGATTTCTT
TCCTCGCCGCCGAGATTGAACGATATTGTCGATGGCTCGCTTTATCGCCG
TGCTCCCGAATGCGTTCGTGTCTTTTTGAAAAAGGTGCATGCCGCAATGT
AGGTCGCCATTGTCGAACCCATTTGCTGCCTGCGCCTCTATGCCTTTGCC
ACCCCCCCCGGCAGATGTGCGTGTACGGCTCGATGGTGATGCTCATGTGG
GGACGGCCGTTGATATCTTTCTCGCCGGACTACCTGTGGCCGTCGTGCTT
CTCGCACGCCGTCTCCGGGGGCAGGGCGGCCGGAAGCGTGGGGGCGCTTT
CCATAGTGGCGATGTTTGTGTTCGGGTTGGTTCCGCGGTTTTCGCCGTCG
TGATGACAGTGATGAAAAAAATGCTTGTGTTTGTGTGGCGAATACAAAGG
AAATGTGCCACGAAGCCGTTGCGGTAGCTTCCAGGAGTTGAGCCGCATGG
CACTGATCCAGAATTGCTGCTTTTGCCCGCACTACGGTGTGCCTAGTTTA
GATTCAGGACCCCCACTGACCTTCACGCGAAGCGTCTGTCGGTGTGATAA
CACTCACCTGTTCATGGCGCCTGTTGATGGTAACATCAACGTTATCACGC
ATTTGAGATGAGCCGGTTCCTGATCCAGGACAACATGCAATCCCACGTCC
GCCAAGCGCCCTTGGTAGTAATTGAAAATACTGCTAAGGCAAAGTAAGCA
CTAGCTTGCGAAGGGTACAAGGTTTCTTAAGTTTGGGTGCGATCTGCGTG
ACGGATATGTTTCGCGGAAAGCATCGATTGTTCTCGCGATTTGCATTCAA
CAATCCGCGCGTCAAAAAAAACATGTCTTTTGCCCGAGAAATGACAAGGC
TCAGTTGTTTGCAAGAGTGAGGAATATGCCGTTTCAGCTGAGCGGCAAAC
GCTACATTAATGCTGGGTAGTTGCCCATGCTCAGAGGTCGGTGTACTAGG
CCACAATGTTTTAATCTCATTCGAAACACGGGTGTTTTTCGTGCTAGCTA
GCGGGCAGTAAGACCGAGTGAGAGCTGTTCGTATTTATCACAGACGTTCC
TACGCATAATTGACTATGCCTGCAGATAATTTGGAAGCAGCGCGGCGCTG
TGACATTCCAACATATTGTGTACACACACGGCGGTG back to topCoding sequence (CDS) from alignment at P-fluviatile_contig1:1910960..1916695+ >mRNA_P-fluviatile_contig1.144.1 ID=mRNA_P-fluviatile_contig1.144.1|Name=mRNA_P-fluviatile_contig1.144.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1050bp|location=Sequence derived from alignment at P-fluviatile_contig1:1910960..1916695+ (Porterinema fluviatile SAG_2381) ATGGCAGGCGTCGTGCGCACGTCGCCTCACTTGCCGTCGGTGACGGCCGT GAGTGTCGACACACTCTTCTTGGTCGTGATGGTATGCTTACTCGTGGAGA TGGCAGGCGTCGTGCGCACGTCGCCTCACTTGCCGTCGGTGACGGCCGTG AGTGTCGACACACTCTTCTTGGTCGTGATGGTATGCTTACTCGTGGAGGT TGTCGCTGGGTTCGTGGTGTGGAGGACTTCCAGGGTGACCCGGACGGAAG CAGCTATGGTACTGCAACGCCAAACCTTGAGGGCAGGGGTCGCCAAGGTT GTCGCTGGGTTCGTGGTGTGGAGGACTTCCAGGGTGACCCGGACGGAAGC AGCTATGGTACTGCAACGCCAAACCTTGAGGGCAGGGGTCGCCAAGACCA ACTTCATTTCGACGTTCGTGGAGAACTCAAAGCTGAAACGACTCTTGCTC AAGGTGGAGAAGGATCTCGAAAGGACGCAGGCCGTCAGGGAGAGACGGCA CAAGTCCGCGGCAAAGGCGGTCCGTGCCGTCCGGACCAACTTCATTTCGA CGTTCGTGGAGAACTCAAAGCTGAAACGACTCTTGCTCAAGGTGGAGAAG GATCTCGAAAGGACGCAGGCCGTCAGGGAGAGACGGCACAAGTCCGCGGC AAAGGCGGTCCGTGCCGTCCGGATGTGCGTGTACGGCTCGATGGTGATGC TCATGTGGGGACGGCCGTTGATATCTTTCTCGCCGGACTACCTGTGGCCG TCGTGCTTCTCGCACGCCGTCTCCGGGGGCAGGGCGGCCGGAAGCGTGGG GGCGCTTTCCATAGTGGCGATGTTTGTGTTCGGGTTGGTTCCGCGGTTTT CGCCGTCGTGAATGTGCGTGTACGGCTCGATGGTGATGCTCATGTGGGGA CGGCCGTTGATATCTTTCTCGCCGGACTACCTGTGGCCGTCGTGCTTCTC GCACGCCGTCTCCGGGGGCAGGGCGGCCGGAAGCGTGGGGGCGCTTTCCA TAGTGGCGATGTTTGTGTTCGGGTTGGTTCCGCGGTTTTCGCCGTCGTGA back to top
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