mRNA_P-fluviatile_contig14.2342.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2342.1
Unique NamemRNA_P-fluviatile_contig14.2342.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: D8LF88_ECTSI (WD repeat-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF88_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.390e-36
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 3 
Query:  129 MSNLSYRQPKAEIEPTDILVRTVYAHEGYVSSVTFFGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHTDGVTFAMAGPDGR 377
            MSNLSY QPK E++PT +L RT+YAH  YVSSV FFG   D++LTGSYDETAKLWDLK G  ++KFQGHTDG+TF M GPDGR
Sbjct:    1 MSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGR 83
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.310e-33
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 3 
Query:  129 MSNLSYRQPKAEIEPTDILVRTVYAHEGYVSSVTFFGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHTDGVTFAMAGPDGR 377
            MSNLSY QPK E++PT +L RT+YAH  YVSSV FFG   D++LTGSYDETAKLWDLK G  ++KFQGHTDG+TF M GPDGR
Sbjct:   51 MSNLSYHQPKVELKPTRLLARTIYAHHSYVSSVAFFGSQCDRLLTGSYDETAKLWDLKTGLALQKFQGHTDGITFVMPGPDGR 133
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: A0A7V3PQN2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3PQN2_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.130e-8
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 3 
Query:  123 GKMSNLSYRQPKAEIEPTDILVRTVYAHEGYVSSVTFFGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHTDGV 347
            G++   +      +  P  ++V+T   H   V+SV F  PD   VLTGS D+TA+LWD   G +IR+F+GHT GV
Sbjct:   26 GRLDGSAMAMLNQQPPPVALVVQT--GHTDTVTSVAF-SPDGRYVLTGSQDDTARLWDASAGEEIRRFEGHTSGV 97
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: K9R6J1_9CYAN (WD40 repeat-containing protein n=1 Tax=Rivularia sp. PCC 7116 TaxID=373994 RepID=K9R6J1_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 2.090e-7
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 3 
Query:  234 FGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHTDGVTFAMAGPDGR 377
            F PD   +++GSYD T K+WDLKNG  IR   GH DGV   +  PDG+
Sbjct:   66 FTPDGQTLVSGSYDHTVKVWDLKNGKLIRTLDGHKDGVNDVLISPDGK 113
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: UPI001B88401B (WD40-repeat-containing domain protein n=1 Tax=Suillus bovinus TaxID=48563 RepID=UPI001B88401B)

HSP 1 Score: 59.3 bits (142), Expect = 4.870e-7
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 3 
Query:  126 KMSNLSYRQPKAEIEPTDILVRTVYAHEGYVSSVTFFGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHTDGVTFAMAGPDGRI 380
            KMSNL          P+ I  RT   HE  V +V  F PD  +++TGS D T +LWDLK G  ++K +GH+ GV       DG+I
Sbjct:   86 KMSNLI---------PSTIPPRTFEDHEATVQAVAVF-PDKRRMVTGSEDNTLRLWDLKTGAVLKKMKGHSGGVWALTVSRDGQI 160
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: UPI001B882EA7 (WD40-repeat-containing domain protein n=1 Tax=Suillus fuscotomentosus TaxID=1912939 RepID=UPI001B882EA7)

HSP 1 Score: 53.9 bits (128), Expect = 7.710e-6
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 3 
Query:  159 AEIEPTDILVRTVYAHEGYVSSVTFFGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHTDGVTFAMAGPDGRI 380
            +E+      +R    HEG++++V  F PD  +++TGSYD T  LWDLK G  ++K  GH + V       DG++
Sbjct:    2 SELSTITTPLRWFEGHEGHINAVAVF-PDKYRMVTGSYDTTLHLWDLKTGVVLKKMVGHRNPVWRLAISRDGQL 74
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: A0A7V3X343_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3X343_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.380e-5
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:  195 VYAHEGYVSSVTFFGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHT 338
            V    GYV+SV F  P+  QVLTGS+D TA++WD   G ++R+F+GHT
Sbjct:  603 VTTSSGYVTSVAF-SPNGRQVLTGSWDGTARVWDAATGKELRQFEGHT 649
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: A0A2N2GF15_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-6 TaxID=2013756 RepID=A0A2N2GF15_9DELT)

HSP 1 Score: 55.1 bits (131), Expect = 1.380e-5
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 3 
Query:  234 FGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHTDGVT 350
            + PD   V++GS+D TA+LWD+ +G +IRKF+GHT G+T
Sbjct:   59 YSPDGKSVVSGSWDNTARLWDVISGKEIRKFKGHTGGIT 97
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: A0A286RFI6_9BACT (Non-specific serine/threonine protein kinase n=2 Tax=Thermogutta terrifontis TaxID=1331910 RepID=A0A286RFI6_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.430e-5
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:  195 VYAHEGYVSSVTFFGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHT 338
            V    GYV+SV F  P+  QVLTGS+D TA++WD   G ++R+F+GHT
Sbjct:  583 VTTSSGYVTSVAF-SPNGRQVLTGSWDGTARVWDAATGKELRQFEGHT 629
[Close]
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Match: A0A8E6B3W5_9BACT (ANAPC4_WD40 domain-containing protein n=1 Tax=Telmatocola sphagniphila TaxID=1123043 RepID=A0A8E6B3W5_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.720e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 3 
Query:  204 HEGYVSSVTFFGPDYDQVLTGSYDETAKLWDLKNGHQIRKFQGHTDGVTFAMAGPDG 374
            H+G VS ++F  PD   +L+GS+D+TAKLWDL +G ++  FQ     ++     PDG
Sbjct:  218 HKGLVSDISF-SPDEQFLLSGSWDQTAKLWDLSSGKEVNNFQWKQGQISRVAIAPDG 273
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LF88_ECTSI2.390e-3671.08WD repeat-containing protein (Partial) (Fragment) ... [more]
A0A6H5L7H8_9PHAE3.310e-3371.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7V3PQN2_9BACT1.130e-841.33Uncharacterized protein (Fragment) n=1 Tax=Armatim... [more]
K9R6J1_9CYAN2.090e-752.08WD40 repeat-containing protein n=1 Tax=Rivularia s... [more]
UPI001B88401B4.870e-741.18WD40-repeat-containing domain protein n=1 Tax=Suil... [more]
UPI001B882EA77.710e-636.49WD40-repeat-containing domain protein n=1 Tax=Suil... [more]
A0A7V3X343_9BACT1.380e-552.08Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2N2GF15_9DELT1.380e-553.85Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A286RFI6_9BACT1.430e-552.08Non-specific serine/threonine protein kinase n=2 T... [more]
A0A8E6B3W5_9BACT1.720e-542.11ANAPC4_WD40 domain-containing protein n=1 Tax=Telm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:3093782..3094940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue4e-29
Seed eggNOG ortholog2880.D8LF88
KEGG koko:K02084
KEGG Pathwayko01524,ko04115,ko04210,ko04214,ko04215,ko05010,ko05012,ko05014,ko05016,ko05134,ko05152,ko05161,ko05200,ko05222,map01524,map04115,map04210,map04214,map04215,map05010,map05012,map05014,map05016,map05134,map05152,map05161,map05200,map05222
KEGG ModuleM00685
EggNOG free text desc.maturation of LSU-rRNA
EggNOG OGsCOG2319@1,KOG0300@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Exons2
Model size548
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2342.1prot_P-fluviatile_contig14.2342.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 3093782..3094812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.219107-CDS-P-fluviatile_contig14:3093781..30940421622815638.219107-CDS-P-fluviatile_contig14:3093781..3094042Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 3093782..3094042 -
1693562637.7353432-CDS-P-fluviatile_contig14:3093781..30940421693562637.7353432-CDS-P-fluviatile_contig14:3093781..3094042Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 3093782..3094042 -
1622815638.2322986-CDS-P-fluviatile_contig14:3094653..30948121622815638.2322986-CDS-P-fluviatile_contig14:3094653..3094812Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 3094654..3094812 -
1693562637.995783-CDS-P-fluviatile_contig14:3094653..30948121693562637.995783-CDS-P-fluviatile_contig14:3094653..3094812Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 3094654..3094812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.244444-UTR-P-fluviatile_contig14:3094812..30949401622815638.244444-UTR-P-fluviatile_contig14:3094812..3094940Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 3094813..3094940 -
1693562638.0077734-UTR-P-fluviatile_contig14:3094812..30949401693562638.0077734-UTR-P-fluviatile_contig14:3094812..3094940Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 3094813..3094940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2342.1

>prot_P-fluviatile_contig14.2342.1 ID=prot_P-fluviatile_contig14.2342.1|Name=mRNA_P-fluviatile_contig14.2342.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=140bp
MSNLSYRQPKAEIEPTDILVRTVYAHEGYVSSVTFFGPDYDQVLTGSYDE
TAKLWDLKNGHQIRKFQGHTDGVTFAMAGPDGRILTASEDRTFRVWDADT
GDCLRVVRSHSGSVTSLCMAGPDRIVSGCSDKKLRVFDIN
back to top

mRNA from alignment at P-fluviatile_contig14:3093782..3094940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2342.1 ID=mRNA_P-fluviatile_contig14.2342.1|Name=mRNA_P-fluviatile_contig14.2342.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1159bp|location=Sequence derived from alignment at P-fluviatile_contig14:3093782..3094940- (Porterinema fluviatile SAG_2381)
CTTGACAACGGACAACGCGAGCAGCACAATCGTAAGAGGGTGCAGGGAAT
ATCCCCGTAAAAAATCAAGAGAAAACACGTAACAGGGGACCACAATACGG
CTAAGGAGTGGAAAGAAACGAGGGCAAAATGTCCAACCTATCCTACCGCC
AACCCAAGGCAGAGATCGAGCCCACCGACATTCTGGTGCGCACGGTCTAC
GCCCACGAGGGCTACGTATCGAGCGTGACTTTCTTTGGGCCTGACTATGA
CCAGGTCCTGACAGGGAGCTACGATGAAACCGCGAAGGTATGCGCAGTTT
GCAGCGTAAAGCATTGTAACATGTGCCCCGCCGTTCTGACCGTTGTTTCA
TTTCTGAATATTCCGGCGTTTCGAAAACAAGGGCCTGACTCCTAACCGCG
CCGTGTATTTGGTGCTGTTGATTTGCCGCCACCGAGCTACAAGCCTCAAT
GCAAGTGTTATGTCTTTTTAGGCTCGTCTGAGCTGTATGGATGCATCGAT
CTCTGGCTTTTGATGTTTTCGGGTCGACCTCCACACAAAACATCCGTGTC
CCTCCTTTTCGCAGTTGCAAAGAGGAGAGCAGCGGATCGCACACCATGGG
TTACGGGTGATAGCGGTCGCCCAAAATCATCCAGCTCGTGCGCTTCACAG
AACAAAACATGCGTGCCTCAATCTTCCACTGGCCCATCCTATTCCAAGGG
GCATTTTCTTTCATGGTAAGTGTCATGCAGTCTCTCACCGCTCTTTGCCG
GTGGATTTCTCACTGCTGTGTTCCCACGGGCTGCTCTGTCCGATCCCCAT
CCCTTCCCAGCCCCCCTCTCCCCTCCCAACGTCAACCAACGTCGCGCGCC
AAAACAAACTAACCCTGGCCCCGGCGCCACCAAACTTCTTCAAAACAGCT
CTGGGATCTCAAGAACGGCCATCAAATCCGCAAGTTTCAGGGCCACACGG
ACGGCGTCACCTTCGCCATGGCGGGCCCCGACGGCCGCATCCTAACTGCC
AGTGAGGACCGGACCTTCCGCGTCTGGGACGCCGACACGGGCGACTGCCT
TCGCGTCGTCCGCTCCCACAGCGGCTCGGTCACCTCCCTCTGCATGGCTG
GCCCGGACCGCATCGTCAGCGGCTGCTCCGACAAGAAGCTCAGGGTGTTC
GACATAAAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:3093782..3094940-

>mRNA_P-fluviatile_contig14.2342.1 ID=mRNA_P-fluviatile_contig14.2342.1|Name=mRNA_P-fluviatile_contig14.2342.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=840bp|location=Sequence derived from alignment at P-fluviatile_contig14:3093782..3094940- (Porterinema fluviatile SAG_2381)
ATGTCCAACCTATCCTACCGCCAACCCAAGGCAGAGATCGAGCCCACCGA
CATTCTGGTGCGCACGGTCTACGCCCACGAGGGCTACGTATCGAGCGTGA
CTTTCTTTGGGCCTGACTATGACCAGGTCCTGACAGGGAGCTACGATGAA
ACCGCGAAGATGTCCAACCTATCCTACCGCCAACCCAAGGCAGAGATCGA
GCCCACCGACATTCTGGTGCGCACGGTCTACGCCCACGAGGGCTACGTAT
CGAGCGTGACTTTCTTTGGGCCTGACTATGACCAGGTCCTGACAGGGAGC
TACGATGAAACCGCGAAGCTCTGGGATCTCAAGAACGGCCATCAAATCCG
CAAGTTTCAGGGCCACACGGACGGCGTCACCTTCGCCATGGCGGGCCCCG
ACGGCCGCATCCTAACTGCCAGTGAGGACCGGACCTTCCGCGTCTGGGAC
GCCGACACGGGCGACTGCCTTCGCGTCGTCCGCTCCCACAGCGGCTCGGT
CACCTCCCTCTGCATGGCTGGCCCGGACCGCATCGTCAGCGGCTGCTCCG
ACAAGAAGCTCAGGGTGTTCGACATAAACCTCTGGGATCTCAAGAACGGC
CATCAAATCCGCAAGTTTCAGGGCCACACGGACGGCGTCACCTTCGCCAT
GGCGGGCCCCGACGGCCGCATCCTAACTGCCAGTGAGGACCGGACCTTCC
GCGTCTGGGACGCCGACACGGGCGACTGCCTTCGCGTCGTCCGCTCCCAC
AGCGGCTCGGTCACCTCCCTCTGCATGGCTGGCCCGGACCGCATCGTCAG
CGGCTGCTCCGACAAGAAGCTCAGGGTGTTCGACATAAAC
back to top