mRNA_P-fluviatile_contig14.2328.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2328.1
Unique NamemRNA_P-fluviatile_contig14.2328.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2328.1 vs. uniprot
Match: A0A6H5KH49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH49_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 9.140e-65
Identity = 100/112 (89.29%), Postives = 108/112 (96.43%), Query Frame = 3 
Query:   48 MAAAASKNEEINVVGEQRNWEQRVTSELEIAKAWCDSWGPLYEGATTQQQQIATLEEKLKRMPGDQGTRTNYQLSFTGEAPFDEYPVGLTNQKPIRMEDVEKLAKEMMAAQQ 383
            MAAAASKNEE NVVG+QRNWEQRVTSELE+AKAWC++WGPLYEGATTQQQQ+ +LEEKLKRMPGDQGTRTNYQLSFTG APFDEYPVGLTNQKP+RMEDVE+LAKEMM AQQ
Sbjct:    1 MAAAASKNEEKNVVGDQRNWEQRVTSELEVAKAWCENWGPLYEGATTQQQQLKSLEEKLKRMPGDQGTRTNYQLSFTGGAPFDEYPVGLTNQKPLRMEDVEELAKEMMVAQQ 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH49_9PHAE9.140e-6589.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2928954..2930601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004190.1
Exons2
Model size1010
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2328.1prot_P-fluviatile_contig14.2328.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2929542..2930554 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.1466627-UTR-P-fluviatile_contig14:2928953..29295411622815636.1466627-UTR-P-fluviatile_contig14:2928953..2929541Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2928954..2929541 -
1693562627.5774498-UTR-P-fluviatile_contig14:2928953..29295411693562627.5774498-UTR-P-fluviatile_contig14:2928953..2929541Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2928954..2929541 -
1622815636.1852276-UTR-P-fluviatile_contig14:2930554..29306011622815636.1852276-UTR-P-fluviatile_contig14:2930554..2930601Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2930555..2930601 -
1693562627.6119452-UTR-P-fluviatile_contig14:2930554..29306011693562627.6119452-UTR-P-fluviatile_contig14:2930554..2930601Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2930555..2930601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.1570177-CDS-P-fluviatile_contig14:2929541..29297341622815636.1570177-CDS-P-fluviatile_contig14:2929541..2929734Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2929542..2929734 -
1693562627.5928624-CDS-P-fluviatile_contig14:2929541..29297341693562627.5928624-CDS-P-fluviatile_contig14:2929541..2929734Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2929542..2929734 -
1622815636.173543-CDS-P-fluviatile_contig14:2930372..29305541622815636.173543-CDS-P-fluviatile_contig14:2930372..2930554Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2930373..2930554 -
1693562627.6038659-CDS-P-fluviatile_contig14:2930372..29305541693562627.6038659-CDS-P-fluviatile_contig14:2930372..2930554Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2930373..2930554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2328.1

>prot_P-fluviatile_contig14.2328.1 ID=prot_P-fluviatile_contig14.2328.1|Name=mRNA_P-fluviatile_contig14.2328.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=125bp
MAAAASKNEEINVVGEQRNWEQRVTSELEIAKAWCDSWGPLYEGATTQQQ
QIATLEEKLKRMPGDQGTRTNYQLSFTGEAPFDEYPVGLTNQKPIRMEDV
EKLAKEMMAAQQQGSKLNRTGNRS*
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mRNA from alignment at P-fluviatile_contig14:2928954..2930601-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2328.1 ID=mRNA_P-fluviatile_contig14.2328.1|Name=mRNA_P-fluviatile_contig14.2328.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1648bp|location=Sequence derived from alignment at P-fluviatile_contig14:2928954..2930601- (Porterinema fluviatile SAG_2381)
GCCACTTACACCACACACACGCACTGCAGAGAGCTTGAAGCCGCGCGATG
GCGGCAGCTGCTTCGAAAAACGAAGAAATAAACGTCGTGGGAGAGCAACG
AAACTGGGAGCAGAGAGTTACTTCGGAGCTCGAGATCGCGAAGGCGTGGT
GTGACTCATGGGGCCCGCTCTACGAGGGGGCCACAACGCAGCAGCAGCAG
ATCGCGACGCTGGAAGAAAAATTAAAGCGGTGAGTGGGCCACTTTCATCG
CTGAGAGTGACCCTCACAGAACCTTCCCTTCACCTTCACTTCGACGCAGT
CGTAGCGCCGAGTCTGTTCCTTGTGTTACGTGGATTTTCCGCCACACTCG
CGGCATGATGCATAGACTAGTCGACATGTACGAAGTCTCGTCGACCTCTC
CCGAGGGGCGCTCCGATGCACCGCCGCACTCGATGGCATATTATCCTTTC
AGGCAACGGCATGAAGTGATAACAATGCAAGAGGACTAGGTTCTCAGCCT
TAACCCGGAGGAGTGGAGCGGAGTGGACGATAAACCCGAAATCTTGCTTG
CTCGAGCACAACTTAACCTGTGTGCCCATGAATCCAGATCCATCGACGGG
GGACGTTTGGATAGAGCGCGGCAAAAACCCGCAAAAAATACCACAAGCAA
TATTACAGCGTCACAAAATTTAGGAATGAAAAAGATGGAGGGAATGTTTG
CGTTGTGCTGTACAATAATACTTCGTATGCAAAACAAAAAACAAGCAGAC
GTGCTTTCGGTTGTGCGATGCTCCCTCGTGATAGGTGGCGTCGACTTTCT
CACCCCGACTACGTGCGACAACCGAGTTGCTAGCATGCTTTCGTTGTGGA
TGCTACTTTTTTTACAGGATGCCTGGAGACCAGGGGACACGAACGAACTA
CCAGCTATCCTTCACTGGAGAAGCGCCGTTTGACGAGTATCCTGTTGGAC
TCACTAACCAGAAACCCATCAGGATGGAGGACGTGGAAAAACTCGCGAAG
GAAATGATGGCTGCACAGCAACAAGGCAGCAAGCTCAACAGAACTGGCAA
TCGATCATGATAATGAGAAAAACGGCTCAATTATGGGGGCATTCTCGTAC
AAAATGAGGAAGGGTCTTCGTAGACGTTGATTGTATGTGGGACAGGGGTG
TGCGTGGCCCGCTGTTGTTTTGTGTTCGTGCAATTGGAACTGTCCTCCAC
GACCCAAAGGTAAGGGTATGGCCTTCGCCGCGATATCAATATCCTAGCTG
ACTCTCTGTAAAAACGTGGATCCCACGGAGTTGGATACTTTCCTCTCATT
GCAGCAGGCTGTGGTGCGCCCGCGGGACAAATTCACACGATCATTTTCCC
TCGTACTTGCTACCACCCCTACGAGGACATGGTCGAAGCTTCGGCACGAA
ACCGGCGATGATGCTCGTTGGTGTCGTAAAGCGAACAAGGAAACACTGTC
CCCGAGAGTGAAACGGGAAGCAAGCTGACTGTTGTGAATGTTTTGCCTGG
ATACGCGGCGGTTCTTGTTCTCGCCTGCCACCGAGAAGAGGCGGTCAGCA
AGGGCAGTAAAACTGATGTAGCCACAGTGCCCAAATCACGTAAAAAAACA
GCAGGAACCGTCAGAGCGTAACGGCTGTAGCACGACAAAGCAATCACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:2928954..2930601-

>mRNA_P-fluviatile_contig14.2328.1 ID=mRNA_P-fluviatile_contig14.2328.1|Name=mRNA_P-fluviatile_contig14.2328.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=750bp|location=Sequence derived from alignment at P-fluviatile_contig14:2928954..2930601- (Porterinema fluviatile SAG_2381)
ATGGCGGCAGCTGCTTCGAAAAACGAAGAAATAAACGTCGTGGGAGAGCA
ACGAAACTGGGAGCAGAGAGTTACTTCGGAGCTCGAGATCGCGAAGGCGT
GGTGTGACTCATGGGGCCCGCTCTACGAGGGGGCCACAACGCAGCAGCAG
CAGATCGCGACGCTGGAAGAAAAATTAAAGCGATGGCGGCAGCTGCTTCG
AAAAACGAAGAAATAAACGTCGTGGGAGAGCAACGAAACTGGGAGCAGAG
AGTTACTTCGGAGCTCGAGATCGCGAAGGCGTGGTGTGACTCATGGGGCC
CGCTCTACGAGGGGGCCACAACGCAGCAGCAGCAGATCGCGACGCTGGAA
GAAAAATTAAAGCGGATGCCTGGAGACCAGGGGACACGAACGAACTACCA
GCTATCCTTCACTGGAGAAGCGCCGTTTGACGAGTATCCTGTTGGACTCA
CTAACCAGAAACCCATCAGGATGGAGGACGTGGAAAAACTCGCGAAGGAA
ATGATGGCTGCACAGCAACAAGGCAGCAAGCTCAACAGAACTGGCAATCG
ATCATGAGATGCCTGGAGACCAGGGGACACGAACGAACTACCAGCTATCC
TTCACTGGAGAAGCGCCGTTTGACGAGTATCCTGTTGGACTCACTAACCA
GAAACCCATCAGGATGGAGGACGTGGAAAAACTCGCGAAGGAAATGATGG
CTGCACAGCAACAAGGCAGCAAGCTCAACAGAACTGGCAATCGATCATGA
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