mRNA_P-fluviatile_contig14.2303.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2303.1
Unique NamemRNA_P-fluviatile_contig14.2303.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2303.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.010e-29
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 2 
Query:  128 GEYVVKDWIDPPLHLHCAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSAPAID 295
            GEYVVKDW DPPLHLHCAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSAPAID
Sbjct:  169 GEYVVKDWTDPPLHLHCAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSAPAID 224
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BLAST of mRNA_P-fluviatile_contig14.2303.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.390e-27
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 2 
Query:  128 GEYVVKDWIDPPLHLHCAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSAPAIDV 298
            G+YVVKDWIDPPLHLHCAKRLWRAKVDEIL  K+ LKDIGTTA+KES+QPSAPAID+
Sbjct:  169 GDYVVKDWIDPPLHLHCAKRLWRAKVDEILTSKQNLKDIGTTAQKESAQPSAPAIDL 225
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BLAST of mRNA_P-fluviatile_contig14.2303.1 vs. uniprot
Match: A0A6H5K6X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.180e-23
Identity = 47/56 (83.93%), Postives = 49/56 (87.50%), Query Frame = 2 
Query:  128 GEYVVKDWIDPPLHLHCAKRLWRAKVDEILREKKILKDIGTTAEKESSQPSAPAID 295
            G YVVK W DPPL LHCAKRLWRAKVDEIL  K+ LKDIGTTAEKES+QPSAPAID
Sbjct:   76 GAYVVKGWSDPPLPLHCAKRLWRAKVDEILACKQNLKDIGTTAEKESAQPSAPAID 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLP4_9PHAE1.010e-2998.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ5_9PHAE5.390e-2785.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X3_9PHAE1.180e-2383.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2616619..2617678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002400.1
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.5871778-CDS-P-fluviatile_contig14:2616618..26167451622815632.5871778-CDS-P-fluviatile_contig14:2616618..2616745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2616619..2616745 +
1693562577.2428086-CDS-P-fluviatile_contig14:2616618..26167451693562577.2428086-CDS-P-fluviatile_contig14:2616618..2616745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2616619..2616745 +
1622815632.5996425-CDS-P-fluviatile_contig14:2617499..26176781622815632.5996425-CDS-P-fluviatile_contig14:2617499..2617678Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2617500..2617678 +
1693562577.2534025-CDS-P-fluviatile_contig14:2617499..26176781693562577.2534025-CDS-P-fluviatile_contig14:2617499..2617678Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2617500..2617678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2303.1prot_P-fluviatile_contig14.2303.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2616619..2617678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2303.1

>prot_P-fluviatile_contig14.2303.1 ID=prot_P-fluviatile_contig14.2303.1|Name=mRNA_P-fluviatile_contig14.2303.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
PLKKIRTEEPSSSKRKFLAGNPLWPCPSNYCDGLLKKIPKTKRRVRRQGL
DRPSPPPPLCEAPLAGEGRRDPQGEEDPEGHRYYRGEGELPAFGASHRRL
K*
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mRNA from alignment at P-fluviatile_contig14:2616619..2617678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2303.1 ID=mRNA_P-fluviatile_contig14.2303.1|Name=mRNA_P-fluviatile_contig14.2303.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1060bp|location=Sequence derived from alignment at P-fluviatile_contig14:2616619..2617678+ (Porterinema fluviatile SAG_2381)
CCCTTGAAGAAGATCAGGACTGAAGAACCATCTTCCTCAAAGCGGAAGTT
CCTCGCCGGGAATCCACTCTGGCCGTGCCCCAGCAACTACTGCGACGGCC
TTTTGAAGAAGATCCCCAAGACCAAGAGTGGATTTTTCACGCCTTGCGAC
CAGAAGCAGTCCAACGATCTGAACACCTGTCAGGTCTCGTGCTCTTTTTT
GAGCGAGCGAGGACCAAACCCCGTCAAGTGCGAACTGTGCTTGACGCCTG
TAGGAGGGACACCTTCTCTCGGTGTTCTGTCCGAGAGAAGACCGATCAAG
GCCGAGACGGTGAGCCACGCACATAAAGATAAGCCTAAAGATATCCTAAG
ATGCTCAGCCCTTTTGCTGTATCTTTGCTCGGTTGCTCTATCTTAAGATG
CACGCCCCTTTTGCTGTATCTTTGCTGGGAGCAACCGATTGTATACGACA
TAAACGTCACTCCATTTCACAGCCCCGCGGAAACTAACCGTTGCAAGGAT
CGCAAACAATACAGAGTGGCTGAATATACACGCGGTGTGGAAGTTGTGCG
CCGGGGCGACGACATCTGACGGTGGAAAGTACAAGAACGCCACCCTCGCC
AACGGGGAAATCGTTGGGGTAAGTTATCCAGTCTGCGTTCTACCTGATGA
AATTTGTGCATAAGTTGTACTGTGTGTGATCGTACTATCCGGAGCCTCTT
TTTTCTTCCCGCATCTGCCGGATTTCCTCGCATTTTCGTGGACGTCTATA
CTGCTGTATCAATCATCCTTTTTTTCCCCCCGTATTTTGTTTGTCCGGGT
TTTCAGCGCCCGTGTAGCTGCTTCGACCCGGAGAAACACGTCGACGACAT
CAAAGAGGGGTGCACGGGAGACATCCAAGAGGGCGAGTACGTCGTCAAGG
ATTGGATCGACCCTCCCCTCCACCTCCACTGTGCGAAGCGCCTCTGGCGG
GCGAAGGTCGACGAGATCCTCAGGGAGAAGAAGATCCTGAAGGACATCGG
TACTACCGCGGAGAAGGAGAGCTCCCAGCCTTCGGCGCCAGCCATCGACG
TTTAAAGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:2616619..2617678+

>mRNA_P-fluviatile_contig14.2303.1 ID=mRNA_P-fluviatile_contig14.2303.1|Name=mRNA_P-fluviatile_contig14.2303.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig14:2616619..2617678+ (Porterinema fluviatile SAG_2381)
CCCTTGAAGAAGATCAGGACTGAAGAACCATCTTCCTCAAAGCGGAAGTT
CCTCGCCGGGAATCCACTCTGGCCGTGCCCCAGCAACTACTGCGACGGCC
TTTTGAAGAAGATCCCCAAGACCAAGACCCTTGAAGAAGATCAGGACTGA
AGAACCATCTTCCTCAAAGCGGAAGTTCCTCGCCGGGAATCCACTCTGGC
CGTGCCCCAGCAACTACTGCGACGGCCTTTTGAAGAAGATCCCCAAGACC
AAGAGGCGAGTACGTCGTCAAGGATTGGATCGACCCTCCCCTCCACCTCC
ACTGTGCGAAGCGCCTCTGGCGGGCGAAGGTCGACGAGATCCTCAGGGAG
AAGAAGATCCTGAAGGACATCGGTACTACCGCGGAGAAGGAGAGCTCCCA
GCCTTCGGCGCCAGCCATCGACGTTTAAAGTGAGGCGAGTACGTCGTCAA
GGATTGGATCGACCCTCCCCTCCACCTCCACTGTGCGAAGCGCCTCTGGC
GGGCGAAGGTCGACGAGATCCTCAGGGAGAAGAAGATCCTGAAGGACATC
GGTACTACCGCGGAGAAGGAGAGCTCCCAGCCTTCGGCGCCAGCCATCGA
CGTTTAAAGTGA
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