mRNA_P-fluviatile_contig14.2288.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2288.1
Unique NamemRNA_P-fluviatile_contig14.2288.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig14.2288.1 vs. uniprot
Match: D7FNR8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNR8_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.550e-77
Identity = 193/349 (55.30%), Postives = 222/349 (63.61%), Query Frame = 3 
Query:  375 SSCSYLTRRQRSYATAASHNNPHSLGLPSSGAGGLIPNHERGSLQSSQAGS---------RNRRRGSPFAALSEAYKPPRAGLFRSGGRGGIGGGEVLALRSS-NF-AWPKTVE---TLPADPRRLQRLKDGVLSAAEMEV-TSRTNKAVLPLSRKRSTDENAVESRWVSSSSAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSQRQQHRRSVSWGRS---SVHEFVVNGTQTQADVYSPDLHSIELAKALAAHARDPELRRAALAVENCRRHAAMIVRSLTSKQDGGVDGVEEACRLYSWREAAFLRETDELVRRIVVGAGEEEVWRLKASYRTARRKMEDHCSD 1367
            SS SYLTRRQRSYA+ ASHNNPHSL  P S A  LIPNHERG+LQ+              R RRRGSPFAALSEAYKP RA +F    R    GGEVL LRSS +F AWP+       LPADPR +Q+ +    + AE+++ T                       RW        XXXXXXXXXXXXXXXXXX               + HR+SVSW      SVH F V    +QADVYSPDL ++E+AK LA  AR+PELRRAAL V+ CRRHAA +VRS+TS Q+GG+DGVEEACRLY WRE  FLRETDELVR IVV  GE+EVWRLK+S+R ARR+MED  SD
Sbjct:    2 SSPSYLTRRQRSYASHASHNNPHSL-EPFSAA--LIPNHERGTLQTFPGAGGGXXXXXXPRGRRRGSPFAALSEAYKPARAPVFSRPRR--RDGGEVLGLRSSCSFVAWPRPGGGDGLLPADPRHVQQKRPQRQAGAEVQIITXXXXXXXXXXXXXXXXXXXXXLGRWXXXXXXXXXXXXXXXXXXXXXXXXXXS--------------RSHRKSVSWPEDVIRSVHRFPV--AASQADVYSPDLQAVEIAKELAVRARNPELRRAALQVDYCRRHAAQVVRSMTSAQNGGLDGVEEACRLYGWREETFLRETDELVRSIVVEGGEKEVWRLKSSFRAARRRMEDAESD 329
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNR8_ECTSI2.550e-7755.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2482380..2484274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004510.1
Exons2
Model size1406
Cds size1005
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2288.1prot_P-fluviatile_contig14.2288.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2482416..2483420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.1644666-UTR-P-fluviatile_contig14:2482379..24824151622815630.1644666-UTR-P-fluviatile_contig14:2482379..2482415Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2482380..2482415 -
1693562556.8158185-UTR-P-fluviatile_contig14:2482379..24824151693562556.8158185-UTR-P-fluviatile_contig14:2482379..2482415Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2482380..2482415 -
1622815630.1940877-UTR-P-fluviatile_contig14:2483420..24836631622815630.1940877-UTR-P-fluviatile_contig14:2483420..2483663Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2483421..2483663 -
1693562556.8311267-UTR-P-fluviatile_contig14:2483420..24836631693562556.8311267-UTR-P-fluviatile_contig14:2483420..2483663Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2483421..2483663 -
1622815630.209561-UTR-P-fluviatile_contig14:2484152..24842741622815630.209561-UTR-P-fluviatile_contig14:2484152..2484274Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2484153..2484274 -
1693562556.8396938-UTR-P-fluviatile_contig14:2484152..24842741693562556.8396938-UTR-P-fluviatile_contig14:2484152..2484274Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2484153..2484274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.1816752-CDS-P-fluviatile_contig14:2482415..24834201622815630.1816752-CDS-P-fluviatile_contig14:2482415..2483420Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2482416..2483420 -
1693562556.8234184-CDS-P-fluviatile_contig14:2482415..24834201693562556.8234184-CDS-P-fluviatile_contig14:2482415..2483420Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2482416..2483420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2288.1

>prot_P-fluviatile_contig14.2288.1 ID=prot_P-fluviatile_contig14.2288.1|Name=mRNA_P-fluviatile_contig14.2288.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=335bp
MPSSSCSYLTRRQRSYATAASHNNPHSLGLPSSGAGGLIPNHERGSLQSS
QAGSRNRRRGSPFAALSEAYKPPRAGLFRSGGRGGIGGGEVLALRSSNFA
WPKTVETLPADPRRLQRLKDGVLSAAEMEVTSRTNKAVLPLSRKRSTDEN
AVESRWVSSSSAATAAAAAESAAVAAQVIAEIIEAAATGAATPQSQRQQH
RRSVSWGRSSVHEFVVNGTQTQADVYSPDLHSIELAKALAAHARDPELRR
AALAVENCRRHAAMIVRSLTSKQDGGVDGVEEACRLYSWREAAFLRETDE
LVRRIVVGAGEEEVWRLKASYRTARRKMEDHCSD*
back to top

mRNA from alignment at P-fluviatile_contig14:2482380..2484274-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2288.1 ID=mRNA_P-fluviatile_contig14.2288.1|Name=mRNA_P-fluviatile_contig14.2288.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1895bp|location=Sequence derived from alignment at P-fluviatile_contig14:2482380..2484274- (Porterinema fluviatile SAG_2381)
CACCCGGCTTGCGCTCTCGCCACAGCAGTTTCAGCAACCGGACCCCACAT
CTGACAACGACAATAACACTGAACAACAGCAGCAGGCTTCTGCTGTAACG
CACTCCACTACCCGACTCACAGGTGAGACTGCTTTGCGGCGAGCGACGGA
GAGCGTGAAGAGAGGATTTTTTATTGCGTGCGTGATCCATGCGGTTTCTT
TTTTTAAACCGCCTCGGATCGACGTGAAATGTTTGAATCTCCACAGATGA
CGTCGCTGTACACGCCTGCTGCCGCGTTCGCTCCCACGGCGCGCGCGCTG
GCCTTGCTTGTACCATTCGGCCTCGTCGTGACTGGTACGCGAGGTATTCC
CTTGGCTCTCAGGCCATGATCGCCTGTGTCGTGCTTGCGCTCTCCACGGT
AATTTCTGTGGTTGTTGACGTTTGACGTTTTGCGGGCACTTTTATCCTCC
GCTCTCACCGCGCGCGTGGAACCCGCGTCGACCACGTCGCCTCCATTCCC
GTGGCCCAATCTTCAGTAGAGGCTGATCCATCTCTCCTTCCCTCTCTTTC
TTCCTCCTTCGCTCCCTCTTCGTCCCGCCGCGCTCTGCATTCTCTCCAAC
TGCGAATGCAGATACTTCAACGACATCACAGCTTTACTCCGCCTTCAAAA
CACGGAATAGATCGGCGCGGCGGCGTATTACGTGTTCCGCGTCAACCAGC
AACCAACAGCGAGGGAGAAAAGAGGCAGAATCTCAGCACTGTCTAGTCCT
TGACAGCAGCTGCCACGCCGGCCTGCAGCCCAGGAGTACAACCGTCAGTA
GCAATCCTCAACAAGCTTCCCGTCAACTCCCTTCGCACCACGTCGTTCGC
GAAGATGCCGTCCTCCTCCTGTTCGTACCTCACCCGGCGGCAGCGGTCGT
ACGCAACGGCGGCCTCGCACAACAACCCGCATAGCCTCGGGCTGCCGTCG
TCGGGCGCCGGCGGCCTGATCCCGAACCACGAGCGGGGGAGCCTGCAGTC
CTCCCAAGCCGGCAGCAGGAACAGGCGTCGAGGGTCGCCCTTTGCTGCGC
TATCGGAGGCCTACAAGCCCCCGCGGGCAGGCCTGTTCCGCTCCGGCGGC
CGTGGCGGCATCGGCGGCGGAGAGGTGCTCGCGCTGCGGTCGTCCAACTT
CGCGTGGCCGAAGACGGTCGAAACGTTGCCGGCGGACCCGCGGCGCCTGC
AACGTCTCAAGGACGGGGTTCTGTCGGCGGCGGAGATGGAGGTGACGTCG
CGCACTAACAAGGCCGTCCTGCCCCTCTCGCGGAAGCGCAGCACGGACGA
AAACGCCGTCGAAAGCAGGTGGGTGAGCTCGTCCTCGGCCGCCACCGCGG
CGGCGGCGGCGGAGAGCGCCGCCGTCGCCGCCCAGGTCATCGCCGAAATC
ATCGAGGCGGCGGCAACGGGGGCGGCCACGCCGCAGTCGCAGCGGCAGCA
GCACCGGCGATCGGTGTCATGGGGCAGGTCTTCCGTCCATGAGTTCGTTG
TTAACGGGACCCAGACCCAGGCCGACGTCTACTCGCCCGACCTGCATTCG
ATTGAGCTGGCCAAGGCGCTGGCAGCGCACGCCCGAGACCCGGAGCTGCG
GCGGGCGGCGCTCGCCGTCGAGAACTGCCGGCGGCACGCCGCCATGATCG
TGCGGTCCCTTACGTCGAAGCAGGACGGCGGGGTCGACGGCGTCGAGGAG
GCCTGCCGCCTGTATAGCTGGAGAGAGGCGGCATTTCTACGGGAGACGGA
CGAGCTCGTGCGGAGAATCGTGGTGGGTGCCGGGGAGGAAGAGGTGTGGC
GGCTCAAGGCGAGCTACCGCACGGCGCGCCGGAAGATGGAGGACCACTGC
TCGGACTGAAAAAATTGGGCTTGGGTGGATTTTGATTTTTTTGCT
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:2482380..2484274-

>mRNA_P-fluviatile_contig14.2288.1 ID=mRNA_P-fluviatile_contig14.2288.1|Name=mRNA_P-fluviatile_contig14.2288.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2010bp|location=Sequence derived from alignment at P-fluviatile_contig14:2482380..2484274- (Porterinema fluviatile SAG_2381)
ATGCCGTCCTCCTCCTGTTCGTACCTCACCCGGCGGCAGCGGTCGTACGC
AACGGCGGCCTCGCACAACAACCCGCATAGCCTCGGGCTGCCGTCGTCGG
GCGCCGGCGGCCTGATCCCGAACCACGAGCGGGGGAGCCTGCAGTCCTCC
CAAGCCGGCAGCAGGAACAGGCGTCGAGGGTCGCCCTTTGCTGCGCTATC
GGAGGCCTACAAGCCCCCGCGGGCAGGCCTGTTCCGCTCCGGCGGCCGTG
GCGGCATCGGCGGCGGAGAGGTGCTCGCGCTGCGGTCGTCCAACTTCGCG
TGGCCGAAGACGGTCGAAACGTTGCCGGCGGACCCGCGGCGCCTGCAACG
TCTCAAGGACGGGGTTCTGTCGGCGGCGGAGATGGAGGTGACGTCGCGCA
CTAACAAGGCCGTCCTGCCCCTCTCGCGGAAGCGCAGCACGGACGAAAAC
GCCGTCGAAAGCAGGTGGGTGAGCTCGTCCTCGGCCGCCACCGCGGCGGC
GGCGGCGGAGAGCGCCGCCGTCGCCGCCCAGGTCATCGCCGAAATCATCG
AGGCGGCGGCAACGGGGGCGGCCACGCCGCAGTCGCAGCGGCAGCAGCAC
CGGCGATCGGTGTCATGGGGCAGGTCTTCCGTCCATGAGTTCGTTGTTAA
CGGGACCCAGACCCAGGCCGACGTCTACTCGCCCGACCTGCATTCGATTG
AGCTGGCCAAGGCGCTGGCAGCGCACGCCCGAGACCCGGAGCTGCGGCGG
GCGGCGCTCGCCGTCGAGAACTGCCGGCGGCACGCCGCCATGATCGTGCG
GTCCCTTACGTCGAAGCAGGACGGCGGGGTCGACGGCGTCGAGGAGGCCT
GCCGCCTGTATAGCTGGAGAGAGGCGGCATTTCTACGGGAGACGGACGAG
CTCGTGCGGAGAATCGTGGTGGGTGCCGGGGAGGAAGAGGTGTGGCGGCT
CAAGGCGAGCTACCGCACGGCGCGCCGGAAGATGGAGGACCACTGCTCGG
ACTGAATGCCGTCCTCCTCCTGTTCGTACCTCACCCGGCGGCAGCGGTCG
TACGCAACGGCGGCCTCGCACAACAACCCGCATAGCCTCGGGCTGCCGTC
GTCGGGCGCCGGCGGCCTGATCCCGAACCACGAGCGGGGGAGCCTGCAGT
CCTCCCAAGCCGGCAGCAGGAACAGGCGTCGAGGGTCGCCCTTTGCTGCG
CTATCGGAGGCCTACAAGCCCCCGCGGGCAGGCCTGTTCCGCTCCGGCGG
CCGTGGCGGCATCGGCGGCGGAGAGGTGCTCGCGCTGCGGTCGTCCAACT
TCGCGTGGCCGAAGACGGTCGAAACGTTGCCGGCGGACCCGCGGCGCCTG
CAACGTCTCAAGGACGGGGTTCTGTCGGCGGCGGAGATGGAGGTGACGTC
GCGCACTAACAAGGCCGTCCTGCCCCTCTCGCGGAAGCGCAGCACGGACG
AAAACGCCGTCGAAAGCAGGTGGGTGAGCTCGTCCTCGGCCGCCACCGCG
GCGGCGGCGGCGGAGAGCGCCGCCGTCGCCGCCCAGGTCATCGCCGAAAT
CATCGAGGCGGCGGCAACGGGGGCGGCCACGCCGCAGTCGCAGCGGCAGC
AGCACCGGCGATCGGTGTCATGGGGCAGGTCTTCCGTCCATGAGTTCGTT
GTTAACGGGACCCAGACCCAGGCCGACGTCTACTCGCCCGACCTGCATTC
GATTGAGCTGGCCAAGGCGCTGGCAGCGCACGCCCGAGACCCGGAGCTGC
GGCGGGCGGCGCTCGCCGTCGAGAACTGCCGGCGGCACGCCGCCATGATC
GTGCGGTCCCTTACGTCGAAGCAGGACGGCGGGGTCGACGGCGTCGAGGA
GGCCTGCCGCCTGTATAGCTGGAGAGAGGCGGCATTTCTACGGGAGACGG
ACGAGCTCGTGCGGAGAATCGTGGTGGGTGCCGGGGAGGAAGAGGTGTGG
CGGCTCAAGGCGAGCTACCGCACGGCGCGCCGGAAGATGGAGGACCACTG
CTCGGACTGA
back to top