mRNA_P-fluviatile_contig14.2211.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2211.1
Unique NamemRNA_P-fluviatile_contig14.2211.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2211.1 vs. uniprot
Match: D7FNN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN6_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 4.290e-138
Identity = 242/358 (67.60%), Postives = 276/358 (77.09%), Query Frame = 1 
Query:  199 MRRVRQVSQLRRASNCLLVTRKHAGGRSYSEYAPAATSPSDLKAPLPEKYSVGKNLQLKAVLFQYDMLAGSNTNRACATASPSSTRSTT------VPKKGRVDFQPVSASGEKLVDEITGLLG---GESLQGMGRKLLADLKDKMGAG-SPASKPKSPADVSEHKQPRRVKDSDLKAKYMEKLRKKTGGGSTSGGLSA-ATSQSGGDADLFAARNLVSSMETANLHSAWMLRQGAGDLLTYIATRSVRVGVIAGPQTTPQEFESFVRQLRQQSIRVTVAISPEDIVADGVEAGVLRAGRELGVGEGEAIGAQVLVVGSSEPLLAAATAAEMFTARYYPLNSRREGVIQTFTVRNIDEV 1239
            MRR R++  LRR S+  +V  K AG R+YSEYAPAA SP+DLKAPLPEK+SVGKNL+LKAVLFQYD+LAGSN  R   TAS S +           P      F P++ SGE LVDEITG+LG   G+ LQ +GR L+ADLKDKMGA  + +S P  PA     ++PR  +DSD KAKYMEKLRKKTG GS S   +A A SQ GGDADLFAARNLVSS E ANLHSAWMLRQGAGDLLTY+A RS+R+GVIAGPQT+P+EFESFVRQLRQQSIRVT A+SPED+  DGVEAGV+RA RELG+GEG   GA VL+VGSS PLL+AAT A MFTARYYP NSRREGVIQTF VR+IDEV
Sbjct:    1 MRRCRELGHLRRWSS--IVVPKSAG-RTYSEYAPAAPSPNDLKAPLPEKFSVGKNLKLKAVLFQYDLLAGSNHERKSITASSSPSXXXXXXXXPGAPASPSTSFDPLTPSGENLVDEITGVLGKGRGDRLQELGRALIADLKDKMGASVTSSSAPTPPAKQQREQRPRVSQDSDPKAKYMEKLRKKTGAGSISASPAATAGSQPGGDADLFAARNLVSSTEAANLHSAWMLRQGAGDLLTYLAARSLRLGVIAGPQTSPREFESFVRQLRQQSIRVTTAVSPEDLELDGVEAGVVRASRELGMGEGRRGGADVLLVGSSNPLLSAATEANMFTARYYPPNSRREGVIQTFVVRDIDEV 355
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNN6_ECTSI4.290e-13867.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1810587..1813417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1250
Cds size1248
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2211.1prot_P-fluviatile_contig14.2211.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1810587..1813417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.781448-CDS-P-fluviatile_contig14:1810586..18111201622815619.781448-CDS-P-fluviatile_contig14:1810586..1811120Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1810587..1811120 -
1693562474.504271-CDS-P-fluviatile_contig14:1810586..18111201693562474.504271-CDS-P-fluviatile_contig14:1810586..1811120Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1810587..1811120 -
1622815619.7949505-CDS-P-fluviatile_contig14:1811649..18119881622815619.7949505-CDS-P-fluviatile_contig14:1811649..1811988Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1811650..1811988 -
1693562474.5151272-CDS-P-fluviatile_contig14:1811649..18119881693562474.5151272-CDS-P-fluviatile_contig14:1811649..1811988Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1811650..1811988 -
1622815619.8081791-CDS-P-fluviatile_contig14:1813042..18134171622815619.8081791-CDS-P-fluviatile_contig14:1813042..1813417Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1813043..1813417 -
1693562474.524995-CDS-P-fluviatile_contig14:1813042..18134171693562474.524995-CDS-P-fluviatile_contig14:1813042..1813417Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1813043..1813417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2211.1

>prot_P-fluviatile_contig14.2211.1 ID=prot_P-fluviatile_contig14.2211.1|Name=mRNA_P-fluviatile_contig14.2211.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=416bp
CLVRRLNHLGPDSSLVQGDYYLSHHSVHAIQVKPYTFWRKHGIETQQQCF
CCYGCCVRRCTSCQKDMRRVRQVSQLRRASNCLLVTRKHAGGRSYSEYAP
AATSPSDLKAPLPEKYSVGKNLQLKAVLFQYDMLAGSNTNRACATASPSS
TRSTTVPKKGRVDFQPVSASGEKLVDEITGLLGGESLQGMGRKLLADLKD
KMGAGSPASKPKSPADVSEHKQPRRVKDSDLKAKYMEKLRKKTGGGSTSG
GLSAATSQSGGDADLFAARNLVSSMETANLHSAWMLRQGAGDLLTYIATR
SVRVGVIAGPQTTPQEFESFVRQLRQQSIRVTVAISPEDIVADGVEAGVL
RAGRELGVGEGEAIGAQVLVVGSSEPLLAAATAAEMFTARYYPLNSRREG
VIQTFTVRNIDEVGAS
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mRNA from alignment at P-fluviatile_contig14:1810587..1813417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2211.1 ID=mRNA_P-fluviatile_contig14.2211.1|Name=mRNA_P-fluviatile_contig14.2211.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2831bp|location=Sequence derived from alignment at P-fluviatile_contig14:1810587..1813417- (Porterinema fluviatile SAG_2381)
TGTCTCGTTAGGCGGCTCAACCACCTCGGGCCGGATTCATCGCTTGTGCA
AGGGGACTACTATCTATCCCATCATAGCGTACACGCCATACAAGTCAAAC
CATACACGTTCTGGCGCAAGCACGGAATCGAAACACAACAGCAGTGTTTT
TGCTGCTACGGCTGTTGTGTCAGGCGCTGCACATCGTGCCAGAAAGACAT
GCGCCGTGTTCGTCAGGTCAGCCAATTAAGGAGGGCATCGAATTGTCTCC
TTGTAACAAGAAAACATGCAGGAGGGAGAAGCTACTCAGAATATGCTCCC
GCGGCGACGTCTCCCAGCGATTTGAAGGCACCCCTGCCTGAAAAATACTC
TGTGGGAAAGAATCTCCAGCTGAAGGCAAGTTGTGGGACACCGTGCGGGC
CCGCAGTTAAGAAACGTCCAATTCGGGTCCAGACTCAATATCTCGTTTTG
GCCGAGGAATTAACCTGAGCCGTTCATTATATTTATTTGAGTTTCTTATT
TTCTGGGATCGCGCTGGGTGACTAACTTGTCATTTTCTTTTTCTACTCGT
TGTGCTGCCGTCGCGTGTTCAGTGTCTAAAATTGCTTTCTTCCGCAGTTG
TGCGATGTAGCCCCAGAAATCAAGAGGCAGAGGCTTGGTGCTTTGGAGGT
GCTTATTGATATCGTCGACCTGACGCGTTGACGGCTTCGTTTGCTCCCGA
GGGCACCCAAGTTGGTCACTCCCTCGAGAGAGGCGGAGGAGAGCGCCATA
AAGGCCGTCCACCAGACAGCATGCAACAGGCCGCGATATCTGCGTAGGTC
CAGCCTGGCGGCTCCTTGGTCGTTTGTCGCGTCCGCGTGTTCGCCTCCCG
GTCGCGCGCAACTTCAAAATTGCAGCGCAAATGCGGGCGCCGCAAAAAAT
ACGCACCCCACAAACTGCATTAGCCAGGAGGTGGGGGGCGCAGGAGAGAA
CATGAGCGGTGTTTCTCACCCCCGACACACTCCCAGCTACCTCGTATTTC
TTATGCTGAGGAGTATCGGACTCTCTTGTTTCCTATTGGGGTATTTGTTG
TGTTGTATTTCCAAGCCCCTTTTTCCTACTTTCGACCAAAAGTTGAGCCA
ATTTTCTCCACGAAATATTTCTTAACTGCGGCCCGTACCTGATCGATTTG
CATGTGAAAGCTTGGATTTTGCTGGCAATGCGTCATTTCATCACTTTTTG
GCTAGCTTAACGTGAAGTTGCTGCATCTCATTTTGGCATGAGATAATGCG
AAACCAGAGCAAGAGTGACCGAATGGTGCCTGCAGGTACGAACCGTTCTT
TCCACTCTCTTATACTGCCGTCCGCCCCGCTGTGGGACGAAATTGCTTGG
TGTCACGCGACGGGCCCATAAGCAGGTGGAATATCTGATTTCTCACCACC
GCGTCCCGTCCGTTGCTCCTTCCCGAAAGGCGGTTTTGTTCCAGTACGAT
ATGCTGGCGGGTTCCAACACCAATCGAGCCTGCGCCACAGCCAGTCCATC
GAGCACCCGCAGCACCACGGTCCCAAAGAAAGGCCGAGTTGATTTTCAAC
CCGTGAGCGCATCCGGAGAAAAGCTTGTCGATGAAATCACCGGTCTGCTG
GGAGGAGAGAGCTTGCAGGGTATGGGGCGGAAATTGCTGGCTGATCTGAA
GGACAAGATGGGTGCGGGCAGCCCGGCCTCCAAACCAAAATCGCCTGCTG
ATGTCTCAGAACACAAGCAGCCAAGAAGAGTCAAGGACTCTGATCTTAAA
GCAAAATACATGGAAAAGGTCAGGTTTGCGATTGTCACGCTCTGGGCGAC
ACTCATACCCTTGGCGCACAGTGCCTGTCGCGCGCCGATGTAACTACCGT
GGCGTTGTCTCTTGTATATTCCCTGGGCGATATTTATTACGAGCATGTAA
TTTCTCACCAGAGACAAGGGAAGCCATCGAAGCACCAAGGCGGATGATCT
TGAAGCTCCTGCGACATTCTAATTGCCTTTTTTTTTCTGGAGGCAGGGGT
CGGTAGAGCTTGGTCGTACTCTAGAACGTGCTTGAATCTCAATTTCCCCC
CTGCCTCTCTCCTGCTAGACTGCATTTTCCGAAGCCGGATTTCTGAACCA
TCGGCTTCAGCATAAGGGGCAAGTAAATTCACGACGAAATCGTGAAATCG
TGCTGCTCTCTGACCCCCCCCCCTCCCAGTATCCCAATATCGCAGCCCCT
TCAATCCTTTCCAGACTTTCCTCTTGCCTTTCTTTCGCTATCTCTGTCTC
TCGCTATCATCTTGCTTTCCCGCGCTCGCCGCCTTGTAAATATGAAGCTG
CGAAAAAAAACTGGCGGAGGGAGCACCTCTGGCGGCCTCAGCGCCGCCAC
CTCTCAATCAGGGGGCGACGCTGATCTTTTCGCGGCGAGGAACCTCGTTT
CCTCCATGGAGACCGCAAATCTGCATTCGGCGTGGATGCTCAGGCAGGGT
GCGGGAGATCTGTTGACCTACATAGCGACACGGAGCGTCCGAGTTGGTGT
TATAGCGGGGCCGCAAACGACCCCGCAAGAATTCGAGAGCTTTGTCAGGC
AGTTGCGGCAGCAGTCCATCCGGGTGACGGTGGCCATTTCACCCGAGGAC
ATTGTAGCGGATGGCGTCGAGGCTGGTGTGCTGAGGGCAGGCAGGGAGCT
CGGGGTGGGAGAAGGAGAAGCAATAGGAGCGCAGGTGCTGGTGGTGGGCT
CCAGCGAGCCCCTTCTTGCCGCGGCGACAGCGGCGGAAATGTTCACCGCC
AGATATTACCCACTGAACAGTCGAAGGGAAGGCGTGATCCAGACTTTTAC
TGTTCGAAACATCGATGAGGTAGGCGCTTCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1810587..1813417-

>mRNA_P-fluviatile_contig14.2211.1 ID=mRNA_P-fluviatile_contig14.2211.1|Name=mRNA_P-fluviatile_contig14.2211.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2496bp|location=Sequence derived from alignment at P-fluviatile_contig14:1810587..1813417- (Porterinema fluviatile SAG_2381)
TGTCTCGTTAGGCGGCTCAACCACCTCGGGCCGGATTCATCGCTTGTGCA
AGGGGACTACTATCTATCCCATCATAGCGTACACGCCATACAAGTCAAAC
CATACACGTTCTGGCGCAAGCACGGAATCGAAACACAACAGCAGTGTTTT
TGCTGCTACGGCTGTTGTGTCAGGCGCTGCACATCGTGCCAGAAAGACAT
GCGCCGTGTTCGTCAGGTCAGCCAATTAAGGAGGGCATCGAATTGTCTCC
TTGTAACAAGAAAACATGCAGGAGGGAGAAGCTACTCAGAATATGCTCCC
GCGGCGACGTCTCCCAGCGATTTGAAGGCACCCCTGCCTGAAAAATACTC
TGTGGGAAAGAATCTCCAGCTGAAGTGTCTCGTTAGGCGGCTCAACCACC
TCGGGCCGGATTCATCGCTTGTGCAAGGGGACTACTATCTATCCCATCAT
AGCGTACACGCCATACAAGTCAAACCATACACGTTCTGGCGCAAGCACGG
AATCGAAACACAACAGCAGTGTTTTTGCTGCTACGGCTGTTGTGTCAGGC
GCTGCACATCGTGCCAGAAAGACATGCGCCGTGTTCGTCAGGTCAGCCAA
TTAAGGAGGGCATCGAATTGTCTCCTTGTAACAAGAAAACATGCAGGAGG
GAGAAGCTACTCAGAATATGCTCCCGCGGCGACGTCTCCCAGCGATTTGA
AGGCACCCCTGCCTGAAAAATACTCTGTGGGAAAGAATCTCCAGCTGAAG
GCGGTTTTGTTCCAGTACGATATGCTGGCGGGTTCCAACACCAATCGAGC
CTGCGCCACAGCCAGTCCATCGAGCACCCGCAGCACCACGGTCCCAAAGA
AAGGCCGAGTTGATTTTCAACCCGTGAGCGCATCCGGAGAAAAGCTTGTC
GATGAAATCACCGGTCTGCTGGGAGGAGAGAGCTTGCAGGGTATGGGGCG
GAAATTGCTGGCTGATCTGAAGGACAAGATGGGTGCGGGCAGCCCGGCCT
CCAAACCAAAATCGCCTGCTGATGTCTCAGAACACAAGCAGCCAAGAAGA
GTCAAGGACTCTGATCTTAAAGCAAAATACATGGAAAAGGCGGTTTTGTT
CCAGTACGATATGCTGGCGGGTTCCAACACCAATCGAGCCTGCGCCACAG
CCAGTCCATCGAGCACCCGCAGCACCACGGTCCCAAAGAAAGGCCGAGTT
GATTTTCAACCCGTGAGCGCATCCGGAGAAAAGCTTGTCGATGAAATCAC
CGGTCTGCTGGGAGGAGAGAGCTTGCAGGGTATGGGGCGGAAATTGCTGG
CTGATCTGAAGGACAAGATGGGTGCGGGCAGCCCGGCCTCCAAACCAAAA
TCGCCTGCTGATGTCTCAGAACACAAGCAGCCAAGAAGAGTCAAGGACTC
TGATCTTAAAGCAAAATACATGGAAAAGCTGCGAAAAAAAACTGGCGGAG
GGAGCACCTCTGGCGGCCTCAGCGCCGCCACCTCTCAATCAGGGGGCGAC
GCTGATCTTTTCGCGGCGAGGAACCTCGTTTCCTCCATGGAGACCGCAAA
TCTGCATTCGGCGTGGATGCTCAGGCAGGGTGCGGGAGATCTGTTGACCT
ACATAGCGACACGGAGCGTCCGAGTTGGTGTTATAGCGGGGCCGCAAACG
ACCCCGCAAGAATTCGAGAGCTTTGTCAGGCAGTTGCGGCAGCAGTCCAT
CCGGGTGACGGTGGCCATTTCACCCGAGGACATTGTAGCGGATGGCGTCG
AGGCTGGTGTGCTGAGGGCAGGCAGGGAGCTCGGGGTGGGAGAAGGAGAA
GCAATAGGAGCGCAGGTGCTGGTGGTGGGCTCCAGCGAGCCCCTTCTTGC
CGCGGCGACAGCGGCGGAAATGTTCACCGCCAGATATTACCCACTGAACA
GTCGAAGGGAAGGCGTGATCCAGACTTTTACTGTTCGAAACATCGATGAG
GTAGGCGCTTCACTGCGAAAAAAAACTGGCGGAGGGAGCACCTCTGGCGG
CCTCAGCGCCGCCACCTCTCAATCAGGGGGCGACGCTGATCTTTTCGCGG
CGAGGAACCTCGTTTCCTCCATGGAGACCGCAAATCTGCATTCGGCGTGG
ATGCTCAGGCAGGGTGCGGGAGATCTGTTGACCTACATAGCGACACGGAG
CGTCCGAGTTGGTGTTATAGCGGGGCCGCAAACGACCCCGCAAGAATTCG
AGAGCTTTGTCAGGCAGTTGCGGCAGCAGTCCATCCGGGTGACGGTGGCC
ATTTCACCCGAGGACATTGTAGCGGATGGCGTCGAGGCTGGTGTGCTGAG
GGCAGGCAGGGAGCTCGGGGTGGGAGAAGGAGAAGCAATAGGAGCGCAGG
TGCTGGTGGTGGGCTCCAGCGAGCCCCTTCTTGCCGCGGCGACAGCGGCG
GAAATGTTCACCGCCAGATATTACCCACTGAACAGTCGAAGGGAAGGCGT
GATCCAGACTTTTACTGTTCGAAACATCGATGAGGTAGGCGCTTCA
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