prot_P-fluviatile_contig14.2178.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig14.2178.1
Unique Nameprot_P-fluviatile_contig14.2178.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length309
Homology
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BLAST of mRNA_P-fluviatile_contig14.2178.1 vs. uniprot
Match: D7FNJ2_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ2_ECTSI)

HSP 1 Score: 292 bits (748), Expect = 1.550e-95
Identity = 197/310 (63.55%), Postives = 218/310 (70.32%), Query Frame = 0 
Query:    1 MSAEDAFFQEA--GSLGEATDPSVAPPAGYVDAGSAPPLVYGIPDPATYDLGGAGGGDDQLDXXXXGDQFGXXXXXXXXXXXXXXXXXXXXXXXXXXGADDGGMFGGGGXXXXXXXXXXAEDHFGGMPMQASSTPRQPKPTDPYGLEETAGIIEEANSQFKAAVKARAEKEAAKAAEVKRLAEEELDGFYDQRTDEVARRQARSREQEEAFLKAVNASIAGSTSNPWARICDLVDLKKPIVSSRPATSGSARASGXXXXXXXXGKRRASVAAQSRGMDEEDLFRATEKMRSLIIQLKADTAASNTGDDTG 308
            MS ED FF +A  GS GEA DP  A  AG+VDAGS PP+ YG+ + A YDLGG GGGD Q      G+QFG                              GG     G XXXXXXXXX  DHF G+P+QASSTP QPKPTDP  LEE AG++EEA SQF A VK RAEKEAAKAAEVKRLAEEELDGFYD RTDEVARRQARSREQEE FLK V+ASI  STSNPWARICDLVDLKKP++S++ + S  A   GXXXXXXXX  R+ S  AQS GM+EE++FRATEKMRSLIIQ+KADTA SN G DTG
Sbjct:    1 MSGEDPFFPDATGGSSGEAADPGAAASAGFVDAGSPPPVAYGMQETAAYDLGGGGGGD-QFGVVGDGEQFG------------------------------GGXXXXEGLXXXXXXXXXXGDHFEGVPLQASSTPYQPKPTDPCSLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGA---GXXXXXXXXXXRKGSATAQS-GMEEEEVFRATEKMRSLIIQMKADTAESNAGGDTG 275
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNJ2_ECTSI1.550e-9563.55Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..183
NoneNo IPR availablePANTHERPTHR10639:SF7CLATHRIN LIGHT CHAINcoord: 128..297
IPR000996Clathrin light chainPFAMPF01086Clathrin_lg_chcoord: 156..236
e-value: 1.6E-12
score: 48.0
IPR000996Clathrin light chainPANTHERPTHR10639CLATHRIN LIGHT CHAINcoord: 128..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1556662..1559055 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2178.1mRNA_P-fluviatile_contig14.2178.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig14 1556605..1562163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig14.2178.1 ID=prot_P-fluviatile_contig14.2178.1|Name=mRNA_P-fluviatile_contig14.2178.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=309bp
MSAEDAFFQEAGSLGEATDPSVAPPAGYVDAGSAPPLVYGIPDPATYDLG
GAGGGDDQLDGGGGGDQFGGGDQFGGGDQFGGGDQFGGGDQFGGGGADDG
GMFGGGGGDGQQFGGGGAEDHFGGMPMQASSTPRQPKPTDPYGLEETAGI
IEEANSQFKAAVKARAEKEAAKAAEVKRLAEEELDGFYDQRTDEVARRQA
RSREQEEAFLKAVNASIAGSTSNPWARICDLVDLKKPIVSSRPATSGSAR
ASGGGSGGGGTGKRRASVAAQSRGMDEEDLFRATEKMRSLIIQLKADTAA
SNTGDDTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000996Clathrin_L-chain