mRNA_P-fluviatile_contig14.2170.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2170.1
Unique NamemRNA_P-fluviatile_contig14.2170.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2170.1 vs. uniprot
Match: A0A6H5L288_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L288_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 4.110e-73
Identity = 119/155 (76.77%), Postives = 136/155 (87.74%), Query Frame = 1 
Query:    1 GAERVAMLAAVAAVACGGLIAGQHPHQLGWGVAMCLIGGMIGTWFSELNGGAEGRIKWGDWRCNAVSFAGMVTAARYAARLESEEREALVESTFFVALVAQGFGTISGFSDLSADAGDLALEGDYVGAAANMLLNITTALVALLVRFKAAKIFLQ 465
            GAE+ A++AAVAA+A G  +AGQHPH+LGWG+ M ++GG+IG WFS LNGGAEGRI WGDWRCNA+SFAG++TA RYAA LE EEREA +ES FFVALVAQGFGTISGFSDLSADAGDLAL+GDY GAAANMLLNI TA+VAL  RFKAAKIF+ 
Sbjct:  146 GAEKTALVAAVAAMAWGSWMAGQHPHKLGWGIIMAVMGGIIGNWFSTLNGGAEGRIVWGDWRCNALSFAGVITAGRYAASLEPEEREATLESAFFVALVAQGFGTISGFSDLSADAGDLALKGDYWGAAANMLLNIATAVVALFARFKAAKIFIS 300
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L288_9PHAE4.110e-7376.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1493125..1496552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_006830.1
Exons4
Model size1088
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2170.1prot_P-fluviatile_contig14.2170.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1493143..1495938 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.7158556-UTR-P-fluviatile_contig14:1493124..14931421622815614.7158556-UTR-P-fluviatile_contig14:1493124..1493142Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1493125..1493142 +
1693562462.9310849-UTR-P-fluviatile_contig14:1493124..14931421693562462.9310849-UTR-P-fluviatile_contig14:1493124..1493142Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1493125..1493142 +
1622815614.7745938-UTR-P-fluviatile_contig14:1495938..14965521622815614.7745938-UTR-P-fluviatile_contig14:1495938..1496552Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1495939..1496552 +
1693562462.9744017-UTR-P-fluviatile_contig14:1495938..14965521693562462.9744017-UTR-P-fluviatile_contig14:1495938..1496552Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1495939..1496552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815614.726117-CDS-P-fluviatile_contig14:1493142..14932361622815614.726117-CDS-P-fluviatile_contig14:1493142..1493236Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1493143..1493236 +
1693562462.9388175-CDS-P-fluviatile_contig14:1493142..14932361693562462.9388175-CDS-P-fluviatile_contig14:1493142..1493236Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1493143..1493236 +
1622815614.7376895-CDS-P-fluviatile_contig14:1494078..14941361622815614.7376895-CDS-P-fluviatile_contig14:1494078..1494136Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1494079..1494136 +
1693562462.9473183-CDS-P-fluviatile_contig14:1494078..14941361693562462.9473183-CDS-P-fluviatile_contig14:1494078..1494136Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1494079..1494136 +
1622815614.7487895-CDS-P-fluviatile_contig14:1495277..14954291622815614.7487895-CDS-P-fluviatile_contig14:1495277..1495429Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1495278..1495429 +
1693562462.9559636-CDS-P-fluviatile_contig14:1495277..14954291693562462.9559636-CDS-P-fluviatile_contig14:1495277..1495429Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1495278..1495429 +
1622815614.7621152-CDS-P-fluviatile_contig14:1495786..14959381622815614.7621152-CDS-P-fluviatile_contig14:1495786..1495938Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1495787..1495938 +
1693562462.9649343-CDS-P-fluviatile_contig14:1495786..14959381693562462.9649343-CDS-P-fluviatile_contig14:1495786..1495938Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1495787..1495938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2170.1

>prot_P-fluviatile_contig14.2170.1 ID=prot_P-fluviatile_contig14.2170.1|Name=mRNA_P-fluviatile_contig14.2170.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=152bp
MLAAVAAVACGGLIAGQHPHQLGWGVAMCLIGGMIGTWFSELNGGAEGRI
KWGDWRCNAVSFAGMVTAARYAARLESEEREALVESTFFVALVAQGFGTI
SGFSDLSADAGDLALEGDYVGAAANMLLNITTALVALLVRFKAAKIFLQA
P*
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mRNA from alignment at P-fluviatile_contig14:1493125..1496552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2170.1 ID=mRNA_P-fluviatile_contig14.2170.1|Name=mRNA_P-fluviatile_contig14.2170.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3428bp|location=Sequence derived from alignment at P-fluviatile_contig14:1493125..1496552+ (Porterinema fluviatile SAG_2381)
GGGGCGGAGAGGGTGGCAATGTTGGCTGCGGTGGCGGCCGTAGCGTGTGG
CGGATTGATAGCTGGCCAGCACCCGCACCAGTTGGGCTGGGGTGTGGCTA
TGTGCCTCATAGGTGAGAGAGAAGATGAGAAGAGGACGAGAAAAAAACGT
GCCGACAAATTACATTCGCAAGTTAGTGTTCATGATTGCCCGTATGTTTT
TTTCGGTCTATGTCGTCAGGGGAAAGCGAACACACGATGGATGAAGTTGT
GTGAGCGCTTCCTTTGAAAGTGATCGGGAGAGTCGTCTCGAGTGGTGAAT
GTTTGGGGATCACATGTATCCCAAGCGGACTTTGTAGATAGCATCATAAA
CTCGGTGCTCGCGTTGATGGAAGCATAGACGGGGGTAATCGGGGGTCCAA
GCGGCTTGATGACGCTGAGTCTGCTGAACATCATTCCGTCTCAGGCAAAG
TTCAGCTTTCAATAGGCATGCACGCGCGTCGAATGTGATGGGGCTGCTTT
GTCGTCACCATTTGTGCTAGCTTCGGTTCTGTTACCGCTTGCCCCTACAC
AGGGTGAGGAGGCCGGCAAGGTGACGAAATTTGGCTTGTGTTTCCCATCC
TCTCATCGTGAGCTTTCTCAGTGTATTTTTGAGTACGCATGGCATCGTTG
GTTCCAGACCCTGGGAGGGTCAGCGTGTAGGATTTCTGTGGCGCTGGGGG
AAATATGATGCTGCGTTACCCTCGGCGTAATGCAGTAGCAATTTCACGGT
TTGTGTTCATCTCGTGCACACACCCCTTATGGACGTTCGCAGAGCAAAGT
AGACCTCACTAGAACAACTTTTCGTGTCGGTTTTTCGTCGACGACATGCG
TCCCCACCCCGATGTCTCTCACTCGCTCTCTCGTTCGCTCCCTAGCTGCC
TCAATGCCTCTACCTCCCTCCATTCCCATGCAAATTTCGTCACTTGCCTG
CCAGGGGGCATGATTGGCACCTGGTTCTCTGAATTGAACGGAGGTGCTGA
AGGCAGAATAAAGTGAGTCGTGTCTTCATGTGCGTTGTCTCAGACCTCTC
ATTTGTACAGGAATCCACGGCAAAGGCACATGGCGCGGGCGTCTGTCGGG
ATTAAAACCGAATCCAGAAAGCCAGCCACGCCTTGTGGCGATACAAACCC
AACATCGAGAGAAGCGAAAGGCACGTGATGGGCGTAATACTCCGGAGTAG
GAAGCAAGGAGGTGGGCGGGGAGCATGGGTGATGTGCTTGGAGTTCCATG
ACGTCATCATGGACTGCTGGGCAAAAAGCGTCACTGCAATGCACGCCGGT
GATGACGACAGCGGTGGCCATAGGCTATTCGCACGTTTGTTTGAGCCTCA
AAAGTGTTCGTACGTCGTGCACACATGTCAGGTGGTGTGCATTTTTTCTC
TCTCTCTTTTCTCTCGCGCGCTATCTTTCGTTTCGGCCCCCCGATGACAG
GCTATCCGCGCTCACAATCGACGTAAAAAATTGCGGGAACCACTTTTCCT
CCTCTAACACATGTCGAACAGCTTCTTGATGTCCTGCACGTCCTTTTGTC
AGACAAACTCGCCGCGGTATTGTACTCTGTCGGCCATCAATATTGTGTGA
ACACCAGCGATGTAGTCATTTCGGCTTGACAGACCCCCTGTTGTTTTGCT
CTGTTCTCCAGGCCTACTCACTCCGAAGAAGGAAAGTTTGTACAGGTGGT
TTACTGGAATGTGTCACCGCATTAGCTGGCTTTATCAAGTGCGGCTCACT
AGACGGGGGGGGTGTATTGTGTATTGTGTGCCACATGCTAATTGGACGAT
GTTGTCAGCGCGTGCCACGCACGTGCCCCAACTGCGCTTGGTTTGGTACA
TGCGACGGACACGTTTAGTGTTTCCACCAGGCGTGAACAAACGGCGCCCT
ATCCCGCTGAATCTCAACAGCTTCCACCCAGACGGACTTTTGCCCGCACA
ACTTCTGTATTATTCCTTTTCCCGTAGCAATCTTTCCCTGAAGTGTTTTC
GATGGTCCCGCGCAATGCTTATCGATCGACCTTCGTGGTTCAAGGTTGAT
GCCGCGAGAGACGGCGAGCGGTGGTCAACATTTTGCGCGGCGTTTGACGC
CCCTCATTCCCTCTATCTTTCTCGACTCCATGAATAAACATATGAACGAA
AAGGTGGGGAGACTGGCGATGCAACGCTGTTTCGTTCGCGGGCATGGTGA
CCGCCGCAAGATATGCGGCGAGATTGGAGTCCGAGGAGCGAGAAGCTCTG
GTGGAAAGTACCTTTTTCGTTGCTCTGGTTGCCCAAGGGTTCGGGACCAT
TTCAGGTGGGGTTTATCTTTGCCTTTTTCTTGATTGAGATGACTGCACAG
CAATTCAAGAGACCTTGGTTCTTTGCTTTACGGAGTATGCTGTATCGTAC
CCTACGAGCAACAGGTCCGAGCGGCAACGGCTGGTGGACAAGGTGAAGCG
TGGCCTTCCTTGAACAACGTTGAACTCTAGGATCGTCCCAACGCCCGACC
TCAGCGTGTTGTTGTTGAATAATTTTCGTTTCCGAAATATACCACTGTGT
TACGTTTGACAGCAAAAACTGCTGTGTAGTGTTGTACGTTTACGTTTGGC
AGATTTATTGAAAGCTCAATCTTTAATCTTCGGCATGATCTCCTTTTTGT
TGCAAAACGCAGGGTTTTCCGACCTTTCGGCGGATGCGGGCGATCTCGCT
CTCGAGGGAGATTACGTGGGAGCGGCCGCCAACATGCTGCTTAACATCAC
CACCGCATTGGTCGCTCTCCTCGTACGGTTCAAGGCCGCGAAAATTTTCT
TACAGGCTCCATGAGGATGAACATGCGGACAAAAATGATTTACACAGTGC
ATACGTCCCATGGGCAGATTTCTGGAGATACGCATTTAAACGTTTATTTC
GTTTCCCTTCACAGGTCGTAATGAGGCCCATGCGAATCGACTTGGGCGTC
ACTGTAACCTGGCGGTCTATTTGTCGTTGGATATCCCATCAGCTTGTTCA
GCAGATAAAAGAGGCGGGCGGTTCCTTGTGGAGGCCGCTACGTTGCTGCA
TTCGCGGGCCGGTGTACTTCGTAGTTTATGCTCTTTGGGTGTACGGCGAG
CATATCCACGTGTTTCGGCTTTTTGCCCCATTCCGTTGCAGGAGTTATTC
TTGACCATCGACCTTTTCGTGTCCCATGCATACCTTCCTTGTTGCTGGAT
TCCCTCTTTCATCCATTAAATAGATTATGATAAGTAGGCGGGCATGTGGG
TTTGCCACATGTGCTTTCTTGTTGCTTACTATCTTAATCTGTGAGGGGTG
ACTAGTGACAAAGCGCTGGTGCATTGACAATGTTCCCCCTCCAATTGTGC
ATTTGAACCTCCCCTTTTCTTCATTAACAAATGACCGTGCGGTCAAGGCT
GCCTTCGATCCTGTGTACTCACTTGTCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1493125..1496552+

>mRNA_P-fluviatile_contig14.2170.1 ID=mRNA_P-fluviatile_contig14.2170.1|Name=mRNA_P-fluviatile_contig14.2170.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=912bp|location=Sequence derived from alignment at P-fluviatile_contig14:1493125..1496552+ (Porterinema fluviatile SAG_2381)
ATGTTGGCTGCGGTGGCGGCCGTAGCGTGTGGCGGATTGATAGCTGGCCA
GCACCCGCACCAGTTGGGCTGGGGTGTGGCTATGTGCCTCATAGATGTTG
GCTGCGGTGGCGGCCGTAGCGTGTGGCGGATTGATAGCTGGCCAGCACCC
GCACCAGTTGGGCTGGGGTGTGGCTATGTGCCTCATAGGGGGCATGATTG
GCACCTGGTTCTCTGAATTGAACGGAGGTGCTGAAGGCAGAATAAAGGGG
CATGATTGGCACCTGGTTCTCTGAATTGAACGGAGGTGCTGAAGGCAGAA
TAAAGTGGGGAGACTGGCGATGCAACGCTGTTTCGTTCGCGGGCATGGTG
ACCGCCGCAAGATATGCGGCGAGATTGGAGTCCGAGGAGCGAGAAGCTCT
GGTGGAAAGTACCTTTTTCGTTGCTCTGGTTGCCCAAGGGTTCGGGACCA
TTTCAGGTGGGGAGACTGGCGATGCAACGCTGTTTCGTTCGCGGGCATGG
TGACCGCCGCAAGATATGCGGCGAGATTGGAGTCCGAGGAGCGAGAAGCT
CTGGTGGAAAGTACCTTTTTCGTTGCTCTGGTTGCCCAAGGGTTCGGGAC
CATTTCAGGGTTTTCCGACCTTTCGGCGGATGCGGGCGATCTCGCTCTCG
AGGGAGATTACGTGGGAGCGGCCGCCAACATGCTGCTTAACATCACCACC
GCATTGGTCGCTCTCCTCGTACGGTTCAAGGCCGCGAAAATTTTCTTACA
GGCTCCATGAGGTTTTCCGACCTTTCGGCGGATGCGGGCGATCTCGCTCT
CGAGGGAGATTACGTGGGAGCGGCCGCCAACATGCTGCTTAACATCACCA
CCGCATTGGTCGCTCTCCTCGTACGGTTCAAGGCCGCGAAAATTTTCTTA
CAGGCTCCATGA
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